Wall clock time and date at job start Mon Mar 30 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48506 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47079 * 299.99805 * 3 2 1 6 6 H 1.48503 * 109.47187 * 60.00095 * 3 2 1 7 7 C 1.37878 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.46904 * 110.99900 * 184.47714 * 12 11 10 14 14 H 1.09002 * 109.46965 * 321.90717 * 13 12 11 15 15 C 1.50697 * 109.47266 * 81.90632 * 13 12 11 16 16 C 1.38670 * 120.41852 * 220.25880 * 15 13 12 17 17 C 1.38632 * 118.41655 * 180.21881 * 16 15 13 18 18 C 1.38218 * 119.16602 * 359.48424 * 17 16 15 19 19 N 1.31862 * 120.76168 * 0.29587 * 18 17 16 20 20 C 1.31887 * 121.72468 * 359.97438 * 19 18 17 21 21 C 1.52997 * 109.46850 * 201.91032 * 13 12 11 22 22 C 1.53008 * 117.49707 * 134.17944 * 21 13 12 23 23 C 1.52999 * 117.50498 * 65.51727 * 21 13 12 24 24 H 0.97009 * 119.99508 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46675 * 59.99826 * 9 7 2 26 26 H 1.09001 * 109.46854 * 300.00459 * 9 7 2 27 27 H 1.09000 * 109.46675 * 60.00763 * 10 9 7 28 28 H 1.08991 * 109.47442 * 300.00551 * 10 9 7 29 29 H 1.08992 * 109.46999 * 60.00057 * 11 10 9 30 30 H 1.09002 * 109.47305 * 300.00051 * 11 10 9 31 31 H 1.00904 * 110.99723 * 308.42596 * 12 11 10 32 32 H 1.07997 * 120.78967 * 359.97438 * 16 15 13 33 33 H 1.08006 * 120.41604 * 179.75578 * 17 16 15 34 34 H 1.07994 * 119.62275 * 180.27290 * 18 17 16 35 35 H 1.07999 * 119.61656 * 180.02562 * 20 19 18 36 36 H 1.09002 * 115.54891 * 279.83741 * 21 13 12 37 37 H 1.08996 * 117.50039 * 359.97438 * 22 21 13 38 38 H 1.08995 * 117.49454 * 145.01904 * 22 21 13 39 39 H 1.08997 * 117.50021 * 214.98440 * 23 21 13 40 40 H 1.09009 * 117.49351 * 359.97091 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4346 -6.1037 0.0018 13 6 1.7375 -7.3924 -0.1046 14 1 0.8171 -7.3567 0.4783 15 6 1.4069 -7.6669 -1.5490 16 6 0.1860 -8.2253 -1.8960 17 6 -0.0729 -8.4646 -3.2368 18 6 0.8833 -8.1310 -4.1774 19 7 2.0320 -7.5970 -3.8113 20 6 2.3145 -7.3604 -2.5449 21 6 2.6388 -8.5057 0.4329 22 6 2.0093 -9.5284 1.3810 23 6 2.9825 -8.4787 1.9235 24 1 -0.4850 0.8402 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8893 29 1 0.8531 -5.0450 -0.8885 30 1 0.8537 -5.0446 0.8914 31 1 3.1146 -5.9984 -0.7362 32 1 -0.5443 -8.4717 -1.1394 33 1 -1.0118 -8.9020 -3.5428 34 1 0.6876 -8.3100 -5.2242 35 1 3.2659 -6.9214 -2.2833 36 1 3.4063 -8.8621 -0.2542 37 1 0.9532 -9.4078 1.6221 38 1 2.3630 -10.5574 1.3179 39 1 3.9760 -8.8176 2.2172 40 1 2.5668 -7.6674 2.5212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347328591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:34 Heat of formation + Delta-G solvation = 44.209240 kcal Electronic energy + Delta-G solvation = -18780.312473 eV Core-core repulsion = 15981.012042 eV Total energy + Delta-G solvation = -2799.300431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50863 -38.04064 -35.72631 -33.66881 -32.59065 -31.80133 -30.23983 -27.12362 -25.15560 -23.78148 -22.81071 -22.30747 -22.00319 -20.63860 -19.77637 -17.45149 -16.49230 -16.21485 -16.01742 -15.44422 -14.78990 -14.67291 -14.43363 -14.00037 -13.78692 -13.52343 -13.17150 -12.78332 -12.24343 -12.09522 -11.89492 -11.55795 -11.51199 -11.24264 -10.86301 -10.58094 -10.52902 -10.41787 -10.19903 -9.88179 -9.72165 -9.53296 -9.34067 -9.07877 -8.99149 -8.33226 -8.26990 -5.97996 -3.99892 0.98556 1.17686 3.32846 3.40120 3.44797 3.63907 3.72614 4.25217 4.33455 4.48985 4.61084 4.71777 4.78869 4.88357 4.94867 5.01668 5.11760 5.28476 5.37819 5.38470 5.54769 5.57511 5.63445 5.80304 5.86569 5.90789 5.95923 6.05875 6.10334 6.22189 6.30785 6.56865 6.71287 6.75658 7.13456 7.27804 7.54913 7.70149 7.84515 7.86941 8.02357 8.45642 9.07462 9.64183 11.13550 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.004221 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.116457 B = 6631.353741 C = 7509.570560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.675 5.675 13 C 0.160 3.840 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.067 4.067 17 C -0.171 4.171 18 C 0.090 3.910 19 N -0.480 5.480 20 C 0.103 3.897 21 C -0.138 4.138 22 C -0.184 4.184 23 C -0.156 4.156 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.338 0.662 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -21.055 -2.066 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.069 4.069 12 N -0.305 5.305 13 C 0.049 3.951 14 H 0.105 0.895 15 C -0.158 4.158 16 C -0.094 4.094 17 C -0.191 4.191 18 C -0.066 4.066 19 N -0.188 5.188 20 C -0.054 4.054 21 C -0.157 4.157 22 C -0.221 4.221 23 C -0.193 4.193 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.820 -20.719 -2.014 20.896 hybrid contribution -0.627 0.757 -0.410 1.065 sum 1.193 -19.961 -2.424 20.143 Atomic orbital electron populations 1.69981 1.06080 1.26420 1.51162 1.25028 0.94838 0.99274 0.95381 0.86545 0.80176 0.83808 0.77542 1.19690 1.21053 1.21016 1.21294 0.93099 0.91024 1.50173 0.92596 1.19058 0.93995 0.91395 0.97065 1.21636 0.99220 0.92963 1.00753 1.22170 0.94255 0.90641 0.99876 1.60778 1.16840 1.00425 1.52465 1.20074 0.96436 0.89481 0.89143 0.89500 1.21733 0.95408 0.99863 0.98748 1.21490 0.96070 0.95384 0.96454 1.22141 1.01032 1.01982 0.93966 1.22763 0.89220 0.94558 1.00107 1.67691 1.20337 1.11514 1.19296 1.22546 0.99066 0.96079 0.87753 1.22106 1.01775 0.98282 0.93488 1.23003 0.99062 0.95306 1.04737 1.22808 0.99740 1.00888 0.95862 0.93119 0.96901 0.96584 0.92424 0.93650 0.95775 0.91405 0.84198 0.84973 0.84864 0.82905 0.82997 0.88240 0.89004 0.89105 0.89105 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.24 5.37 -26.73 -0.14 -2.39 16 11 C 0.06 1.01 5.49 -3.82 -0.02 0.99 16 12 N -0.68 -9.46 6.21 -107.95 -0.67 -10.13 16 13 C 0.16 1.89 2.39 -68.86 -0.16 1.72 16 14 H 0.09 1.05 7.60 -51.93 -0.39 0.65 16 15 C -0.15 -1.84 4.51 -104.48 -0.47 -2.32 16 16 C -0.07 -0.73 9.82 -39.28 -0.39 -1.11 16 17 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16 18 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 19 N -0.48 -6.56 10.36 -13.25 -0.14 -6.70 16 20 C 0.10 1.34 10.33 -17.55 -0.18 1.15 16 21 C -0.14 -1.43 5.29 -90.62 -0.48 -1.91 16 22 C -0.18 -1.65 10.18 -26.69 -0.27 -1.92 16 23 C -0.16 -1.57 10.22 -26.69 -0.27 -1.84 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.43 7.80 -51.93 -0.41 0.03 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.34 4.59 6.40 -39.29 -0.25 4.34 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.15 1.81 6.51 -52.49 -0.34 1.46 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -31.56 335.05 -10.01 -41.57 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.43 Total: 2.07 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.54 Total: -22.19 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.07 Total: -43.46 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.56 -10.01 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347328591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.779 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds