Wall clock time and date at job start Mon Mar 30 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 H 1.09000 * 109.46907 * 303.57721 * 3 2 1 5 5 N 1.46496 * 109.47361 * 63.57386 * 3 2 1 6 6 C 1.39852 * 120.00265 * 223.23979 * 5 3 2 7 7 C 1.39608 * 119.84106 * 353.77321 * 6 5 3 8 8 C 1.38058 * 120.54618 * 180.29770 * 7 6 5 9 9 C 1.38729 * 120.22364 * 359.45228 * 8 7 6 10 10 N 1.38869 * 120.16337 * 180.25330 * 9 8 7 11 11 C 1.41557 * 119.67683 * 0.27083 * 9 8 7 12 12 C 1.41024 * 120.27294 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99726 * 327.69554 * 12 11 9 14 14 C 1.39881 * 120.00372 * 147.69455 * 12 11 9 15 15 N 1.30899 * 120.00186 * 345.64065 * 14 12 11 16 16 Si 1.86800 * 119.99885 * 165.63703 * 14 12 11 17 17 H 1.48503 * 109.47083 * 94.97205 * 16 14 12 18 18 H 1.48506 * 109.47236 * 214.96550 * 16 14 12 19 19 H 1.48494 * 109.47467 * 334.96778 * 16 14 12 20 20 C 1.38015 * 119.84114 * 173.52301 * 6 5 3 21 21 C 1.53003 * 109.47501 * 183.57939 * 3 2 1 22 22 C 1.52998 * 117.49671 * 244.98994 * 21 3 2 23 23 C 1.52997 * 117.49935 * 176.32817 * 21 3 2 24 24 H 1.09003 * 109.47412 * 302.56584 * 1 2 3 25 25 H 1.09000 * 109.46917 * 62.56826 * 1 2 3 26 26 H 1.08999 * 109.47094 * 182.56203 * 1 2 3 27 27 H 1.09003 * 109.47352 * 239.99516 * 2 1 3 28 28 H 1.09009 * 109.46990 * 119.99312 * 2 1 3 29 29 H 0.97005 * 120.00143 * 43.24282 * 5 3 2 30 30 H 1.07998 * 119.72328 * 0.04816 * 7 6 5 31 31 H 1.07999 * 119.88244 * 179.72344 * 8 7 6 32 32 H 0.97001 * 119.99888 * 359.97438 * 10 9 8 33 33 H 0.96993 * 120.00095 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00146 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.11415 * 0.02562 * 20 6 5 36 36 H 1.08994 * 115.54875 * 30.65504 * 21 3 2 37 37 H 1.09000 * 117.50157 * 359.97438 * 22 21 3 38 38 H 1.08997 * 117.49897 * 145.01762 * 22 21 3 39 39 H 1.08998 * 117.50128 * 214.97523 * 23 21 3 40 40 H 1.08996 * 117.49935 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6253 1.9744 -0.8562 5 7 1.6233 2.1078 1.2368 6 6 1.1246 3.4137 1.1946 7 6 1.1461 4.1271 -0.0053 8 6 0.6632 5.4192 -0.0621 9 6 0.1397 6.0196 1.0737 10 7 -0.3504 7.3176 1.0139 11 6 0.1080 5.3030 2.2940 12 6 -0.4218 5.9010 3.4561 13 1 -0.3245 6.9658 3.6078 14 6 -1.0734 5.1150 4.4123 15 7 -1.4417 3.8944 4.1156 16 14 -1.4180 5.8072 6.1128 17 1 -2.7934 6.3658 6.1504 18 1 -1.2957 4.7247 7.1220 19 1 -0.4389 6.8812 6.4178 20 6 0.6089 3.9892 2.3381 21 6 3.5674 1.4434 -0.0901 22 6 4.3453 1.9919 1.1078 23 6 4.2683 2.7997 -0.1902 24 1 -0.3634 0.5532 0.8661 25 1 -0.3633 0.4734 -0.9121 26 1 -0.3633 -1.0266 0.0459 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6933 1.6426 2.0852 30 1 1.5475 3.6657 -0.8954 31 1 0.6892 5.9628 -0.9949 32 1 -0.3270 7.8068 0.1766 33 1 -0.7156 7.7352 1.8095 34 1 -1.8939 3.3495 4.7786 35 1 0.5905 3.4330 3.2637 36 1 4.0066 0.6084 -0.6357 37 1 3.7690 2.3525 1.9598 38 1 5.2965 1.5180 1.3499 39 1 5.1689 2.8569 -0.8014 40 1 3.6413 3.6913 -0.1923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323788873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:26 Heat of formation + Delta-G solvation = 40.568722 kcal Electronic energy + Delta-G solvation = -19748.364281 eV Core-core repulsion = 16948.905985 eV Total energy + Delta-G solvation = -2799.458296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.78047 -37.19751 -34.50332 -33.38756 -33.10669 -30.61531 -29.41880 -27.13634 -25.28521 -24.75116 -22.16287 -21.43400 -21.11540 -20.05311 -19.10912 -17.05935 -15.96282 -15.60385 -15.55142 -15.07190 -14.70130 -14.62062 -13.89958 -13.41831 -12.91562 -12.47219 -12.35433 -11.91376 -11.89768 -11.78256 -11.36416 -11.22129 -11.05764 -11.02974 -10.95549 -10.86337 -10.58231 -10.37405 -9.98459 -9.87031 -9.65635 -9.52457 -9.18697 -9.02116 -7.72252 -7.15705 -6.56701 -5.49325 -4.05724 2.93163 3.15552 3.19958 3.30631 3.48626 4.07333 4.13750 4.53512 4.85345 4.97125 5.31707 5.38862 5.44513 5.46665 5.50247 5.63778 5.87000 5.93907 6.03604 6.06668 6.12783 6.23700 6.34069 6.39130 6.45206 6.59684 6.66333 6.67764 6.70271 7.15553 7.17025 7.34123 7.50888 7.74557 7.88257 7.99378 8.16646 8.48873 8.76965 8.93833 8.98043 9.02285 9.27472 9.36176 10.44427 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.006357 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.437541 B = 4403.478703 C = 4910.415130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.186 3.814 4 H 0.085 0.915 5 N -0.750 5.750 6 C 0.179 3.821 7 C -0.250 4.250 8 C -0.155 4.155 9 C 0.089 3.911 10 N -0.889 5.889 11 C 0.098 3.902 12 C -0.471 4.471 13 H 0.069 0.931 14 C 0.078 3.922 15 N -0.805 5.805 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.192 4.192 21 C -0.173 4.173 22 C -0.172 4.172 23 C -0.179 4.179 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.386 0.614 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.374 0.626 33 H 0.389 0.611 34 H 0.273 0.727 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 -4.653 -5.149 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.079 3.921 4 H 0.103 0.897 5 N -0.383 5.383 6 C 0.081 3.919 7 C -0.274 4.274 8 C -0.179 4.179 9 C -0.012 4.012 10 N -0.431 5.431 11 C 0.093 3.907 12 C -0.503 4.503 13 H 0.087 0.913 14 C -0.137 4.137 15 N -0.432 5.432 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.216 4.216 21 C -0.193 4.193 22 C -0.209 4.209 23 C -0.216 4.216 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.220 0.780 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.217 0.783 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.391 -4.952 -5.207 8.983 hybrid contribution -0.310 0.333 1.054 1.148 sum 5.081 -4.619 -4.154 8.025 Atomic orbital electron populations 1.21709 0.95383 1.00603 1.02892 1.21796 0.96510 0.96744 1.01378 1.20206 0.89902 0.92189 0.89847 0.89720 1.44369 1.73595 1.13784 1.06572 1.17476 0.96196 0.83845 0.94367 1.19681 1.16169 0.95864 0.95690 1.19731 1.06912 0.95884 0.95407 1.17915 1.02526 0.86966 0.93809 1.41817 1.74197 1.14391 1.12682 1.16949 0.91884 0.91592 0.90283 1.19068 1.33347 0.94965 1.02891 0.91251 1.25690 0.93990 0.94592 0.99423 1.69863 1.30215 1.08698 1.34432 0.86474 0.79094 0.79527 0.82509 1.20033 1.20429 1.18849 1.20373 1.07470 0.97722 0.96084 1.22982 0.95994 0.97159 1.03178 1.22878 1.00604 1.04120 0.93273 1.22994 1.02037 0.96102 1.00484 0.91440 0.93113 0.93716 0.92038 0.92256 0.78038 0.89356 0.89879 0.80156 0.78312 0.91603 0.87345 0.88688 0.87830 0.90332 0.90168 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.82 37.15 0.36 -1.76 16 2 C -0.13 -1.67 5.56 -26.74 -0.15 -1.81 16 3 C 0.19 2.85 2.39 -67.93 -0.16 2.69 16 4 H 0.08 1.42 5.76 -51.93 -0.30 1.12 16 5 N -0.75 -13.56 2.81 -52.17 -0.15 -13.71 16 6 C 0.18 3.97 6.63 -83.77 -0.56 3.42 16 7 C -0.25 -5.46 7.81 -39.14 -0.31 -5.77 16 8 C -0.15 -3.49 9.86 -39.47 -0.39 -3.88 16 9 C 0.09 2.14 6.79 -83.23 -0.56 1.57 16 10 N -0.89 -18.22 8.98 32.75 0.29 -17.93 16 11 C 0.10 2.57 5.50 -106.66 -0.59 1.99 16 12 C -0.47 -12.37 8.32 -37.91 -0.32 -12.68 16 13 H 0.07 1.75 6.93 -52.48 -0.36 1.39 16 14 C 0.08 1.99 5.15 -17.33 -0.09 1.90 16 15 N -0.80 -21.17 11.30 55.54 0.63 -20.55 16 16 Si 0.90 19.13 29.58 -169.99 -5.03 14.10 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.19 -4.86 8.46 -38.75 -0.33 -5.19 16 21 C -0.17 -2.43 5.73 -90.62 -0.52 -2.94 16 22 C -0.17 -2.51 9.84 -26.69 -0.26 -2.78 16 23 C -0.18 -2.67 10.22 -26.69 -0.27 -2.95 16 24 H 0.07 1.14 7.64 -51.93 -0.40 0.75 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.39 6.89 8.58 -40.82 -0.35 6.54 16 30 H 0.09 1.77 5.68 -52.49 -0.30 1.47 16 31 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.37 6.49 8.83 -40.82 -0.36 6.13 16 33 H 0.39 7.87 7.17 -40.82 -0.29 7.58 16 34 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.11 2.88 6.63 -52.49 -0.35 2.53 16 36 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.10 1.73 6.78 -51.93 -0.35 1.37 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.11 1.86 6.30 -51.93 -0.33 1.54 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -27.00 319.67 -9.47 -36.47 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -5.90 Total: 24.99 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -4.14 Total: -28.20 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.78 Total: -52.18 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.00 -9.47 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323788873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.043 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds