Wall clock time and date at job start Mon Mar 30 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38227 * 119.61601 * 2 1 4 4 C 1.38625 * 119.16246 * 179.97438 * 3 2 1 5 5 C 1.38679 * 118.41866 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.41774 * 180.02562 * 5 4 3 7 7 C 1.53123 * 109.52128 * 120.00139 * 6 5 4 8 8 C 1.53039 * 109.31189 * 177.58251 * 7 6 5 9 9 N 1.46856 * 109.51787 * 300.79882 * 8 7 6 10 10 C 1.46902 * 110.99619 * 185.84053 * 9 8 7 11 11 C 1.50702 * 109.46821 * 170.00380 * 10 9 8 12 12 H 1.07993 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99681 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47083 * 90.00410 * 15 13 11 17 17 H 1.48502 * 109.47071 * 210.00076 * 15 13 11 18 18 H 1.48503 * 109.47343 * 330.00065 * 15 13 11 19 19 C 1.46846 * 111.19871 * 61.74404 * 9 8 7 20 20 C 1.53030 * 109.52435 * 298.25760 * 19 9 8 21 21 C 1.38180 * 119.16394 * 0.27883 * 5 4 3 22 22 N 1.31854 * 119.61794 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.47695 * 90.00532 * 1 2 3 24 24 H 1.09002 * 109.47220 * 210.00156 * 1 2 3 25 25 H 1.09004 * 109.47337 * 329.99787 * 1 2 3 26 26 H 1.08003 * 120.41984 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.79551 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.57506 * 359.84378 * 6 5 4 29 29 H 1.09002 * 109.50371 * 57.61800 * 7 6 5 30 30 H 1.09003 * 109.50070 * 297.53960 * 7 6 5 31 31 H 1.09000 * 109.46148 * 60.81334 * 8 7 6 32 32 H 1.09001 * 109.46317 * 180.79820 * 8 7 6 33 33 H 1.08998 * 109.46964 * 289.99708 * 10 9 8 34 34 H 1.08994 * 109.46972 * 50.00165 * 10 9 8 35 35 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46012 * 58.27074 * 19 9 8 37 37 H 1.08997 * 109.46257 * 178.24394 * 19 9 8 38 38 H 1.08997 * 109.50569 * 179.12357 * 20 19 9 39 39 H 1.09007 * 109.50504 * 299.19535 * 20 19 9 40 40 H 1.07998 * 119.61924 * 179.70246 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 5.7322 -0.0986 0.0028 7 6 6.2115 -0.8409 1.2534 8 6 7.7372 -0.9565 1.2197 9 7 8.1476 -1.6827 0.0110 10 6 9.5950 -1.9337 0.0138 11 6 9.9423 -2.8833 -1.1037 12 1 9.1654 -3.2626 -1.7509 13 6 11.2519 -3.2677 -1.2997 14 7 12.1977 -2.8060 -0.5112 15 14 11.6822 -4.4452 -2.6845 16 1 11.9855 -3.6720 -3.9154 17 1 12.8701 -5.2489 -2.2995 18 1 10.5332 -5.3508 -2.9392 19 6 7.7403 -0.9650 -1.2037 20 6 6.2149 -0.8496 -1.2422 21 6 3.4766 -1.1947 -0.0038 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6506 2.1374 -0.0004 27 1 4.1365 2.1140 0.0001 28 1 6.1410 0.9118 -0.0001 29 1 5.7714 -1.8379 1.2759 30 1 5.9080 -0.2889 2.1429 31 1 8.1768 0.0408 1.2111 32 1 8.0800 -1.4971 2.1019 33 1 10.1271 -0.9934 -0.1299 34 1 9.8856 -2.3735 0.9679 35 1 13.1190 -3.0768 -0.6489 36 1 8.1801 0.0324 -1.2008 37 1 8.0854 -1.5115 -2.0813 38 1 5.9137 -0.3033 -2.1361 39 1 5.7747 -1.8467 -1.2598 40 1 3.9755 -2.1526 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335846550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:12 Heat of formation + Delta-G solvation = -0.672709 kcal Electronic energy + Delta-G solvation = -19061.942383 eV Core-core repulsion = 16260.695724 eV Total energy + Delta-G solvation = -2801.246658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43391 -39.65341 -36.16057 -34.57845 -33.18663 -32.58115 -31.75070 -29.42736 -27.74220 -25.42116 -24.56573 -23.92973 -23.15322 -22.04359 -20.48859 -18.45846 -17.57042 -17.28474 -16.78625 -16.28200 -15.84496 -15.57910 -15.39511 -15.11688 -14.74166 -14.57273 -14.15789 -13.96109 -13.79369 -13.41459 -13.26840 -13.11367 -12.97959 -12.80994 -12.58983 -12.54917 -12.14047 -12.02772 -11.87001 -11.61624 -11.26213 -11.03978 -10.65328 -10.61453 -10.31190 -9.61001 -8.98695 -8.20936 -6.31023 0.19310 0.39652 1.40635 1.42144 1.53955 2.40115 2.83941 3.11301 3.30201 3.42679 3.72780 3.77254 3.97101 4.01171 4.11452 4.22624 4.33951 4.40959 4.48175 4.57336 4.68745 4.77241 4.78124 4.82661 4.83711 4.92582 4.94053 5.01894 5.14854 5.17129 5.20495 5.23258 5.27361 5.31966 5.38395 5.55479 5.66177 5.86423 6.06189 6.37106 6.67788 6.85865 7.10247 7.38871 8.90272 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041511 B = 0.003779 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.359833 B = 7408.115433 C = 7721.012202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.099 3.901 3 C -0.168 4.168 4 C -0.074 4.074 5 C -0.129 4.129 6 C -0.035 4.035 7 C -0.094 4.094 8 C 0.053 3.947 9 N -0.544 5.544 10 C 0.208 3.792 11 C -0.523 4.523 12 H 0.063 0.937 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.067 3.933 20 C -0.096 4.096 21 C 0.095 3.905 22 N -0.513 5.513 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.062 0.938 33 H -0.040 1.040 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.015 0.985 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.038 10.039 0.984 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.039 4.039 3 C -0.187 4.187 4 C -0.100 4.100 5 C -0.131 4.131 6 C -0.054 4.054 7 C -0.132 4.132 8 C -0.075 4.075 9 N -0.269 5.269 10 C 0.081 3.919 11 C -0.561 4.561 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.062 4.062 20 C -0.134 4.134 21 C -0.061 4.061 22 N -0.223 5.223 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.181 0.819 27 H 0.173 0.827 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.080 0.920 33 H -0.022 1.022 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.585 8.797 1.029 23.332 hybrid contribution 1.990 0.755 -0.442 2.174 sum -19.596 9.552 0.587 21.808 Atomic orbital electron populations 1.20766 0.87064 1.04155 1.03739 1.21873 0.98482 0.88501 0.95000 1.22262 0.94677 0.99970 1.01825 1.21842 0.94877 0.98080 0.95167 1.20797 0.96291 0.94503 1.01467 1.20080 0.89755 1.00232 0.95311 1.21572 0.93264 1.00875 0.97484 1.22100 0.96537 0.95631 0.93231 1.61969 1.16141 1.46712 1.02082 1.19354 0.82980 0.93467 0.96078 1.21477 0.92993 1.27067 1.14582 0.91887 1.25926 0.96238 0.98337 0.99228 1.70088 1.01186 1.46198 1.40152 0.85383 0.77831 0.78658 0.78765 1.19734 1.20731 1.18914 1.21924 0.95676 0.95071 0.93490 1.21617 0.93526 1.00713 0.97549 1.22655 0.89127 0.98737 0.95592 1.67547 1.10196 1.30862 1.13712 0.89694 0.91269 0.88462 0.81864 0.82740 0.89767 0.91511 0.90110 0.96056 0.91983 1.02191 0.97934 0.92682 0.96634 0.92044 0.90542 0.91631 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.17 71.23 0.72 -0.61 16 2 C 0.10 2.01 6.78 42.55 0.29 2.30 16 3 C -0.17 -2.80 9.74 22.36 0.22 -2.58 16 4 C -0.07 -1.37 9.81 22.47 0.22 -1.15 16 5 C -0.13 -2.94 4.80 -19.77 -0.09 -3.04 16 6 C -0.03 -0.87 2.45 -11.43 -0.03 -0.89 16 7 C -0.09 -2.60 5.23 30.65 0.16 -2.44 16 8 C 0.05 1.91 5.46 86.32 0.47 2.38 16 9 N -0.54 -23.81 4.65 -900.91 -4.19 -28.00 16 10 C 0.21 11.31 4.72 85.56 0.40 11.71 16 11 C -0.52 -30.11 8.43 25.60 0.22 -29.90 16 12 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 15 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.07 2.57 5.30 86.32 0.46 3.03 16 20 C -0.10 -2.82 5.23 30.67 0.16 -2.66 16 21 C 0.10 2.45 9.86 84.67 0.83 3.28 16 22 N -0.51 -13.38 10.27 -183.89 -1.89 -15.27 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 0.79 8.08 -2.38 -0.02 0.77 16 26 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 27 H 0.15 2.09 8.01 -2.91 -0.02 2.07 16 28 H 0.08 1.96 7.94 -2.39 -0.02 1.94 16 29 H 0.07 1.92 7.36 -2.39 -0.02 1.90 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 2.28 8.02 -2.39 -0.02 2.26 16 33 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 34 H 0.00 0.15 7.99 -2.39 -0.02 0.13 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.06 2.63 6.70 -2.39 -0.02 2.62 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.00 7.32 -2.38 -0.02 1.98 16 40 H 0.15 3.87 7.08 -2.91 -0.02 3.85 16 Total: -1.00 -67.81 321.44 1.73 -66.08 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.00 Total: 7.24 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.49 Total: -20.08 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -5.79 Total: -100.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.81 1.73 -66.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.411 kcal (2) G-P(sol) polarization free energy of solvation -67.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds