Wall clock time and date at job start Mon Mar 30 2020 07:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 H 1.08996 * 109.47450 * 55.00031 * 3 2 1 5 5 N 1.46505 * 109.47263 * 294.99887 * 3 2 1 6 6 C 1.39847 * 119.99766 * 120.91330 * 5 3 2 7 7 C 1.39603 * 119.84286 * 17.25580 * 6 5 3 8 8 C 1.38058 * 120.54883 * 179.72273 * 7 6 5 9 9 C 1.38738 * 120.21884 * 0.25158 * 8 7 6 10 10 N 1.38868 * 120.15847 * 179.97438 * 9 8 7 11 11 C 1.41557 * 119.67662 * 359.97438 * 9 8 7 12 12 C 1.41028 * 120.26831 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99929 * 335.89885 * 12 11 9 14 14 C 1.39886 * 119.99874 * 155.89252 * 12 11 9 15 15 N 1.30900 * 120.00320 * 342.26665 * 14 12 11 16 16 Si 1.86804 * 119.99612 * 162.26335 * 14 12 11 17 17 H 1.48502 * 109.46968 * 60.00346 * 16 14 12 18 18 H 1.48501 * 109.46744 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47362 * 300.00227 * 16 14 12 20 20 C 1.38013 * 119.83791 * 197.48722 * 6 5 3 21 21 C 1.53000 * 109.47117 * 174.99919 * 3 2 1 22 22 C 1.52993 * 117.50054 * 253.29774 * 21 3 2 23 23 C 1.52997 * 117.50023 * 184.63369 * 21 3 2 24 24 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47208 * 300.00132 * 1 2 3 26 26 H 1.09000 * 109.46965 * 59.99881 * 1 2 3 27 27 H 1.08992 * 109.47016 * 240.00147 * 2 1 3 28 28 H 1.08994 * 109.47132 * 119.99424 * 2 1 3 29 29 H 0.97004 * 119.99558 * 300.91473 * 5 3 2 30 30 H 1.07997 * 119.72443 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.88534 * 180.27158 * 8 7 6 32 32 H 0.96995 * 119.99991 * 0.02562 * 10 9 8 33 33 H 0.97003 * 119.99929 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99683 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.11302 * 0.02562 * 20 6 5 36 36 H 1.09001 * 115.55020 * 38.96450 * 21 3 2 37 37 H 1.09002 * 117.50185 * 359.97438 * 22 21 3 38 38 H 1.09000 * 117.50030 * 145.01799 * 22 21 3 39 39 H 1.09007 * 117.49801 * 214.97904 * 23 21 3 40 40 H 1.08993 * 117.50084 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0976 -1.2519 6 6 0.8577 3.2479 -1.2222 7 6 0.7322 3.9752 -0.0372 8 6 -0.0439 5.1161 0.0071 9 6 -0.7133 5.5497 -1.1281 10 7 -1.4941 6.6972 -1.0821 11 6 -0.5965 4.8168 -2.3335 12 6 -1.2711 5.2465 -3.4950 13 1 -2.1527 5.8647 -3.4100 14 6 -0.7984 4.8724 -4.7573 15 7 0.4274 4.4336 -4.8935 16 14 -1.9164 4.9987 -6.2485 17 1 -2.3432 6.4095 -6.4290 18 1 -1.1827 4.5445 -7.4570 19 1 -3.1121 4.1420 -6.0447 20 6 0.1974 3.6560 -2.3633 21 6 3.5648 1.4444 0.1257 22 6 4.1625 1.8729 1.4673 23 6 4.2614 2.8006 0.2537 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.9470 1.7333 -2.1012 30 1 1.2499 3.6449 0.8512 31 1 -0.1299 5.6730 0.9284 32 1 -1.5721 7.1978 -0.2550 33 1 -1.9608 6.9985 -1.8773 34 1 0.7550 4.1738 -5.7688 35 1 0.2934 3.0885 -3.2771 36 1 4.0833 0.6627 -0.4295 37 1 3.4694 2.1539 2.2603 38 1 5.0743 1.3734 1.7946 39 1 5.2384 2.9110 -0.2170 40 1 3.6335 3.6915 0.2479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323788872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:24 Heat of formation + Delta-G solvation = 37.729088 kcal Electronic energy + Delta-G solvation = -19595.645868 eV Core-core repulsion = 16796.064436 eV Total energy + Delta-G solvation = -2799.581431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.58271 -37.25989 -34.81939 -33.45848 -32.96479 -30.62619 -29.38044 -27.15777 -25.18779 -24.59441 -22.10850 -21.56319 -21.20480 -19.95470 -19.44246 -17.10350 -15.97910 -15.72559 -15.30997 -15.06951 -14.63535 -14.43957 -14.10538 -13.53460 -12.80360 -12.56422 -12.35882 -11.98995 -11.91740 -11.65935 -11.38816 -11.37131 -11.16231 -11.04662 -10.98959 -10.67988 -10.53632 -10.30367 -10.08262 -9.97873 -9.68388 -9.59315 -9.22152 -9.01077 -7.67228 -7.21466 -6.61301 -5.50828 -4.03063 2.93616 3.13277 3.16194 3.34162 3.50557 3.97550 4.04289 4.66344 4.81884 4.86935 5.21406 5.32376 5.43045 5.45573 5.53940 5.61345 5.77415 5.85741 5.92992 6.14074 6.15444 6.21686 6.25976 6.37010 6.42615 6.46768 6.56644 6.69878 6.73153 7.15376 7.22118 7.35206 7.54293 7.75860 7.92224 8.06220 8.16947 8.49173 8.81003 8.94682 9.00456 9.03807 9.28780 9.37859 10.37658 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.005955 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.867290 B = 4700.702603 C = 5149.217180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.187 3.813 4 H 0.085 0.915 5 N -0.752 5.752 6 C 0.182 3.818 7 C -0.256 4.256 8 C -0.153 4.153 9 C 0.083 3.917 10 N -0.890 5.890 11 C 0.094 3.906 12 C -0.464 4.464 13 H 0.070 0.930 14 C 0.078 3.922 15 N -0.797 5.797 16 Si 0.900 3.100 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.201 4.201 21 C -0.164 4.164 22 C -0.183 4.183 23 C -0.166 4.166 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.386 0.614 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.373 0.627 33 H 0.388 0.612 34 H 0.275 0.725 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -5.346 6.591 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.080 3.920 4 H 0.103 0.897 5 N -0.385 5.385 6 C 0.084 3.916 7 C -0.279 4.279 8 C -0.177 4.177 9 C -0.017 4.017 10 N -0.432 5.432 11 C 0.089 3.911 12 C -0.495 4.495 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.424 5.424 16 Si 0.726 3.274 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.225 4.225 21 C -0.183 4.183 22 C -0.221 4.221 23 C -0.203 4.203 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.219 0.781 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.216 0.784 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.438 -5.508 6.560 9.230 hybrid contribution -0.370 0.233 -1.053 1.140 sum 3.068 -5.275 5.507 8.220 Atomic orbital electron populations 1.21679 0.95482 1.00364 1.02853 1.21886 0.96540 0.97213 1.01136 1.20292 0.89703 0.92314 0.89739 0.89698 1.44252 1.59099 1.29759 1.05391 1.17461 0.92851 0.86864 0.94414 1.19654 1.11273 1.00637 0.96351 1.19702 1.03594 0.99003 0.95416 1.17842 0.98919 0.90044 0.94944 1.41812 1.58192 1.29627 1.13598 1.16980 0.93280 0.90531 0.90326 1.19098 1.10945 1.29337 0.90115 0.91221 1.25735 0.94479 0.93374 1.00246 1.69878 1.14102 1.33214 1.25200 0.86513 0.81152 0.79410 0.80367 1.19377 1.20634 1.19169 1.20573 1.05445 0.99647 0.96833 1.22818 0.96865 0.98689 0.99975 1.22938 1.02506 1.04883 0.91745 1.22846 1.01599 0.94940 1.00943 0.93827 0.93139 0.91589 0.92449 0.92189 0.78087 0.89842 0.89988 0.80166 0.78401 0.91418 0.86442 0.88668 0.89108 0.89503 0.89629 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.80 37.16 0.36 -1.78 16 2 C -0.13 -1.76 5.61 -26.73 -0.15 -1.91 16 3 C 0.19 2.90 2.35 -67.93 -0.16 2.74 16 4 H 0.09 1.44 5.44 -51.93 -0.28 1.15 16 5 N -0.75 -14.05 4.47 -52.17 -0.23 -14.28 16 6 C 0.18 4.13 6.58 -83.77 -0.55 3.58 16 7 C -0.26 -5.70 9.18 -39.14 -0.36 -6.06 16 8 C -0.15 -3.49 9.86 -39.46 -0.39 -3.88 16 9 C 0.08 2.02 6.79 -83.22 -0.56 1.45 16 10 N -0.89 -18.31 8.98 32.75 0.29 -18.02 16 11 C 0.09 2.49 5.59 -106.66 -0.60 1.89 16 12 C -0.46 -12.19 8.52 -37.91 -0.32 -12.51 16 13 H 0.07 1.74 6.64 -52.48 -0.35 1.40 16 14 C 0.08 1.97 5.14 -17.33 -0.09 1.88 16 15 N -0.80 -20.80 10.92 55.54 0.61 -20.19 16 16 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.20 -5.15 8.54 -38.75 -0.33 -5.48 16 21 C -0.16 -2.28 5.31 -90.62 -0.48 -2.76 16 22 C -0.18 -2.29 10.18 -26.70 -0.27 -2.56 16 23 C -0.17 -2.42 10.20 -26.69 -0.27 -2.70 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 7.17 8.87 -40.82 -0.36 6.81 16 30 H 0.08 1.71 6.12 -52.49 -0.32 1.39 16 31 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.37 6.53 8.83 -40.82 -0.36 6.17 16 33 H 0.39 7.85 7.02 -40.82 -0.29 7.56 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.12 3.16 6.12 -52.49 -0.32 2.83 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -27.11 325.32 -9.68 -36.79 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -6.04 Total: 24.94 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -4.18 Total: -28.10 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.67 Total: -52.49 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.11 -9.68 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323788872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.519 kcal (2) G-P(sol) polarization free energy of solvation -27.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds