Wall clock time and date at job start Mon Mar 30 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47220 * 269.99878 * 3 2 1 5 5 H 1.48494 * 109.46921 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.46845 * 149.99577 * 3 2 1 7 7 C 1.37875 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00610 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47529 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47528 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00135 * 183.15601 * 12 11 10 14 14 H 1.08994 * 109.47501 * 327.26394 * 13 12 11 15 15 C 1.50700 * 109.47516 * 207.26091 * 13 12 11 16 16 C 1.38668 * 120.42126 * 139.97816 * 15 13 12 17 17 C 1.38626 * 118.42181 * 180.02562 * 16 15 13 18 18 C 1.38224 * 119.16473 * 0.02562 * 17 16 15 19 19 N 1.31866 * 120.75893 * 359.97438 * 18 17 16 20 20 C 1.31875 * 121.72527 * 0.02562 * 19 18 17 21 21 C 1.53006 * 109.46755 * 87.26390 * 13 12 11 22 22 C 1.52999 * 117.49681 * 252.44774 * 21 13 12 23 23 C 1.52998 * 117.49707 * 183.79203 * 21 13 12 24 24 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47250 * 60.00111 * 9 7 2 26 26 H 1.09000 * 109.47177 * 299.99723 * 9 7 2 27 27 H 1.09006 * 109.47348 * 59.99536 * 10 9 7 28 28 H 1.09001 * 109.47476 * 300.00055 * 10 9 7 29 29 H 1.09005 * 109.46516 * 59.99934 * 11 10 9 30 30 H 1.09001 * 109.47042 * 300.00635 * 11 10 9 31 31 H 1.00901 * 111.00487 * 307.11950 * 12 11 10 32 32 H 1.07997 * 120.78822 * 0.02562 * 16 15 13 33 33 H 1.08000 * 120.42095 * 180.02562 * 17 16 15 34 34 H 1.07998 * 119.62529 * 180.02562 * 18 17 16 35 35 H 1.08006 * 119.61611 * 179.97438 * 20 19 18 36 36 H 1.08993 * 115.55321 * 38.11917 * 21 13 12 37 37 H 1.09005 * 117.49838 * 0.02562 * 22 21 13 38 38 H 1.09003 * 117.49910 * 145.01753 * 22 21 13 39 39 H 1.09000 * 117.50191 * 214.98061 * 23 21 13 40 40 H 1.09005 * 117.49864 * 359.97069 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 0.0004 13 6 7.5076 -4.0616 0.0758 14 1 7.9218 -3.1976 -0.4436 15 6 8.0098 -5.3258 -0.5726 16 6 9.1502 -5.3053 -1.3612 17 6 9.5750 -6.4921 -1.9381 18 6 8.8525 -7.6483 -1.7102 19 7 7.7722 -7.6304 -0.9543 20 6 7.3391 -6.5201 -0.3897 21 6 7.9437 -4.0325 1.5421 22 6 8.5743 -2.7407 2.0661 23 6 9.4450 -3.9775 1.8316 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1507 0.8896 29 1 5.9148 -2.1230 0.8899 30 1 5.9148 -2.1228 -0.8900 31 1 5.6257 -4.5519 0.7517 32 1 9.6946 -4.3865 -1.5221 33 1 10.4593 -6.5132 -2.5578 34 1 9.1770 -8.5771 -2.1556 35 1 6.4498 -6.5444 0.2227 36 1 7.3191 -4.6026 2.2298 37 1 8.6780 -1.9114 1.3663 38 1 8.3647 -2.4611 3.0986 39 1 9.8082 -4.5112 2.7099 40 1 10.1221 -3.9626 0.9775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347328590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:31 Heat of formation + Delta-G solvation = 46.795376 kcal Electronic energy + Delta-G solvation = -18697.794105 eV Core-core repulsion = 15898.605817 eV Total energy + Delta-G solvation = -2799.188288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46086 -38.30561 -35.67017 -33.66833 -32.63427 -31.89749 -30.64170 -27.38316 -25.16165 -23.72379 -22.78211 -22.47227 -21.99510 -20.71285 -19.91954 -17.27422 -16.73248 -16.45875 -16.06685 -15.54733 -15.22168 -14.36877 -14.33134 -14.02965 -13.81740 -13.55334 -13.18464 -12.85240 -12.62291 -12.25822 -12.00911 -11.73649 -11.67478 -11.53712 -10.96101 -10.84064 -10.70229 -10.39664 -9.96239 -9.90831 -9.73152 -9.61157 -9.46954 -9.16702 -9.01157 -8.52523 -8.31237 -6.02712 -4.00473 1.04097 1.18738 3.30996 3.38146 3.41345 3.52596 3.73025 4.09474 4.38311 4.46074 4.52325 4.65236 4.71095 4.80534 4.85833 4.89810 5.05821 5.17089 5.31175 5.32761 5.42603 5.47964 5.66023 5.66849 5.69412 5.76923 5.89044 5.91041 5.98103 6.15799 6.18275 6.52996 6.56402 6.61549 6.91342 7.13661 7.33799 7.41932 7.49664 7.81507 7.91564 8.56422 9.02967 9.59840 11.10923 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.003866 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.973920 B = 7240.339593 C = 7832.068062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.058 3.942 12 N -0.679 5.679 13 C 0.159 3.841 14 H 0.086 0.914 15 C -0.105 4.105 16 C -0.075 4.075 17 C -0.174 4.174 18 C 0.087 3.913 19 N -0.486 5.486 20 C 0.121 3.879 21 C -0.179 4.179 22 C -0.173 4.173 23 C -0.173 4.173 24 H 0.262 0.738 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.342 0.658 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.810 -10.308 0.638 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.070 4.070 12 N -0.308 5.308 13 C 0.048 3.952 14 H 0.104 0.896 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.194 4.194 18 C -0.069 4.069 19 N -0.194 5.194 20 C -0.036 4.036 21 C -0.199 4.199 22 C -0.210 4.210 23 C -0.211 4.211 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.146 -11.020 0.078 24.736 hybrid contribution 0.975 2.012 0.755 2.360 sum 23.120 -9.009 0.833 24.827 Atomic orbital electron populations 1.69922 1.06299 1.26822 1.51330 1.25046 0.94733 0.99167 0.94659 0.86766 0.80298 0.83658 0.78469 1.20314 1.21441 1.19099 1.21157 0.89536 0.94461 1.50532 0.91020 1.19530 0.97153 0.92225 0.96077 1.21461 0.91028 0.99770 1.01615 1.22185 0.97581 0.87239 1.00013 1.60682 1.03441 1.14831 1.51893 1.19978 0.89455 0.94471 0.91309 0.89559 1.20745 0.95538 0.96529 0.97971 1.21411 0.95352 0.98436 0.94961 1.22056 1.01732 0.93831 1.01792 1.22716 0.91192 0.98007 0.95027 1.67712 1.13406 1.30097 1.08210 1.22536 0.98002 0.87079 0.95972 1.23143 0.96657 1.02338 0.97743 1.23032 1.03902 0.91659 1.02431 1.22873 0.93053 1.01990 1.03176 0.92781 0.96848 0.97096 0.91946 0.92953 0.95183 0.91561 0.83944 0.85333 0.85097 0.83154 0.82923 0.87496 0.88655 0.88657 0.88945 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.40 16 10 C -0.10 -1.96 5.38 -26.73 -0.14 -2.11 16 11 C 0.06 0.90 5.47 -3.83 -0.02 0.88 16 12 N -0.68 -8.89 5.70 -107.96 -0.62 -9.51 16 13 C 0.16 1.75 2.41 -68.86 -0.17 1.58 16 14 H 0.09 0.96 7.49 -51.93 -0.39 0.58 16 15 C -0.11 -1.16 4.71 -104.48 -0.49 -1.65 16 16 C -0.08 -0.72 9.67 -39.28 -0.38 -1.10 16 17 C -0.17 -1.54 10.11 -39.44 -0.40 -1.94 16 18 C 0.09 0.89 11.18 -17.54 -0.20 0.69 16 19 N -0.49 -6.13 10.36 -13.25 -0.14 -6.27 16 20 C 0.12 1.47 10.49 -17.55 -0.18 1.28 16 21 C -0.18 -1.76 5.06 -90.62 -0.46 -2.22 16 22 C -0.17 -1.63 10.18 -26.70 -0.27 -1.90 16 23 C -0.17 -1.49 9.97 -26.70 -0.27 -1.76 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.45 8.05 -51.93 -0.42 0.04 16 30 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 31 H 0.34 4.19 7.76 -39.29 -0.31 3.88 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 1.73 7.34 -52.48 -0.39 1.35 16 36 H 0.11 1.06 7.95 -51.93 -0.41 0.64 16 37 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.75 7.99 -51.93 -0.42 0.34 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -31.81 332.66 -9.64 -41.44 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.48 Total: 1.69 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.52 Total: -22.11 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.02 Total: -43.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.81 -9.64 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347328590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.239 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds