Wall clock time and date at job start Mon Mar 30 2020 07:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 H 1.08996 * 109.47450 * 55.00031 * 3 2 1 5 5 N 1.46505 * 109.47263 * 294.99887 * 3 2 1 6 6 C 1.39847 * 119.99766 * 120.91330 * 5 3 2 7 7 C 1.39603 * 119.84286 * 17.25580 * 6 5 3 8 8 C 1.38058 * 120.54883 * 179.72273 * 7 6 5 9 9 C 1.38738 * 120.21884 * 0.25158 * 8 7 6 10 10 N 1.38868 * 120.15847 * 179.97438 * 9 8 7 11 11 C 1.41557 * 119.67662 * 359.97438 * 9 8 7 12 12 C 1.41028 * 120.26831 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99929 * 335.89885 * 12 11 9 14 14 C 1.39886 * 119.99874 * 155.89252 * 12 11 9 15 15 N 1.30900 * 120.00320 * 342.26665 * 14 12 11 16 16 Si 1.86804 * 119.99612 * 162.26335 * 14 12 11 17 17 H 1.48502 * 109.46968 * 60.00346 * 16 14 12 18 18 H 1.48501 * 109.46744 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47362 * 300.00227 * 16 14 12 20 20 C 1.38013 * 119.83791 * 197.48722 * 6 5 3 21 21 C 1.53000 * 109.47117 * 174.99919 * 3 2 1 22 22 C 1.52993 * 117.50054 * 253.29774 * 21 3 2 23 23 C 1.52997 * 117.50023 * 184.63369 * 21 3 2 24 24 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47208 * 300.00132 * 1 2 3 26 26 H 1.09000 * 109.46965 * 59.99881 * 1 2 3 27 27 H 1.08992 * 109.47016 * 240.00147 * 2 1 3 28 28 H 1.08994 * 109.47132 * 119.99424 * 2 1 3 29 29 H 0.97004 * 119.99558 * 300.91473 * 5 3 2 30 30 H 1.07997 * 119.72443 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.88534 * 180.27158 * 8 7 6 32 32 H 0.96995 * 119.99991 * 0.02562 * 10 9 8 33 33 H 0.97003 * 119.99929 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99683 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.11302 * 0.02562 * 20 6 5 36 36 H 1.09001 * 115.55020 * 38.96450 * 21 3 2 37 37 H 1.09002 * 117.50185 * 359.97438 * 22 21 3 38 38 H 1.09000 * 117.50030 * 145.01799 * 22 21 3 39 39 H 1.09007 * 117.49801 * 214.97904 * 23 21 3 40 40 H 1.08993 * 117.50084 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0976 -1.2519 6 6 0.8577 3.2479 -1.2222 7 6 0.7322 3.9752 -0.0372 8 6 -0.0439 5.1161 0.0071 9 6 -0.7133 5.5497 -1.1281 10 7 -1.4941 6.6972 -1.0821 11 6 -0.5965 4.8168 -2.3335 12 6 -1.2711 5.2465 -3.4950 13 1 -2.1527 5.8647 -3.4100 14 6 -0.7984 4.8724 -4.7573 15 7 0.4274 4.4336 -4.8935 16 14 -1.9164 4.9987 -6.2485 17 1 -2.3432 6.4095 -6.4290 18 1 -1.1827 4.5445 -7.4570 19 1 -3.1121 4.1420 -6.0447 20 6 0.1974 3.6560 -2.3633 21 6 3.5648 1.4444 0.1257 22 6 4.1625 1.8729 1.4673 23 6 4.2614 2.8006 0.2537 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.9470 1.7333 -2.1012 30 1 1.2499 3.6449 0.8512 31 1 -0.1299 5.6730 0.9284 32 1 -1.5721 7.1978 -0.2550 33 1 -1.9608 6.9985 -1.8773 34 1 0.7550 4.1738 -5.7688 35 1 0.2934 3.0885 -3.2771 36 1 4.0833 0.6627 -0.4295 37 1 3.4694 2.1539 2.2603 38 1 5.0743 1.3734 1.7946 39 1 5.2384 2.9110 -0.2170 40 1 3.6335 3.6915 0.2479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323788872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:23 Heat of formation + Delta-G solvation = 23.220408 kcal Electronic energy + Delta-G solvation = -19596.275011 eV Core-core repulsion = 16796.064436 eV Total energy + Delta-G solvation = -2800.210575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08395 -38.79306 -36.22865 -35.32708 -34.41640 -32.15625 -31.27018 -28.69493 -26.90645 -26.23860 -23.32594 -23.06861 -22.46193 -21.57093 -20.94343 -18.91569 -17.72524 -17.29638 -16.81148 -16.58660 -16.37276 -15.76579 -15.31274 -14.93197 -14.47842 -14.13829 -13.90057 -13.72022 -13.48888 -13.18357 -12.98388 -12.90769 -12.68617 -12.42276 -12.31439 -12.12210 -12.00876 -11.68611 -11.65677 -11.34789 -11.21057 -10.92301 -10.88914 -10.83691 -9.29406 -9.12650 -8.49748 -7.25556 -5.96519 1.15168 1.40937 1.50041 1.55125 1.68951 2.27478 2.75533 2.93734 3.34744 3.71014 3.79223 3.98148 4.11810 4.23564 4.27256 4.41826 4.48029 4.58563 4.64790 4.84478 4.87009 4.96991 5.04889 5.12177 5.13862 5.24591 5.25739 5.33932 5.40693 5.41962 5.49321 5.51882 5.72458 5.95048 6.10462 6.23800 6.34629 6.60666 7.00033 7.11188 7.20856 7.34938 7.52401 7.68807 8.51028 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.005955 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.867290 B = 4700.702603 C = 5149.217180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.185 3.815 4 H 0.072 0.928 5 N -0.747 5.747 6 C 0.186 3.814 7 C -0.255 4.255 8 C -0.159 4.159 9 C 0.067 3.933 10 N -0.880 5.880 11 C 0.059 3.941 12 C -0.493 4.493 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.830 5.830 16 Si 0.972 3.028 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.267 1.267 20 C -0.225 4.225 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.185 4.185 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.385 0.615 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.389 0.611 33 H 0.389 0.611 34 H 0.279 0.721 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -6.294 7.715 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.079 3.921 4 H 0.090 0.910 5 N -0.379 5.379 6 C 0.086 3.914 7 C -0.279 4.279 8 C -0.183 4.183 9 C -0.035 4.035 10 N -0.424 5.424 11 C 0.054 3.946 12 C -0.524 4.524 13 H 0.090 0.910 14 C -0.178 4.178 15 N -0.457 5.457 16 Si 0.794 3.206 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.191 1.191 20 C -0.250 4.250 21 C -0.186 4.186 22 C -0.195 4.195 23 C -0.222 4.222 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.218 0.782 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.980 -6.459 7.721 10.825 hybrid contribution -0.477 0.495 -1.280 1.453 sum 3.503 -5.964 6.441 9.451 Atomic orbital electron populations 1.21648 0.96422 1.01151 1.00939 1.21837 0.95562 0.95904 1.02719 1.20459 0.91055 0.93021 0.87536 0.90953 1.44319 1.58154 1.28702 1.06764 1.17494 0.92393 0.87854 0.93665 1.19917 1.10862 1.00314 0.96800 1.20041 1.03022 0.99275 0.95984 1.18010 0.99723 0.91029 0.94749 1.41683 1.57462 1.28793 1.14489 1.17373 0.94253 0.91429 0.91571 1.19357 1.11495 1.30559 0.91021 0.90969 1.26534 0.95643 0.92758 1.02852 1.69964 1.15589 1.34131 1.26016 0.85415 0.78889 0.79575 0.76697 1.18536 1.19950 1.19141 1.20537 1.07164 1.00177 0.97135 1.22770 0.95457 0.98599 1.01769 1.23024 1.03116 1.02652 0.90681 1.22778 1.01650 0.94219 1.03552 0.91740 0.93559 0.94917 0.91821 0.89476 0.78213 0.87908 0.87539 0.78304 0.78307 0.91094 0.88566 0.87246 0.88821 0.86931 0.88787 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.80 71.98 0.71 -3.36 16 2 C -0.12 -3.05 5.61 30.60 0.17 -2.87 16 3 C 0.19 5.50 2.35 44.99 0.11 5.60 16 4 H 0.07 2.34 5.44 -2.39 -0.01 2.33 16 5 N -0.75 -28.11 4.47 -318.96 -1.43 -29.53 16 6 C 0.19 8.61 6.58 38.14 0.25 8.86 16 7 C -0.26 -11.34 9.18 22.56 0.21 -11.14 16 8 C -0.16 -7.20 9.86 22.35 0.22 -6.98 16 9 C 0.07 3.27 6.79 38.97 0.26 3.53 16 10 N -0.88 -36.12 8.98 -50.31 -0.45 -36.57 16 11 C 0.06 3.22 5.59 -21.18 -0.12 3.10 16 12 C -0.49 -26.71 8.52 23.35 0.20 -26.51 16 13 H 0.07 3.71 6.64 -2.91 -0.02 3.69 16 14 C 0.04 1.82 5.14 85.23 0.44 2.26 16 15 N -0.83 -44.75 10.92 21.82 0.24 -44.51 16 16 Si 0.97 39.64 29.59 68.60 2.03 41.67 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 C -0.23 -12.06 8.54 22.81 0.19 -11.86 16 21 C -0.17 -4.25 5.31 -10.80 -0.06 -4.31 16 22 C -0.16 -3.43 10.18 30.62 0.31 -3.12 16 23 C -0.18 -5.14 10.20 30.62 0.31 -4.82 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.39 14.56 8.87 -92.70 -0.82 13.74 16 30 H 0.10 4.11 6.12 -2.91 -0.02 4.09 16 31 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.39 13.23 8.83 -92.71 -0.82 12.41 16 33 H 0.39 15.83 7.02 -92.71 -0.65 15.18 16 34 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 35 H 0.10 5.47 6.12 -2.91 -0.02 5.45 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 2.41 8.14 -2.38 -0.02 2.40 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -60.03 325.32 2.37 -57.66 By element: Atomic # 1 Polarization: 64.13 SS G_CDS: -1.23 Total: 62.91 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 3.21 Total: -51.62 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -1.64 Total: -110.61 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -60.03 2.37 -57.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323788872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.876 kcal (2) G-P(sol) polarization free energy of solvation -60.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds