Wall clock time and date at job start Mon Mar 30 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 H 1.09000 * 109.46907 * 303.57721 * 3 2 1 5 5 N 1.46496 * 109.47361 * 63.57386 * 3 2 1 6 6 C 1.39852 * 120.00265 * 223.23979 * 5 3 2 7 7 C 1.39608 * 119.84106 * 353.77321 * 6 5 3 8 8 C 1.38058 * 120.54618 * 180.29770 * 7 6 5 9 9 C 1.38729 * 120.22364 * 359.45228 * 8 7 6 10 10 N 1.38869 * 120.16337 * 180.25330 * 9 8 7 11 11 C 1.41557 * 119.67683 * 0.27083 * 9 8 7 12 12 C 1.41024 * 120.27294 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99726 * 327.69554 * 12 11 9 14 14 C 1.39881 * 120.00372 * 147.69455 * 12 11 9 15 15 N 1.30899 * 120.00186 * 345.64065 * 14 12 11 16 16 Si 1.86800 * 119.99885 * 165.63703 * 14 12 11 17 17 H 1.48503 * 109.47083 * 94.97205 * 16 14 12 18 18 H 1.48506 * 109.47236 * 214.96550 * 16 14 12 19 19 H 1.48494 * 109.47467 * 334.96778 * 16 14 12 20 20 C 1.38015 * 119.84114 * 173.52301 * 6 5 3 21 21 C 1.53003 * 109.47501 * 183.57939 * 3 2 1 22 22 C 1.52998 * 117.49671 * 244.98994 * 21 3 2 23 23 C 1.52997 * 117.49935 * 176.32817 * 21 3 2 24 24 H 1.09003 * 109.47412 * 302.56584 * 1 2 3 25 25 H 1.09000 * 109.46917 * 62.56826 * 1 2 3 26 26 H 1.08999 * 109.47094 * 182.56203 * 1 2 3 27 27 H 1.09003 * 109.47352 * 239.99516 * 2 1 3 28 28 H 1.09009 * 109.46990 * 119.99312 * 2 1 3 29 29 H 0.97005 * 120.00143 * 43.24282 * 5 3 2 30 30 H 1.07998 * 119.72328 * 0.04816 * 7 6 5 31 31 H 1.07999 * 119.88244 * 179.72344 * 8 7 6 32 32 H 0.97001 * 119.99888 * 359.97438 * 10 9 8 33 33 H 0.96993 * 120.00095 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00146 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.11415 * 0.02562 * 20 6 5 36 36 H 1.08994 * 115.54875 * 30.65504 * 21 3 2 37 37 H 1.09000 * 117.50157 * 359.97438 * 22 21 3 38 38 H 1.08997 * 117.49897 * 145.01762 * 22 21 3 39 39 H 1.08998 * 117.50128 * 214.97523 * 23 21 3 40 40 H 1.08996 * 117.49935 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6253 1.9744 -0.8562 5 7 1.6233 2.1078 1.2368 6 6 1.1246 3.4137 1.1946 7 6 1.1461 4.1271 -0.0053 8 6 0.6632 5.4192 -0.0621 9 6 0.1397 6.0196 1.0737 10 7 -0.3504 7.3176 1.0139 11 6 0.1080 5.3030 2.2940 12 6 -0.4218 5.9010 3.4561 13 1 -0.3245 6.9658 3.6078 14 6 -1.0734 5.1150 4.4123 15 7 -1.4417 3.8944 4.1156 16 14 -1.4180 5.8072 6.1128 17 1 -2.7934 6.3658 6.1504 18 1 -1.2957 4.7247 7.1220 19 1 -0.4389 6.8812 6.4178 20 6 0.6089 3.9892 2.3381 21 6 3.5674 1.4434 -0.0901 22 6 4.3453 1.9919 1.1078 23 6 4.2683 2.7997 -0.1902 24 1 -0.3634 0.5532 0.8661 25 1 -0.3633 0.4734 -0.9121 26 1 -0.3633 -1.0266 0.0459 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6933 1.6426 2.0852 30 1 1.5475 3.6657 -0.8954 31 1 0.6892 5.9628 -0.9949 32 1 -0.3270 7.8068 0.1766 33 1 -0.7156 7.7352 1.8095 34 1 -1.8939 3.3495 4.7786 35 1 0.5905 3.4330 3.2637 36 1 4.0066 0.6084 -0.6357 37 1 3.7690 2.3525 1.9598 38 1 5.2965 1.5180 1.3499 39 1 5.1689 2.8569 -0.8014 40 1 3.6413 3.6913 -0.1923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323788873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:26 Heat of formation + Delta-G solvation = 26.410154 kcal Electronic energy + Delta-G solvation = -19748.978242 eV Core-core repulsion = 16948.905985 eV Total energy + Delta-G solvation = -2800.072257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25951 -38.78707 -35.91527 -35.25053 -34.53323 -32.14280 -31.29931 -28.64068 -26.92760 -26.45961 -23.52816 -22.85632 -22.42809 -21.71342 -20.55858 -18.84706 -17.70734 -17.27822 -16.89128 -16.58275 -16.38242 -16.10490 -15.10805 -14.86180 -14.47664 -14.12180 -13.91141 -13.71874 -13.43279 -13.17466 -12.99786 -12.89404 -12.71022 -12.39301 -12.24651 -12.14365 -12.05641 -11.75138 -11.65707 -11.41297 -11.17072 -10.91057 -10.90204 -10.61785 -9.32719 -9.05746 -8.46216 -7.22240 -5.99684 1.14809 1.40651 1.50159 1.54129 1.67617 2.28824 2.86825 2.97227 3.18017 3.79518 3.81161 3.96493 4.18655 4.20328 4.34218 4.38893 4.50987 4.61985 4.71847 4.82859 4.91092 4.97369 5.02493 5.12873 5.19629 5.26277 5.28172 5.36331 5.44037 5.45911 5.49111 5.51292 5.71485 5.94462 6.09033 6.19173 6.34177 6.60388 7.02532 7.10344 7.18554 7.32334 7.50675 7.69013 8.56648 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.006357 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.437541 B = 4403.478703 C = 4910.415130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.181 3.819 4 H 0.073 0.927 5 N -0.743 5.743 6 C 0.185 3.815 7 C -0.247 4.247 8 C -0.161 4.161 9 C 0.072 3.928 10 N -0.880 5.880 11 C 0.062 3.938 12 C -0.498 4.498 13 H 0.070 0.930 14 C 0.035 3.965 15 N -0.839 5.839 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.262 1.262 20 C -0.214 4.214 21 C -0.159 4.159 22 C -0.175 4.175 23 C -0.186 4.186 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.386 0.614 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.390 0.610 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -5.600 -6.271 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.075 3.925 4 H 0.091 0.909 5 N -0.375 5.375 6 C 0.084 3.916 7 C -0.270 4.270 8 C -0.185 4.185 9 C -0.031 4.031 10 N -0.423 5.423 11 C 0.057 3.943 12 C -0.530 4.530 13 H 0.088 0.912 14 C -0.177 4.177 15 N -0.468 5.468 16 Si 0.793 3.207 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.186 1.186 20 C -0.239 4.239 21 C -0.179 4.179 22 C -0.213 4.213 23 C -0.222 4.222 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.219 0.781 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.443 -5.903 -6.362 10.809 hybrid contribution -0.579 0.578 1.279 1.518 sum 5.865 -5.326 -5.083 9.413 Atomic orbital electron populations 1.21675 0.96427 1.01246 1.01029 1.21759 0.95436 0.95261 1.03140 1.20411 0.91142 0.93135 0.87785 0.90916 1.44405 1.72792 1.12437 1.07854 1.17490 0.95191 0.85347 0.93563 1.19948 1.15225 0.95744 0.96127 1.20079 1.06150 0.96301 0.95959 1.18081 1.03154 0.88185 0.93631 1.41693 1.73685 1.13399 1.13566 1.17323 0.92984 0.92545 0.91478 1.19294 1.34462 0.95210 1.04032 0.91244 1.26470 0.93508 0.94824 1.02869 1.69952 1.31191 1.09959 1.35657 0.85384 0.78979 0.78731 0.77642 1.19325 1.19982 1.18626 1.20312 1.09279 0.97969 0.96341 1.22986 0.94635 0.97555 1.02698 1.22846 1.01442 1.04501 0.92466 1.22966 1.02725 0.95417 1.01141 0.94902 0.93476 0.91704 0.89019 0.91564 0.78081 0.87299 0.87408 0.78293 0.78294 0.91348 0.89690 0.85623 0.90545 0.88119 0.87905 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.82 71.98 0.71 -3.28 16 2 C -0.12 -2.80 5.56 30.59 0.17 -2.63 16 3 C 0.18 5.23 2.39 44.99 0.11 5.34 16 4 H 0.07 2.30 5.76 -2.39 -0.01 2.29 16 5 N -0.74 -27.00 2.81 -318.97 -0.90 -27.89 16 6 C 0.18 8.34 6.63 38.14 0.25 8.59 16 7 C -0.25 -10.69 7.81 22.56 0.18 -10.51 16 8 C -0.16 -7.16 9.86 22.34 0.22 -6.94 16 9 C 0.07 3.48 6.79 38.96 0.26 3.74 16 10 N -0.88 -36.07 8.98 -50.31 -0.45 -36.53 16 11 C 0.06 3.36 5.50 -21.18 -0.12 3.24 16 12 C -0.50 -27.07 8.32 23.35 0.19 -26.87 16 13 H 0.07 3.62 6.93 -2.91 -0.02 3.60 16 14 C 0.04 1.84 5.15 85.23 0.44 2.27 16 15 N -0.84 -45.85 11.30 21.82 0.25 -45.61 16 16 Si 0.97 40.18 29.58 68.60 2.03 42.21 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 C -0.21 -11.33 8.46 22.81 0.19 -11.14 16 21 C -0.16 -4.00 5.73 -10.79 -0.06 -4.06 16 22 C -0.18 -4.83 9.84 30.62 0.30 -4.53 16 23 C -0.19 -5.16 10.22 30.62 0.31 -4.85 16 24 H 0.03 1.11 7.64 -2.39 -0.02 1.09 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.39 14.09 8.58 -92.70 -0.80 13.29 16 30 H 0.11 4.22 5.68 -2.91 -0.02 4.20 16 31 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.39 13.20 8.83 -92.71 -0.82 12.38 16 33 H 0.39 15.93 7.17 -92.71 -0.66 15.26 16 34 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 35 H 0.08 4.80 6.63 -2.91 -0.02 4.78 16 36 H 0.13 2.48 8.08 -2.39 -0.02 2.46 16 37 H 0.08 2.55 6.78 -2.39 -0.02 2.53 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.08 2.65 6.30 -2.39 -0.02 2.63 16 Total: -1.00 -60.18 319.67 2.88 -57.30 By element: Atomic # 1 Polarization: 63.34 SS G_CDS: -1.21 Total: 62.14 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 3.16 Total: -51.61 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -1.10 Total: -110.02 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -60.18 2.88 -57.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323788873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.707 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds