Wall clock time and date at job start Mon Mar 30 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38675 * 120.41833 * 2 1 4 4 C 1.38624 * 118.42424 * 179.71145 * 3 2 1 5 5 C 1.38229 * 119.15794 * 0.54515 * 4 3 2 6 6 C 1.50694 * 119.61849 * 179.71049 * 5 4 3 7 7 N 1.46900 * 109.46924 * 53.39844 * 6 5 4 8 8 C 1.46908 * 110.99682 * 184.98948 * 7 6 5 9 9 C 1.53005 * 109.46882 * 175.16412 * 8 7 6 10 10 C 1.50698 * 115.54845 * 57.74245 * 9 8 7 11 11 H 1.08006 * 120.00352 * 264.86365 * 10 9 8 12 12 C 1.37879 * 120.00118 * 84.86874 * 10 9 8 13 13 N 1.31519 * 120.00068 * 185.75522 * 12 10 9 14 14 Si 1.86802 * 119.99868 * 5.75158 * 12 10 9 15 15 H 1.48495 * 109.46984 * 89.28020 * 14 12 10 16 16 H 1.48497 * 109.46992 * 209.28066 * 14 12 10 17 17 H 1.48490 * 109.46991 * 329.27947 * 14 12 10 18 18 C 1.52995 * 117.49652 * 272.07457 * 9 8 7 19 19 C 1.52995 * 117.49812 * 203.41002 * 9 8 7 20 20 N 1.31862 * 120.76387 * 359.44041 * 5 4 3 21 21 C 1.31891 * 121.72262 * 0.27252 * 20 5 4 22 22 C 1.50701 * 119.61478 * 179.97438 * 21 20 5 23 23 H 1.09000 * 109.47244 * 270.02038 * 1 2 3 24 24 H 1.09001 * 109.47289 * 30.02149 * 1 2 3 25 25 H 1.09003 * 109.46889 * 150.02225 * 1 2 3 26 26 H 1.08003 * 120.78896 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.42546 * 180.27950 * 4 3 2 28 28 H 1.08997 * 109.47510 * 293.39662 * 6 5 4 29 29 H 1.09000 * 109.46998 * 173.39662 * 6 5 4 30 30 H 1.00898 * 111.00168 * 61.03503 * 7 6 5 31 31 H 1.08993 * 109.47450 * 55.16152 * 8 7 6 32 32 H 1.09003 * 109.46886 * 295.15627 * 8 7 6 33 33 H 0.96997 * 119.99793 * 179.97438 * 13 12 10 34 34 H 1.09001 * 117.49841 * 359.97438 * 18 9 8 35 35 H 1.09001 * 117.49724 * 145.02304 * 18 9 8 36 36 H 1.08991 * 117.50076 * 214.97886 * 19 9 8 37 37 H 1.09001 * 117.50131 * 359.97438 * 19 9 8 38 38 H 1.09006 * 109.46805 * 89.99691 * 22 21 20 39 39 H 1.08995 * 109.47233 * 209.99556 * 22 21 20 40 40 H 1.08998 * 109.46993 * 330.00269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0005 7 7 6.2555 0.6523 1.1162 8 6 7.7229 0.7098 1.0784 9 6 8.2251 1.6456 2.1799 10 6 7.8073 1.2825 3.5816 11 1 6.9327 1.7400 4.0201 12 6 8.5416 0.3662 4.3043 13 7 8.1158 -0.0357 5.4820 14 14 10.1413 -0.3042 3.6108 15 1 11.2660 0.5732 4.0236 16 1 10.3686 -1.6771 4.1292 17 1 10.0610 -0.3418 2.1286 18 6 8.3474 3.1327 1.8421 19 6 9.6068 2.2762 1.9956 20 7 3.5255 -1.1996 0.0005 21 6 2.2066 -1.1916 0.0005 22 6 1.4539 -2.4972 0.0000 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6889 2.1424 0.0004 27 1 4.1735 2.0593 0.0109 28 1 6.1118 0.2499 -0.9407 29 1 6.0504 -1.1827 0.1139 30 1 5.9303 0.2940 2.0016 31 1 8.0470 1.0846 0.1076 32 1 8.1299 -0.2889 1.2367 33 1 8.6322 -0.6806 5.9902 34 1 8.0705 3.4444 0.8349 35 1 8.1261 3.8485 2.6337 36 1 10.2135 2.4289 2.8881 37 1 10.1583 2.0241 1.0898 38 1 1.2725 -2.8124 1.0276 39 1 0.5015 -2.3673 -0.5137 40 1 2.0436 -3.2562 -0.5141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313820240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:32 Heat of formation + Delta-G solvation = 32.542849 kcal Electronic energy + Delta-G solvation = -19000.143437 eV Core-core repulsion = 16200.337113 eV Total energy + Delta-G solvation = -2799.806324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34487 -39.03684 -36.56892 -34.38131 -34.18793 -33.77564 -29.67062 -29.18480 -27.76488 -26.18766 -24.38707 -23.33374 -23.18354 -21.85693 -20.81244 -18.25365 -17.63126 -17.07755 -16.81531 -16.30225 -15.93341 -15.52727 -15.43067 -15.25210 -14.75470 -14.34541 -13.94917 -13.81516 -13.72713 -13.56328 -13.45169 -13.18987 -12.99866 -12.85024 -12.72346 -12.53645 -12.11633 -12.02463 -11.88447 -11.35723 -10.96242 -10.57661 -10.57042 -10.35110 -10.22765 -9.51087 -9.23230 -8.27514 -6.32277 0.17702 0.40195 1.34925 1.37919 1.49939 2.37962 2.72412 3.03329 3.10073 3.34449 3.75379 3.82366 3.91335 4.08648 4.13017 4.17731 4.37277 4.46092 4.46977 4.63434 4.67417 4.73134 4.74317 4.76099 4.80315 4.86032 4.88398 4.91850 4.94460 5.13454 5.16069 5.28804 5.32286 5.38999 5.44854 5.55084 5.76283 5.89585 6.22596 6.36845 6.42845 6.78143 7.13093 7.36728 8.87914 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004661 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.365292 B = 6005.555845 C = 6357.749166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C -0.084 4.084 4 C -0.150 4.150 5 C 0.108 3.892 6 C 0.111 3.889 7 N -0.671 5.671 8 C 0.107 3.893 9 C -0.020 4.020 10 C -0.475 4.475 11 H 0.031 0.969 12 C 0.019 3.981 13 N -0.950 5.950 14 Si 0.937 3.063 15 H -0.272 1.272 16 H -0.304 1.304 17 H -0.233 1.233 18 C -0.154 4.154 19 C -0.200 4.200 20 N -0.512 5.512 21 C 0.100 3.900 22 C -0.102 4.102 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.160 0.840 27 H 0.142 0.858 28 H 0.101 0.899 29 H 0.030 0.970 30 H 0.338 0.662 31 H 0.078 0.922 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 0.065 -15.437 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.170 4.170 5 C -0.030 4.030 6 C -0.019 4.019 7 N -0.301 5.301 8 C -0.023 4.023 9 C -0.021 4.021 10 C -0.513 4.513 11 H 0.049 0.951 12 C -0.178 4.178 13 N -0.590 5.590 14 Si 0.762 3.238 15 H -0.197 1.197 16 H -0.232 1.232 17 H -0.155 1.155 18 C -0.191 4.191 19 C -0.237 4.237 20 N -0.223 5.223 21 C -0.039 4.039 22 C -0.159 4.159 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.177 0.823 27 H 0.160 0.840 28 H 0.119 0.881 29 H 0.048 0.952 30 H 0.156 0.844 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.091 -0.244 -15.638 19.769 hybrid contribution 0.856 -0.504 0.982 1.396 sum -11.235 -0.748 -14.657 18.482 Atomic orbital electron populations 1.20860 0.87642 1.04474 1.03407 1.21103 0.99330 0.92967 1.01217 1.21868 0.93602 0.99388 0.96104 1.22028 0.95628 0.99116 1.00276 1.21148 0.96121 0.89039 0.96673 1.20679 0.88775 0.96090 0.96307 1.60375 1.09287 1.54829 1.05632 1.21503 0.86812 0.96597 0.97345 1.19278 0.96163 0.92922 0.93703 1.20405 1.10928 1.23019 0.96906 0.95074 1.25803 1.01074 0.96130 0.94776 1.70065 1.40558 1.33573 1.14798 0.85932 0.80296 0.76347 0.81211 1.19725 1.23177 1.15542 1.22746 1.00885 0.94137 1.01318 1.23037 0.91498 1.07455 1.01744 1.67263 1.09191 1.32020 1.13852 1.21661 0.89097 0.96992 0.96104 1.20832 0.99865 0.91618 1.03552 0.90260 0.89946 0.89432 0.82263 0.83979 0.88147 0.95166 0.84431 0.90393 0.97259 0.92846 0.87911 0.91040 0.91102 0.88133 0.90172 0.87712 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.62 71.24 0.69 -0.77 16 2 C -0.14 -3.26 5.90 -19.78 -0.12 -3.37 16 3 C -0.08 -1.99 9.86 22.47 0.22 -1.77 16 4 C -0.15 -4.34 9.49 22.36 0.21 -4.13 16 5 C 0.11 3.54 6.46 42.55 0.27 3.82 16 6 C 0.11 3.71 6.02 85.56 0.51 4.22 16 7 N -0.67 -25.95 6.14 -517.92 -3.18 -29.13 16 8 C 0.11 4.24 5.35 86.30 0.46 4.70 16 9 C -0.02 -0.87 1.06 -52.93 -0.06 -0.93 16 10 C -0.47 -26.64 8.64 25.60 0.22 -26.42 16 11 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 12 C 0.02 1.11 5.47 84.65 0.46 1.58 16 13 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 14 Si 0.94 44.87 24.84 68.60 1.70 46.57 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 17 H -0.23 -10.09 5.76 99.48 0.57 -9.52 16 18 C -0.15 -5.97 9.94 30.62 0.30 -5.66 16 19 C -0.20 -7.95 7.44 30.62 0.23 -7.72 16 20 N -0.51 -17.10 10.17 -172.08 -1.75 -18.84 16 21 C 0.10 2.67 6.78 42.54 0.29 2.96 16 22 C -0.10 -1.95 9.77 71.24 0.70 -1.26 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 25 H 0.09 0.90 5.96 -2.39 -0.01 0.89 16 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.10 2.89 8.09 -2.39 -0.02 2.88 16 29 H 0.03 1.07 8.11 -2.39 -0.02 1.05 16 30 H 0.34 15.33 8.10 -89.70 -0.73 14.61 16 31 H 0.08 2.63 8.06 -2.39 -0.02 2.61 16 32 H 0.01 0.40 6.85 -2.39 -0.02 0.38 16 33 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.07 3.03 7.07 -2.39 -0.02 3.01 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.10 1.32 5.94 -2.39 -0.01 1.30 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -68.27 324.46 1.64 -66.63 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.16 Total: 29.02 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.40 Total: -34.77 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.63 Total: -107.45 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.70 Total: 46.57 kcal Total: -68.27 1.64 -66.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313820240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.172 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds