Wall clock time and date at job start Mon Mar 30 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38675 * 120.41833 * 2 1 4 4 C 1.38624 * 118.42424 * 179.71145 * 3 2 1 5 5 C 1.38229 * 119.15794 * 0.54515 * 4 3 2 6 6 C 1.50694 * 119.61849 * 179.71049 * 5 4 3 7 7 N 1.46900 * 109.46924 * 53.39844 * 6 5 4 8 8 C 1.46908 * 110.99682 * 184.98948 * 7 6 5 9 9 C 1.53005 * 109.46882 * 175.16412 * 8 7 6 10 10 C 1.50698 * 115.54845 * 57.74245 * 9 8 7 11 11 H 1.08006 * 120.00352 * 264.86365 * 10 9 8 12 12 C 1.37879 * 120.00118 * 84.86874 * 10 9 8 13 13 N 1.31519 * 120.00068 * 185.75522 * 12 10 9 14 14 Si 1.86802 * 119.99868 * 5.75158 * 12 10 9 15 15 H 1.48495 * 109.46984 * 89.28020 * 14 12 10 16 16 H 1.48497 * 109.46992 * 209.28066 * 14 12 10 17 17 H 1.48490 * 109.46991 * 329.27947 * 14 12 10 18 18 C 1.52995 * 117.49652 * 272.07457 * 9 8 7 19 19 C 1.52995 * 117.49812 * 203.41002 * 9 8 7 20 20 N 1.31862 * 120.76387 * 359.44041 * 5 4 3 21 21 C 1.31891 * 121.72262 * 0.27252 * 20 5 4 22 22 C 1.50701 * 119.61478 * 179.97438 * 21 20 5 23 23 H 1.09000 * 109.47244 * 270.02038 * 1 2 3 24 24 H 1.09001 * 109.47289 * 30.02149 * 1 2 3 25 25 H 1.09003 * 109.46889 * 150.02225 * 1 2 3 26 26 H 1.08003 * 120.78896 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.42546 * 180.27950 * 4 3 2 28 28 H 1.08997 * 109.47510 * 293.39662 * 6 5 4 29 29 H 1.09000 * 109.46998 * 173.39662 * 6 5 4 30 30 H 1.00898 * 111.00168 * 61.03503 * 7 6 5 31 31 H 1.08993 * 109.47450 * 55.16152 * 8 7 6 32 32 H 1.09003 * 109.46886 * 295.15627 * 8 7 6 33 33 H 0.96997 * 119.99793 * 179.97438 * 13 12 10 34 34 H 1.09001 * 117.49841 * 359.97438 * 18 9 8 35 35 H 1.09001 * 117.49724 * 145.02304 * 18 9 8 36 36 H 1.08991 * 117.50076 * 214.97886 * 19 9 8 37 37 H 1.09001 * 117.50131 * 359.97438 * 19 9 8 38 38 H 1.09006 * 109.46805 * 89.99691 * 22 21 20 39 39 H 1.08995 * 109.47233 * 209.99556 * 22 21 20 40 40 H 1.08998 * 109.46993 * 330.00269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0005 7 7 6.2555 0.6523 1.1162 8 6 7.7229 0.7098 1.0784 9 6 8.2251 1.6456 2.1799 10 6 7.8073 1.2825 3.5816 11 1 6.9327 1.7400 4.0201 12 6 8.5416 0.3662 4.3043 13 7 8.1158 -0.0357 5.4820 14 14 10.1413 -0.3042 3.6108 15 1 11.2660 0.5732 4.0236 16 1 10.3686 -1.6771 4.1292 17 1 10.0610 -0.3418 2.1286 18 6 8.3474 3.1327 1.8421 19 6 9.6068 2.2762 1.9956 20 7 3.5255 -1.1996 0.0005 21 6 2.2066 -1.1916 0.0005 22 6 1.4539 -2.4972 0.0000 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6889 2.1424 0.0004 27 1 4.1735 2.0593 0.0109 28 1 6.1118 0.2499 -0.9407 29 1 6.0504 -1.1827 0.1139 30 1 5.9303 0.2940 2.0016 31 1 8.0470 1.0846 0.1076 32 1 8.1299 -0.2889 1.2367 33 1 8.6322 -0.6806 5.9902 34 1 8.0705 3.4444 0.8349 35 1 8.1261 3.8485 2.6337 36 1 10.2135 2.4289 2.8881 37 1 10.1583 2.0241 1.0898 38 1 1.2725 -2.8124 1.0276 39 1 0.5015 -2.3673 -0.5137 40 1 2.0436 -3.2562 -0.5141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313820240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:32 Heat of formation + Delta-G solvation = 52.260795 kcal Electronic energy + Delta-G solvation = -18999.288402 eV Core-core repulsion = 16200.337113 eV Total energy + Delta-G solvation = -2798.951289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28832 -37.34043 -35.23751 -33.22191 -32.72809 -32.05305 -28.54657 -28.17382 -25.87513 -24.78669 -23.04211 -22.30319 -21.52065 -20.72253 -18.93031 -16.60099 -16.30659 -15.75540 -15.08419 -14.86778 -14.82045 -14.38921 -13.95807 -13.75262 -13.23160 -12.99591 -12.79496 -12.68884 -12.64097 -12.40283 -12.12331 -12.00247 -11.63178 -11.58690 -11.12163 -11.00285 -10.70458 -10.38013 -10.03719 -9.53574 -9.45869 -9.26164 -8.99978 -8.59918 -8.48921 -8.35770 -7.66882 -6.08432 -4.10268 1.23852 1.45040 3.31178 3.40603 3.45457 3.84628 4.24379 4.45097 4.73608 4.83204 4.88143 4.95850 5.05835 5.22622 5.26136 5.37904 5.51150 5.57837 5.64649 5.66577 5.72110 5.77126 5.85333 5.91249 6.00171 6.15798 6.16212 6.24490 6.35999 6.39431 6.42788 6.55949 6.56567 6.82033 6.90299 7.10907 7.21464 7.76104 7.80683 8.08366 8.25933 8.56693 8.97565 9.55888 11.03200 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004661 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.365292 B = 6005.555845 C = 6357.749166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C -0.081 4.081 4 C -0.139 4.139 5 C 0.135 3.865 6 C 0.104 3.896 7 N -0.673 5.673 8 C 0.100 3.900 9 C 0.009 3.991 10 C -0.484 4.484 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.898 5.898 14 Si 0.879 3.121 15 H -0.280 1.280 16 H -0.297 1.297 17 H -0.258 1.258 18 C -0.170 4.170 19 C -0.207 4.207 20 N -0.481 5.481 21 C 0.120 3.880 22 C -0.104 4.104 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.358 0.642 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 -0.491 -12.873 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.150 4.150 3 C -0.107 4.107 4 C -0.160 4.160 5 C -0.003 4.003 6 C -0.026 4.026 7 N -0.306 5.306 8 C -0.029 4.029 9 C 0.008 3.992 10 C -0.521 4.521 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.535 5.535 14 Si 0.707 3.293 15 H -0.206 1.206 16 H -0.224 1.224 17 H -0.183 1.183 18 C -0.208 4.208 19 C -0.245 4.245 20 N -0.191 5.191 21 C -0.018 4.018 22 C -0.161 4.161 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.179 0.821 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.487 -0.827 -13.035 17.394 hybrid contribution 0.839 -0.388 0.160 0.939 sum -10.647 -1.215 -12.875 16.751 Atomic orbital electron populations 1.20765 0.90699 1.02712 1.02433 1.20637 0.97157 0.93799 1.03384 1.21478 0.94261 0.97781 0.97133 1.21956 0.94427 0.99820 0.99749 1.21187 0.96377 0.88188 0.94562 1.20699 0.87910 0.97236 0.96735 1.60356 1.09870 1.54351 1.05976 1.21592 0.86299 0.98015 0.96985 1.19322 0.93876 0.90533 0.95503 1.20289 1.12925 1.24223 0.94684 0.90372 1.25004 0.97591 0.95495 0.94565 1.69914 1.38750 1.32014 1.12857 0.86869 0.84468 0.77496 0.80445 1.20570 1.22417 1.18270 1.22719 1.01923 0.96085 1.00042 1.22994 0.92095 1.08443 1.00986 1.67301 1.07555 1.31560 1.12680 1.21014 0.89596 0.94831 0.96360 1.20741 0.99038 0.93386 1.02974 0.91064 0.91680 0.91133 0.85143 0.83970 0.90035 0.93826 0.82147 0.93434 0.95643 0.92675 0.91015 0.89957 0.89709 0.91235 0.90542 0.90720 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.62 36.00 0.35 -0.58 16 2 C -0.15 -1.82 5.90 -104.48 -0.62 -2.43 16 3 C -0.08 -1.03 9.86 -39.28 -0.39 -1.41 16 4 C -0.14 -2.05 9.49 -39.44 -0.37 -2.43 16 5 C 0.14 2.21 6.46 -82.59 -0.53 1.68 16 6 C 0.10 1.74 6.02 -4.98 -0.03 1.71 16 7 N -0.67 -13.00 6.14 -115.05 -0.71 -13.70 16 8 C 0.10 2.07 5.35 -3.82 -0.02 2.05 16 9 C 0.01 0.20 1.06 -155.66 -0.17 0.04 16 10 C -0.48 -13.20 8.64 -34.44 -0.30 -13.49 16 11 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 12 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 14 Si 0.88 21.73 24.84 -169.99 -4.22 17.50 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.26 -6.05 5.76 56.52 0.33 -5.73 16 18 C -0.17 -3.50 9.94 -26.69 -0.27 -3.77 16 19 C -0.21 -4.43 7.44 -26.69 -0.20 -4.63 16 20 N -0.48 -7.96 10.17 -5.74 -0.06 -8.02 16 21 C 0.12 1.67 6.78 -82.59 -0.56 1.11 16 22 C -0.10 -1.08 9.77 36.01 0.35 -0.73 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.07 0.50 5.96 -51.93 -0.31 0.19 16 26 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 29 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.36 7.80 8.10 -39.29 -0.32 7.48 16 31 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 32 H 0.03 0.56 6.85 -51.93 -0.36 0.20 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.08 1.90 7.07 -51.93 -0.37 1.54 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.58 5.94 -51.93 -0.31 0.27 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -30.28 324.46 -8.53 -38.80 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.36 Total: 7.73 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -2.85 Total: -20.85 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.01 Total: -48.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.22 Total: 17.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.28 -8.53 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313820240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.066 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds