Wall clock time and date at job start Mon Mar 30 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00158 * 2 1 4 4 H 1.48496 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47073 * 300.00062 * 3 2 1 6 6 H 1.48499 * 109.47027 * 59.99812 * 3 2 1 7 7 C 1.37871 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00643 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47516 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47426 * 180.02562 * 10 9 7 12 12 C 1.47440 * 110.99676 * 290.12754 * 11 10 9 13 13 C 1.54317 * 107.23368 * 236.73977 * 12 11 10 14 14 C 1.55144 * 103.01861 * 337.71644 * 13 12 11 15 15 H 1.09000 * 110.99290 * 277.56635 * 14 13 12 16 16 C 1.52996 * 110.99254 * 153.74565 * 14 13 12 17 17 C 1.50702 * 109.47457 * 66.45552 * 16 14 13 18 18 C 1.38650 * 120.78563 * 269.71912 * 17 16 14 19 19 C 1.38202 * 119.15940 * 179.75128 * 18 17 16 20 20 N 1.31872 * 120.76319 * 0.53463 * 19 18 17 21 21 C 1.31867 * 121.72897 * 359.74055 * 20 19 18 22 22 C 1.38212 * 120.76078 * 359.97438 * 21 20 19 23 23 C 1.47842 * 111.00238 * 169.28143 * 11 10 9 24 24 H 0.97004 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47188 * 59.99506 * 9 7 2 26 26 H 1.09006 * 109.46826 * 300.00310 * 9 7 2 27 27 H 1.08998 * 109.47219 * 60.00017 * 10 9 7 28 28 H 1.09006 * 109.47359 * 300.00024 * 10 9 7 29 29 H 1.09000 * 109.89463 * 117.33566 * 12 11 10 30 30 H 1.09000 * 109.88994 * 356.14383 * 12 11 10 31 31 H 1.08999 * 110.70846 * 96.09223 * 13 12 11 32 32 H 1.09000 * 110.71111 * 219.33808 * 13 12 11 33 33 H 1.09009 * 109.47248 * 186.45620 * 16 14 13 34 34 H 1.09001 * 109.47091 * 306.44802 * 16 14 13 35 35 H 1.08001 * 120.42214 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.61919 * 180.29442 * 19 18 17 37 37 H 1.07993 * 119.62564 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.41691 * 180.02562 * 22 21 20 39 39 H 1.09004 * 110.37187 * 265.19138 * 23 11 10 40 40 H 1.08998 * 110.37031 * 27.53480 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 0.8359 -5.1554 1.2921 13 6 1.3378 -6.5059 1.8447 14 6 1.8347 -7.2413 0.5723 15 1 1.0059 -7.7157 0.0467 16 6 2.9186 -8.2641 0.9184 17 6 2.3196 -9.3692 1.7497 18 6 2.2991 -9.2848 3.1335 19 6 1.7367 -10.3153 3.8627 20 7 1.2336 -11.3735 3.2576 21 6 1.2409 -11.4901 1.9441 22 6 1.7812 -10.4969 1.1492 23 6 2.4203 -6.0711 -0.2568 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 -0.2435 -5.1930 1.1452 30 1 1.0902 -4.3535 1.9852 31 1 2.1575 -6.3543 2.5470 32 1 0.5230 -7.0568 2.3147 33 1 3.3299 -8.6827 -0.0003 34 1 3.7130 -7.7750 1.4822 35 1 2.7133 -8.4226 3.6350 36 1 1.7124 -10.2551 4.9407 37 1 0.8199 -12.3719 1.4841 38 1 1.7839 -10.5980 0.0740 39 1 2.4240 -6.3221 -1.3175 40 1 3.4289 -5.8339 0.0815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364707596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:48 Heat of formation + Delta-G solvation = 20.595867 kcal Electronic energy + Delta-G solvation = -18703.595932 eV Core-core repulsion = 15903.271548 eV Total energy + Delta-G solvation = -2800.324384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45680 -38.78764 -35.04461 -33.26145 -31.67205 -31.39750 -29.47367 -28.76506 -26.17079 -24.15854 -23.66555 -22.24890 -21.53488 -20.32455 -19.39835 -16.93416 -16.50683 -16.38921 -15.89754 -15.65417 -14.97815 -14.48700 -14.05054 -13.95881 -13.62802 -13.36675 -13.21016 -12.83984 -12.52272 -12.46546 -11.96506 -11.74841 -11.23681 -11.07254 -11.00208 -10.89388 -10.77329 -10.50935 -10.44204 -9.85548 -9.69302 -9.65637 -9.36114 -9.34913 -9.09890 -8.34374 -7.70824 -5.99300 -4.01903 0.92854 1.05056 3.30757 3.38128 3.41933 3.60139 4.24723 4.32852 4.37921 4.48450 4.56043 4.78818 4.88787 4.93600 4.94129 5.07309 5.29904 5.36559 5.41242 5.46835 5.50588 5.57231 5.67612 5.75709 5.86144 5.94119 5.98579 6.09849 6.21490 6.24160 6.32351 6.45093 6.50534 6.52679 6.98044 7.50889 7.52940 7.76627 7.78646 7.90233 8.09845 8.43880 9.05861 9.61806 11.12094 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.051283 B = 0.003169 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.858972 B = 8834.464303 C = 8954.229192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.059 3.941 11 N -0.530 5.530 12 C 0.045 3.955 13 C -0.135 4.135 14 C -0.091 4.091 15 H 0.084 0.916 16 C -0.075 4.075 17 C -0.028 4.028 18 C -0.168 4.168 19 C 0.098 3.902 20 N -0.493 5.493 21 C 0.097 3.903 22 C -0.172 4.172 23 C 0.047 3.953 24 H 0.260 0.740 25 H 0.024 0.976 26 H 0.016 0.984 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -20.763 4.020 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.068 4.068 11 N -0.254 5.254 12 C -0.083 4.083 13 C -0.173 4.173 14 C -0.110 4.110 15 H 0.102 0.898 16 C -0.113 4.113 17 C -0.036 4.036 18 C -0.188 4.188 19 C -0.059 4.059 20 N -0.203 5.203 21 C -0.059 4.059 22 C -0.192 4.192 23 C -0.081 4.081 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.981 -21.259 4.124 22.018 hybrid contribution 1.372 1.680 0.136 2.173 sum 5.353 -19.579 4.260 20.740 Atomic orbital electron populations 1.69990 1.06019 1.26437 1.50737 1.25001 0.94833 0.99186 0.95345 0.86547 0.80066 0.83852 0.77591 1.19792 1.20964 1.21042 1.21238 0.92979 0.91109 1.50746 0.92801 1.19072 0.93939 0.90062 0.97810 1.22504 0.96665 0.88862 0.98788 1.63651 1.28696 1.02383 1.30705 1.22779 0.99724 0.95438 0.90349 1.22879 1.00642 0.96816 0.96979 1.22282 0.97379 0.94615 0.96709 0.89804 1.20655 0.97695 0.93747 0.99178 1.20340 0.94500 0.94699 0.94090 1.22099 1.01892 1.00568 0.94265 1.22752 0.93544 0.89124 1.00464 1.67665 1.16370 1.24555 1.11681 1.22740 0.95657 0.98199 0.89352 1.22076 1.00700 0.94897 1.01528 1.23055 0.95001 0.90251 0.99760 0.93059 0.95785 0.96593 0.96138 0.92278 0.91025 0.92133 0.91777 0.91395 0.90247 0.90413 0.84861 0.82909 0.82940 0.84834 0.90742 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.75 5.00 -27.89 -0.14 0.61 16 10 C 0.06 1.25 4.47 -3.83 -0.02 1.23 16 11 N -0.53 -9.66 5.16 -231.25 -1.19 -10.85 16 12 C 0.05 0.75 6.21 -2.84 -0.02 0.73 16 13 C -0.13 -1.70 5.45 -24.91 -0.14 -1.83 16 14 C -0.09 -1.04 3.06 -88.48 -0.27 -1.31 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.08 -0.69 4.92 -27.88 -0.14 -0.82 16 17 C -0.03 -0.27 4.91 -104.32 -0.51 -0.78 16 18 C -0.17 -1.56 9.18 -39.44 -0.36 -1.92 16 19 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 20 N -0.49 -5.45 10.36 -13.25 -0.14 -5.59 16 21 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 22 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 23 C 0.05 0.67 6.15 -2.30 -0.01 0.65 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.44 7.15 -51.93 -0.37 0.07 16 27 H 0.02 0.43 7.96 -51.93 -0.41 0.02 16 28 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.10 6.91 -51.93 -0.36 0.74 16 31 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.63 8.10 -51.92 -0.42 0.21 16 34 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -31.75 326.74 -10.05 -41.81 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.56 Total: -3.12 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.80 Total: -17.53 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.59 Total: -42.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.75 -10.05 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364707596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.402 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds