Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47220 * 269.99878 * 3 2 1 5 5 H 1.48494 * 109.46921 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.46845 * 149.99577 * 3 2 1 7 7 C 1.37875 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00610 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47529 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47528 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00135 * 183.15601 * 12 11 10 14 14 H 1.08994 * 109.47501 * 327.26394 * 13 12 11 15 15 C 1.50700 * 109.47516 * 207.26091 * 13 12 11 16 16 C 1.38668 * 120.42126 * 139.97816 * 15 13 12 17 17 C 1.38626 * 118.42181 * 180.02562 * 16 15 13 18 18 C 1.38224 * 119.16473 * 0.02562 * 17 16 15 19 19 N 1.31866 * 120.75893 * 359.97438 * 18 17 16 20 20 C 1.31875 * 121.72527 * 0.02562 * 19 18 17 21 21 C 1.53006 * 109.46755 * 87.26390 * 13 12 11 22 22 C 1.52999 * 117.49681 * 252.44774 * 21 13 12 23 23 C 1.52998 * 117.49707 * 183.79203 * 21 13 12 24 24 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47250 * 60.00111 * 9 7 2 26 26 H 1.09000 * 109.47177 * 299.99723 * 9 7 2 27 27 H 1.09006 * 109.47348 * 59.99536 * 10 9 7 28 28 H 1.09001 * 109.47476 * 300.00055 * 10 9 7 29 29 H 1.09005 * 109.46516 * 59.99934 * 11 10 9 30 30 H 1.09001 * 109.47042 * 300.00635 * 11 10 9 31 31 H 1.00901 * 111.00487 * 307.11950 * 12 11 10 32 32 H 1.07997 * 120.78822 * 0.02562 * 16 15 13 33 33 H 1.08000 * 120.42095 * 180.02562 * 17 16 15 34 34 H 1.07998 * 119.62529 * 180.02562 * 18 17 16 35 35 H 1.08006 * 119.61611 * 179.97438 * 20 19 18 36 36 H 1.08993 * 115.55321 * 38.11917 * 21 13 12 37 37 H 1.09005 * 117.49838 * 0.02562 * 22 21 13 38 38 H 1.09003 * 117.49910 * 145.01753 * 22 21 13 39 39 H 1.09000 * 117.50191 * 214.98061 * 23 21 13 40 40 H 1.09005 * 117.49864 * 359.97069 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 0.0004 13 6 7.5076 -4.0616 0.0758 14 1 7.9218 -3.1976 -0.4436 15 6 8.0098 -5.3258 -0.5726 16 6 9.1502 -5.3053 -1.3612 17 6 9.5750 -6.4921 -1.9381 18 6 8.8525 -7.6483 -1.7102 19 7 7.7722 -7.6304 -0.9543 20 6 7.3391 -6.5201 -0.3897 21 6 7.9437 -4.0325 1.5421 22 6 8.5743 -2.7407 2.0661 23 6 9.4450 -3.9775 1.8316 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1507 0.8896 29 1 5.9148 -2.1230 0.8899 30 1 5.9148 -2.1228 -0.8900 31 1 5.6257 -4.5519 0.7517 32 1 9.6946 -4.3865 -1.5221 33 1 10.4593 -6.5132 -2.5578 34 1 9.1770 -8.5771 -2.1556 35 1 6.4498 -6.5444 0.2227 36 1 7.3191 -4.6026 2.2298 37 1 8.6780 -1.9114 1.3663 38 1 8.3647 -2.4611 3.0986 39 1 9.8082 -4.5112 2.7099 40 1 10.1221 -3.9626 0.9775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347328590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 27.279881 kcal Electronic energy + Delta-G solvation = -18698.640361 eV Core-core repulsion = 15898.605817 eV Total energy + Delta-G solvation = -2800.034543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24903 -39.14363 -36.90301 -35.25984 -33.90273 -33.08280 -31.89427 -28.84047 -26.43868 -24.61331 -23.64649 -23.43632 -23.11519 -21.99720 -21.14521 -18.91370 -17.99077 -17.32137 -16.95136 -16.49623 -16.32886 -16.10159 -15.53335 -15.00636 -14.88152 -14.63287 -14.41378 -13.97271 -13.87503 -13.74188 -13.28138 -12.90696 -12.77519 -12.52546 -12.43435 -12.29610 -11.78767 -11.66327 -11.51617 -11.37246 -11.29325 -11.00682 -10.75778 -10.65896 -10.28818 -9.81248 -9.33387 -8.28735 -6.33195 0.27359 0.43194 1.36534 1.38624 1.50727 2.37134 2.80084 2.93992 3.06615 3.15635 3.62570 3.75706 3.90464 4.01316 4.05791 4.14088 4.15376 4.23420 4.33053 4.35356 4.44931 4.62106 4.69698 4.75381 4.76727 4.93340 4.94346 4.99321 5.00300 5.13158 5.17056 5.22743 5.25655 5.41638 5.53513 5.62806 5.67427 5.85353 6.09027 6.30292 6.42479 6.75475 7.12974 7.31434 8.88460 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.003866 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.973920 B = 7240.339593 C = 7832.068062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.093 4.093 11 C 0.075 3.925 12 N -0.686 5.686 13 C 0.167 3.833 14 H 0.090 0.910 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.167 4.167 18 C 0.075 3.925 19 N -0.517 5.517 20 C 0.100 3.900 21 C -0.188 4.188 22 C -0.176 4.176 23 C -0.161 4.161 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.345 0.655 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.215 -9.332 0.291 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.131 4.131 11 C -0.054 4.054 12 N -0.316 5.316 13 C 0.056 3.944 14 H 0.108 0.892 15 C -0.115 4.115 16 C -0.105 4.105 17 C -0.186 4.186 18 C -0.082 4.082 19 N -0.226 5.226 20 C -0.057 4.057 21 C -0.208 4.208 22 C -0.213 4.213 23 C -0.199 4.199 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.164 0.836 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.570 -10.068 -0.263 27.482 hybrid contribution -0.122 1.571 0.835 1.783 sum 25.449 -8.498 0.572 26.836 Atomic orbital electron populations 1.70088 1.08448 1.28179 1.52810 1.26101 0.95668 1.03792 0.94092 0.85583 0.79532 0.77829 0.79237 1.19143 1.21039 1.16629 1.21543 0.92420 0.92984 1.50285 0.95414 1.19474 0.93617 0.95035 0.96534 1.21283 0.94219 0.96935 1.00631 1.21876 0.94219 0.88787 1.00529 1.60596 1.05225 1.13338 1.52420 1.19917 0.87700 0.94646 0.92127 0.89243 1.20754 0.96249 0.95898 0.98580 1.21746 0.94867 0.99754 0.94179 1.22411 1.02180 0.92894 1.01108 1.23213 0.90676 0.99708 0.94598 1.67676 1.14873 1.30649 1.09403 1.22546 0.98508 0.87749 0.96848 1.23046 0.97758 1.03074 0.96922 1.23083 1.04008 0.91679 1.02527 1.22925 0.92195 1.01103 1.03630 0.92527 0.96020 0.96283 0.93566 0.93466 0.94337 0.91266 0.83609 0.83060 0.81848 0.80913 0.83576 0.87970 0.88461 0.88546 0.88368 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 3 Si 0.96 44.45 27.47 68.60 1.88 46.33 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.53 -31.51 9.66 25.60 0.25 -31.27 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.60 5.38 30.59 0.16 -3.44 16 11 C 0.07 2.20 5.47 86.30 0.47 2.67 16 12 N -0.69 -17.36 5.70 -495.46 -2.82 -20.18 16 13 C 0.17 3.38 2.41 44.17 0.11 3.49 16 14 H 0.09 1.77 7.49 -2.39 -0.02 1.75 16 15 C -0.11 -2.31 4.71 -19.77 -0.09 -2.40 16 16 C -0.08 -1.30 9.67 22.47 0.22 -1.09 16 17 C -0.17 -2.45 10.11 22.36 0.23 -2.23 16 18 C 0.07 1.38 11.18 84.68 0.95 2.33 16 19 N -0.52 -12.80 10.36 -195.84 -2.03 -14.83 16 20 C 0.10 2.40 10.49 84.67 0.89 3.29 16 21 C -0.19 -3.39 5.06 -10.79 -0.05 -3.45 16 22 C -0.18 -2.91 10.18 30.62 0.31 -2.60 16 23 C -0.16 -2.38 9.97 30.62 0.31 -2.08 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 25 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 26 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 27 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.08 8.05 -2.38 -0.02 1.06 16 30 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 31 H 0.34 8.39 7.76 -89.69 -0.70 7.69 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.15 3.45 7.34 -2.91 -0.02 3.43 16 36 H 0.10 1.93 7.95 -2.39 -0.02 1.92 16 37 H 0.10 1.58 8.07 -2.38 -0.02 1.56 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.33 7.99 -2.38 -0.02 1.31 16 Total: -1.00 -69.98 332.66 1.91 -68.07 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.26 Total: 17.95 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 4.32 Total: -36.60 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.55 Total: -95.75 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -69.98 1.91 -68.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347328590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.349 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds