Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48506 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47079 * 299.99805 * 3 2 1 6 6 H 1.48503 * 109.47187 * 60.00095 * 3 2 1 7 7 C 1.37878 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.46904 * 110.99900 * 184.47714 * 12 11 10 14 14 H 1.09002 * 109.46965 * 321.90717 * 13 12 11 15 15 C 1.50697 * 109.47266 * 81.90632 * 13 12 11 16 16 C 1.38670 * 120.41852 * 220.25880 * 15 13 12 17 17 C 1.38632 * 118.41655 * 180.21881 * 16 15 13 18 18 C 1.38218 * 119.16602 * 359.48424 * 17 16 15 19 19 N 1.31862 * 120.76168 * 0.29587 * 18 17 16 20 20 C 1.31887 * 121.72468 * 359.97438 * 19 18 17 21 21 C 1.52997 * 109.46850 * 201.91032 * 13 12 11 22 22 C 1.53008 * 117.49707 * 134.17944 * 21 13 12 23 23 C 1.52999 * 117.50498 * 65.51727 * 21 13 12 24 24 H 0.97009 * 119.99508 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46675 * 59.99826 * 9 7 2 26 26 H 1.09001 * 109.46854 * 300.00459 * 9 7 2 27 27 H 1.09000 * 109.46675 * 60.00763 * 10 9 7 28 28 H 1.08991 * 109.47442 * 300.00551 * 10 9 7 29 29 H 1.08992 * 109.46999 * 60.00057 * 11 10 9 30 30 H 1.09002 * 109.47305 * 300.00051 * 11 10 9 31 31 H 1.00904 * 110.99723 * 308.42596 * 12 11 10 32 32 H 1.07997 * 120.78967 * 359.97438 * 16 15 13 33 33 H 1.08006 * 120.41604 * 179.75578 * 17 16 15 34 34 H 1.07994 * 119.62275 * 180.27290 * 18 17 16 35 35 H 1.07999 * 119.61656 * 180.02562 * 20 19 18 36 36 H 1.09002 * 115.54891 * 279.83741 * 21 13 12 37 37 H 1.08996 * 117.50039 * 359.97438 * 22 21 13 38 38 H 1.08995 * 117.49454 * 145.01904 * 22 21 13 39 39 H 1.08997 * 117.50021 * 214.98440 * 23 21 13 40 40 H 1.09009 * 117.49351 * 359.97091 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4346 -6.1037 0.0018 13 6 1.7375 -7.3924 -0.1046 14 1 0.8171 -7.3567 0.4783 15 6 1.4069 -7.6669 -1.5490 16 6 0.1860 -8.2253 -1.8960 17 6 -0.0729 -8.4646 -3.2368 18 6 0.8833 -8.1310 -4.1774 19 7 2.0320 -7.5970 -3.8113 20 6 2.3145 -7.3604 -2.5449 21 6 2.6388 -8.5057 0.4329 22 6 2.0093 -9.5284 1.3810 23 6 2.9825 -8.4787 1.9235 24 1 -0.4850 0.8402 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8893 29 1 0.8531 -5.0450 -0.8885 30 1 0.8537 -5.0446 0.8914 31 1 3.1146 -5.9984 -0.7362 32 1 -0.5443 -8.4717 -1.1394 33 1 -1.0118 -8.9020 -3.5428 34 1 0.6876 -8.3100 -5.2242 35 1 3.2659 -6.9214 -2.2833 36 1 3.4063 -8.8621 -0.2542 37 1 0.9532 -9.4078 1.6221 38 1 2.3630 -10.5574 1.3179 39 1 3.9760 -8.8176 2.2172 40 1 2.5668 -7.6674 2.5212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347328591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 25.574619 kcal Electronic energy + Delta-G solvation = -18781.120531 eV Core-core repulsion = 15981.012042 eV Total energy + Delta-G solvation = -2800.108489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40077 -38.96897 -37.01349 -35.40768 -33.84825 -33.07756 -31.60112 -28.62994 -26.61902 -24.83914 -24.02184 -23.27925 -23.04043 -22.10945 -20.96764 -18.52868 -18.29025 -17.32688 -16.90938 -16.59353 -16.48200 -15.92241 -15.67804 -15.07760 -14.98067 -14.54202 -14.33409 -13.99680 -13.83006 -13.49438 -13.42588 -12.89312 -12.75439 -12.51097 -12.38169 -12.25875 -12.16502 -11.60552 -11.47858 -11.22741 -11.19024 -10.86973 -10.73087 -10.57167 -10.44523 -9.94205 -9.45198 -8.21418 -6.32390 0.12043 0.31675 1.39456 1.39593 1.53397 2.40160 2.75258 2.84974 3.11944 3.36287 3.41407 3.72166 3.90138 3.96201 4.05755 4.11203 4.19721 4.26149 4.28942 4.35764 4.44036 4.58756 4.68589 4.72186 4.80681 4.87670 4.95962 5.07055 5.11544 5.15639 5.21842 5.24497 5.32644 5.40030 5.50819 5.72682 5.73906 5.84128 6.01420 6.25395 6.38368 6.84521 6.98738 7.37067 8.90827 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.004221 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.116457 B = 6631.353741 C = 7509.570560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.077 3.923 12 N -0.672 5.672 13 C 0.166 3.834 14 H 0.086 0.914 15 C -0.161 4.161 16 C -0.076 4.076 17 C -0.165 4.165 18 C 0.077 3.923 19 N -0.511 5.511 20 C 0.084 3.916 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.162 4.162 24 H 0.264 0.736 25 H -0.014 1.014 26 H -0.007 1.007 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.013 0.987 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -21.988 -2.075 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.131 4.131 11 C -0.052 4.052 12 N -0.302 5.302 13 C 0.055 3.945 14 H 0.104 0.896 15 C -0.164 4.164 16 C -0.102 4.102 17 C -0.185 4.185 18 C -0.079 4.079 19 N -0.219 5.219 20 C -0.073 4.073 21 C -0.163 4.163 22 C -0.204 4.204 23 C -0.200 4.200 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.012 0.988 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.194 0.806 35 H 0.169 0.831 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.073 -21.673 -2.021 21.866 hybrid contribution -0.754 0.993 -0.434 1.320 sum 1.320 -20.680 -2.454 20.867 Atomic orbital electron populations 1.70107 1.07824 1.27705 1.51819 1.25989 0.95779 1.03401 0.94678 0.85392 0.79093 0.78692 0.77839 1.18588 1.20370 1.20184 1.21727 0.93547 0.92390 1.50378 0.92243 1.18953 0.94382 0.93170 0.94608 1.21385 0.98044 0.92958 1.00738 1.21813 0.94040 0.90125 0.99271 1.60723 1.16247 1.00509 1.52746 1.20053 0.96516 0.88545 0.89392 0.89567 1.21724 0.95969 1.00433 0.98321 1.21844 0.95914 0.94886 0.97564 1.22500 1.01836 1.00809 0.93345 1.23276 0.88839 0.94085 1.01731 1.67668 1.21852 1.12719 1.19698 1.22621 0.99603 0.97021 0.88080 1.22031 1.02083 0.98573 0.93633 1.23082 0.99197 0.95558 1.02597 1.22817 1.00616 1.01226 0.95292 0.92768 0.99546 0.98838 0.92411 0.93491 0.96832 0.91607 0.83838 0.82902 0.81653 0.80566 0.83070 0.88202 0.88394 0.87613 0.88243 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.94 5.37 30.59 0.16 -3.78 16 11 C 0.08 2.66 5.49 86.30 0.47 3.13 16 12 N -0.67 -18.64 6.21 -495.45 -3.08 -21.72 16 13 C 0.17 3.77 2.39 44.17 0.11 3.88 16 14 H 0.09 1.98 7.60 -2.39 -0.02 1.96 16 15 C -0.16 -3.73 4.51 -19.77 -0.09 -3.82 16 16 C -0.08 -1.50 9.82 22.47 0.22 -1.28 16 17 C -0.17 -2.96 10.11 22.36 0.23 -2.73 16 18 C 0.08 1.64 11.18 84.68 0.95 2.59 16 19 N -0.51 -13.81 10.36 -195.85 -2.03 -15.84 16 20 C 0.08 2.16 10.33 84.67 0.87 3.04 16 21 C -0.14 -2.81 5.29 -10.79 -0.06 -2.87 16 22 C -0.17 -2.64 10.18 30.62 0.31 -2.32 16 23 C -0.16 -3.05 10.22 30.62 0.31 -2.74 16 24 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 25 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.01 0.49 7.80 -2.39 -0.02 0.48 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.34 9.23 6.40 -89.69 -0.57 8.66 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.15 3.69 6.51 -2.91 -0.02 3.67 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -68.16 335.05 1.97 -66.19 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.43 Total: 18.20 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.33 Total: -36.38 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -4.82 Total: -95.11 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.16 1.97 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347328591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.766 kcal (2) G-P(sol) polarization free energy of solvation -68.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds