Wall clock time and date at job start Mon Mar 30 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38227 * 119.61601 * 2 1 4 4 C 1.38625 * 119.16246 * 179.97438 * 3 2 1 5 5 C 1.38679 * 118.41866 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.41774 * 180.02562 * 5 4 3 7 7 C 1.53123 * 109.52128 * 120.00139 * 6 5 4 8 8 C 1.53039 * 109.31189 * 177.58251 * 7 6 5 9 9 N 1.46856 * 109.51787 * 300.79882 * 8 7 6 10 10 C 1.46902 * 110.99619 * 185.84053 * 9 8 7 11 11 C 1.50702 * 109.46821 * 170.00380 * 10 9 8 12 12 H 1.07993 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99681 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47083 * 90.00410 * 15 13 11 17 17 H 1.48502 * 109.47071 * 210.00076 * 15 13 11 18 18 H 1.48503 * 109.47343 * 330.00065 * 15 13 11 19 19 C 1.46846 * 111.19871 * 61.74404 * 9 8 7 20 20 C 1.53030 * 109.52435 * 298.25760 * 19 9 8 21 21 C 1.38180 * 119.16394 * 0.27883 * 5 4 3 22 22 N 1.31854 * 119.61794 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.47695 * 90.00532 * 1 2 3 24 24 H 1.09002 * 109.47220 * 210.00156 * 1 2 3 25 25 H 1.09004 * 109.47337 * 329.99787 * 1 2 3 26 26 H 1.08003 * 120.41984 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.79551 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.57506 * 359.84378 * 6 5 4 29 29 H 1.09002 * 109.50371 * 57.61800 * 7 6 5 30 30 H 1.09003 * 109.50070 * 297.53960 * 7 6 5 31 31 H 1.09000 * 109.46148 * 60.81334 * 8 7 6 32 32 H 1.09001 * 109.46317 * 180.79820 * 8 7 6 33 33 H 1.08998 * 109.46964 * 289.99708 * 10 9 8 34 34 H 1.08994 * 109.46972 * 50.00165 * 10 9 8 35 35 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46012 * 58.27074 * 19 9 8 37 37 H 1.08997 * 109.46257 * 178.24394 * 19 9 8 38 38 H 1.08997 * 109.50569 * 179.12357 * 20 19 9 39 39 H 1.09007 * 109.50504 * 299.19535 * 20 19 9 40 40 H 1.07998 * 119.61924 * 179.70246 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 5.7322 -0.0986 0.0028 7 6 6.2115 -0.8409 1.2534 8 6 7.7372 -0.9565 1.2197 9 7 8.1476 -1.6827 0.0110 10 6 9.5950 -1.9337 0.0138 11 6 9.9423 -2.8833 -1.1037 12 1 9.1654 -3.2626 -1.7509 13 6 11.2519 -3.2677 -1.2997 14 7 12.1977 -2.8060 -0.5112 15 14 11.6822 -4.4452 -2.6845 16 1 11.9855 -3.6720 -3.9154 17 1 12.8701 -5.2489 -2.2995 18 1 10.5332 -5.3508 -2.9392 19 6 7.7403 -0.9650 -1.2037 20 6 6.2149 -0.8496 -1.2422 21 6 3.4766 -1.1947 -0.0038 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6506 2.1374 -0.0004 27 1 4.1365 2.1140 0.0001 28 1 6.1410 0.9118 -0.0001 29 1 5.7714 -1.8379 1.2759 30 1 5.9080 -0.2889 2.1429 31 1 8.1768 0.0408 1.2111 32 1 8.0800 -1.4971 2.1019 33 1 10.1271 -0.9934 -0.1299 34 1 9.8856 -2.3735 0.9679 35 1 13.1190 -3.0768 -0.6489 36 1 8.1801 0.0324 -1.2008 37 1 8.0854 -1.5115 -2.0813 38 1 5.9137 -0.3033 -2.1361 39 1 5.7747 -1.8467 -1.2598 40 1 3.9755 -2.1526 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335846550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:12 Heat of formation + Delta-G solvation = 17.959588 kcal Electronic energy + Delta-G solvation = -19061.134425 eV Core-core repulsion = 16260.695724 eV Total energy + Delta-G solvation = -2800.438701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50650 -38.26929 -34.74007 -32.72677 -32.34564 -31.33388 -30.36078 -28.01431 -26.25959 -24.15873 -23.37913 -22.55113 -21.74690 -20.75748 -19.17780 -16.66696 -16.31346 -16.17405 -15.51377 -14.82020 -14.57832 -14.21528 -14.10071 -13.76919 -13.44404 -13.26891 -13.21134 -12.71490 -12.45376 -12.37512 -12.03608 -11.85651 -11.71900 -11.28789 -10.88793 -10.80633 -10.65819 -10.46598 -10.26122 -10.09913 -9.76984 -9.66903 -9.41405 -9.14374 -8.70369 -8.43212 -7.21172 -6.02237 -4.03501 1.05975 1.24501 3.32157 3.38520 3.43098 3.71664 4.23430 4.43027 4.60179 4.73548 4.83433 4.93624 5.00722 5.16384 5.23605 5.33428 5.36850 5.37905 5.42716 5.54841 5.69063 5.72454 5.88260 5.89579 5.97938 6.02966 6.10423 6.17172 6.22445 6.34453 6.42080 6.51164 6.66946 6.73551 6.76251 7.32230 7.36359 7.81540 7.97148 8.11242 8.22739 8.57081 9.04482 9.60829 11.08687 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041511 B = 0.003779 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.359833 B = 7408.115433 C = 7721.012202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.111 3.889 3 C -0.173 4.173 4 C -0.075 4.075 5 C -0.121 4.121 6 C -0.045 4.045 7 C -0.104 4.104 8 C 0.056 3.944 9 N -0.536 5.536 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.065 3.935 20 C -0.107 4.107 21 C 0.111 3.889 22 N -0.484 5.484 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.069 0.931 33 H -0.010 1.010 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 8.863 1.649 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.026 4.026 3 C -0.193 4.193 4 C -0.101 4.101 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.142 4.142 8 C -0.073 4.073 9 N -0.261 5.261 10 C 0.068 3.932 11 C -0.545 4.545 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.063 4.063 20 C -0.145 4.145 21 C -0.046 4.046 22 N -0.193 5.193 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.007 0.993 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.444 7.615 1.692 20.950 hybrid contribution 1.396 1.066 -0.690 1.887 sum -18.048 8.681 1.002 20.052 Atomic orbital electron populations 1.20672 0.89176 1.03186 1.02846 1.21256 0.96898 0.88562 0.95933 1.21896 0.94836 0.99079 1.03453 1.21524 0.94218 0.97956 0.96354 1.20997 0.97411 0.93916 0.99987 1.20227 0.88733 1.00355 0.97100 1.21652 0.96438 1.00408 0.95720 1.22001 0.93874 0.96292 0.95152 1.62042 1.19481 1.44824 0.99782 1.19704 0.80117 0.95385 0.97997 1.21174 0.92617 1.26676 1.14073 0.91826 1.24995 0.96409 0.96635 0.96623 1.69961 1.00728 1.44862 1.38360 0.86510 0.77981 0.80976 0.82041 1.20771 1.21275 1.19723 1.21926 0.92752 0.96129 0.95493 1.21726 0.97017 1.00224 0.95539 1.22691 0.88789 0.98558 0.94581 1.67546 1.10024 1.29277 1.12492 0.90664 0.90621 0.91009 0.85191 0.85063 0.90839 0.91041 0.92403 0.96142 0.91242 0.99250 0.95200 0.92948 0.96346 0.89660 0.92378 0.91095 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.00 0.37 -0.45 16 2 C 0.11 1.27 6.78 -82.59 -0.56 0.71 16 3 C -0.17 -1.76 9.74 -39.44 -0.38 -2.14 16 4 C -0.07 -0.82 9.81 -39.28 -0.39 -1.20 16 5 C -0.12 -1.52 4.80 -104.48 -0.50 -2.02 16 6 C -0.04 -0.60 2.45 -91.61 -0.22 -0.83 16 7 C -0.10 -1.50 5.23 -26.65 -0.14 -1.63 16 8 C 0.06 0.98 5.46 -3.83 -0.02 0.96 16 9 N -0.54 -11.40 4.65 -236.11 -1.10 -12.49 16 10 C 0.19 5.02 4.72 -4.97 -0.02 5.00 16 11 C -0.51 -14.18 8.43 -34.44 -0.29 -14.48 16 12 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 15 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.07 1.24 5.30 -3.84 -0.02 1.22 16 20 C -0.11 -1.62 5.23 -26.61 -0.14 -1.75 16 21 C 0.11 1.48 9.86 -17.55 -0.17 1.30 16 22 N -0.48 -6.60 10.27 -9.47 -0.10 -6.69 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 27 H 0.13 1.18 8.01 -52.49 -0.42 0.76 16 28 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 29 H 0.07 1.05 7.36 -51.93 -0.38 0.67 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 33 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 34 H 0.03 0.83 7.99 -51.93 -0.41 0.42 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 1.77 6.70 -51.93 -0.35 1.43 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.09 7.32 -51.92 -0.38 0.71 16 40 H 0.16 2.02 7.08 -52.49 -0.37 1.65 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -30.67 321.44 -9.68 -40.35 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.45 Total: -2.71 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.59 Total: -13.86 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.46 Total: -45.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.67 -9.68 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.314 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds