Wall clock time and date at job start Mon Mar 30 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38299 * 119.92631 * 2 1 4 4 C 1.38099 * 120.07354 * 180.28055 * 3 2 1 5 5 C 1.38905 * 119.92673 * 359.43771 * 4 3 2 6 6 N 1.39672 * 120.07414 * 180.25867 * 5 4 3 7 7 C 1.46203 * 111.00281 * 125.27133 * 6 5 4 8 8 C 1.51215 * 109.09778 * 144.76512 * 7 6 5 9 9 C 1.53795 * 109.63350 * 92.42493 * 8 7 6 10 10 N 1.47609 * 111.30176 * 319.93713 * 9 8 7 11 11 C 1.36939 * 118.75238 * 138.31558 * 10 9 8 12 12 H 1.07998 * 120.00253 * 208.98966 * 11 10 9 13 13 C 1.38821 * 119.99676 * 28.98094 * 11 10 9 14 14 N 1.31621 * 119.99850 * 12.84975 * 13 11 10 15 15 Si 1.86799 * 119.99752 * 192.84203 * 13 11 10 16 16 H 1.48494 * 109.47472 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46603 * 120.00451 * 15 13 11 18 18 H 1.48500 * 109.47070 * 240.00048 * 15 13 11 19 19 C 1.44883 * 122.50573 * 318.33197 * 10 9 8 20 20 C 1.41441 * 111.00143 * 354.23541 * 6 5 4 21 21 C 1.38913 * 119.85420 * 0.28350 * 5 4 3 22 22 C 1.38111 * 119.92093 * 359.97438 * 21 5 4 23 23 H 1.09008 * 109.47191 * 270.27856 * 1 2 3 24 24 H 1.08998 * 109.47497 * 30.28197 * 1 2 3 25 25 H 1.09004 * 109.47478 * 150.28147 * 1 2 3 26 26 H 1.08002 * 119.95730 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.03473 * 179.71765 * 4 3 2 28 28 H 1.08993 * 109.53291 * 264.65998 * 7 6 5 29 29 H 1.09005 * 109.52866 * 24.88289 * 7 6 5 30 30 H 1.08995 * 109.46527 * 332.36152 * 8 7 6 31 31 H 1.09004 * 109.39529 * 212.44575 * 8 7 6 32 32 H 1.08995 * 109.11480 * 199.46036 * 9 8 7 33 33 H 1.09011 * 109.06220 * 80.36688 * 9 8 7 34 34 H 0.97000 * 120.00068 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.43926 * 329.64658 * 19 10 9 36 36 H 1.08998 * 109.40442 * 209.75035 * 19 10 9 37 37 H 1.08996 * 109.38725 * 311.84052 * 20 6 5 38 38 H 1.09004 * 109.38747 * 71.52663 * 20 6 5 39 39 H 1.07991 * 120.04192 * 180.02562 * 21 5 4 40 40 H 1.07998 * 119.96046 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 -0.0059 5 6 4.2739 0.0001 0.0001 6 7 5.6707 0.0002 -0.0004 7 6 6.1950 -0.7823 1.1178 8 6 7.4618 -1.4827 0.6805 9 6 8.6798 -0.6068 1.0190 10 7 8.4067 0.8186 0.7498 11 6 8.8405 1.7541 1.6508 12 1 8.3037 2.6844 1.7641 13 6 9.9701 1.5065 2.4189 14 7 10.7661 0.5035 2.1142 15 14 10.3603 2.5970 3.8845 16 1 9.3169 3.6457 4.0130 17 1 10.3890 1.7737 5.1201 18 1 11.6851 3.2378 3.6857 19 6 7.6969 1.2657 -0.4315 20 6 6.1775 1.3133 -0.1399 21 6 3.5779 -1.2020 0.0059 22 6 2.1968 -1.1984 0.0063 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6550 2.1328 -0.0004 27 1 4.1160 2.1385 -0.0105 28 1 6.4151 -0.1197 1.9547 29 1 5.4557 -1.5230 1.4227 30 1 7.4279 -1.6569 -0.3949 31 1 7.5456 -2.4372 1.2002 32 1 9.5290 -0.9277 0.4158 33 1 8.9248 -0.7301 2.0741 34 1 11.5556 0.3307 2.6506 35 1 7.8870 0.5744 -1.2524 36 1 8.0445 2.2612 -0.7078 37 1 5.6666 1.8127 -0.9630 38 1 6.0033 1.8682 0.7820 39 1 4.1160 -2.1383 0.0109 40 1 1.6550 -2.1327 0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371445030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:50 Heat of formation + Delta-G solvation = 59.035781 kcal Electronic energy + Delta-G solvation = -19821.762631 eV Core-core repulsion = 17023.105127 eV Total energy + Delta-G solvation = -2798.657504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10122 -37.72666 -35.11820 -32.34818 -31.89151 -30.80938 -30.56383 -27.42379 -25.94160 -24.76126 -23.85276 -22.09043 -21.25331 -19.71600 -19.29204 -17.33145 -16.46579 -15.43265 -15.20702 -14.89585 -14.47775 -14.09362 -13.94170 -13.66580 -13.45897 -13.32253 -13.01403 -12.42472 -12.27208 -12.02967 -11.56697 -11.49574 -11.37300 -11.14575 -11.05499 -10.87027 -10.53544 -10.46530 -10.17853 -9.86654 -9.77507 -9.59109 -9.04649 -8.73635 -8.43792 -7.26122 -6.64948 -5.79177 -3.26448 1.60287 1.61193 3.34793 3.43033 3.44778 3.89725 4.32696 4.48201 4.97212 5.01869 5.19476 5.34389 5.35417 5.40375 5.57271 5.58566 5.61228 5.73944 5.79926 5.86523 5.91893 6.05955 6.08943 6.22456 6.24251 6.36885 6.46715 6.52691 6.60053 6.70203 6.74363 6.79083 6.80597 6.93032 7.09439 7.42228 7.66154 7.75693 7.82508 7.89312 8.46769 9.23514 9.88668 10.36311 11.28024 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.004985 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.344910 B = 5615.296704 C = 5945.602317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.134 4.134 3 C -0.093 4.093 4 C -0.175 4.175 5 C 0.131 3.869 6 N -0.500 5.500 7 C 0.086 3.914 8 C -0.145 4.145 9 C 0.180 3.820 10 N -0.592 5.592 11 C -0.262 4.262 12 H 0.063 0.937 13 C 0.008 3.992 14 N -0.903 5.903 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.158 3.842 20 C 0.039 3.961 21 C -0.147 4.147 22 C -0.096 4.096 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.253 0.747 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.122 0.878 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 -2.633 -3.898 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.111 4.111 4 C -0.197 4.197 5 C 0.032 3.968 6 N -0.212 5.212 7 C -0.038 4.038 8 C -0.185 4.185 9 C 0.055 3.945 10 N -0.314 5.314 11 C -0.392 4.392 12 H 0.081 0.919 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.730 3.270 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 C 0.029 3.971 20 C -0.092 4.092 21 C -0.168 4.168 22 C -0.114 4.114 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.133 0.867 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.140 0.860 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.205 -2.915 -4.173 16.034 hybrid contribution 0.138 0.921 1.330 1.624 sum -15.067 -1.994 -2.842 15.461 Atomic orbital electron populations 1.20670 0.91811 1.02081 1.01646 1.19708 0.95592 0.93253 1.04918 1.20818 0.93741 0.97152 0.99423 1.21355 0.94462 0.97767 1.06087 1.19153 0.88850 0.93297 0.95539 1.55549 1.02938 1.19417 1.43345 1.21628 0.96156 0.95680 0.90353 1.22195 0.96590 0.98659 1.01036 1.20991 0.91116 0.81514 1.00862 1.43781 1.64631 1.02209 1.20779 1.19232 1.05867 0.99285 1.14783 0.91903 1.25101 0.95404 0.98194 1.00437 1.70054 1.14031 1.31341 1.39254 0.86259 0.77906 0.80051 0.82765 1.20317 1.21592 1.21634 1.20788 0.88194 0.98289 0.89830 1.22315 1.00366 0.86728 0.99789 1.20772 0.93793 0.96968 1.05277 1.20800 0.93667 0.97159 0.99808 0.91925 0.92122 0.92106 0.86668 0.85599 0.92009 0.92230 0.92183 0.92401 0.95526 0.91172 0.93706 0.94040 0.92793 0.91686 0.94594 0.85995 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.13 -1.66 5.88 -104.59 -0.62 -2.27 16 3 C -0.09 -1.22 9.69 -39.61 -0.38 -1.61 16 4 C -0.18 -2.65 8.74 -39.39 -0.34 -3.00 16 5 C 0.13 2.13 5.60 -83.79 -0.47 1.66 16 6 N -0.50 -8.90 3.89 -175.74 -0.68 -9.59 16 7 C 0.09 1.58 5.10 -5.10 -0.03 1.55 16 8 C -0.15 -2.77 5.78 -27.22 -0.16 -2.92 16 9 C 0.18 4.27 4.68 -3.02 -0.01 4.25 16 10 N -0.59 -14.56 2.21 -172.00 -0.38 -14.94 16 11 C -0.26 -7.07 9.44 -15.06 -0.14 -7.21 16 12 H 0.06 1.69 7.86 -52.49 -0.41 1.27 16 13 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 14 N -0.90 -25.92 11.03 55.49 0.61 -25.31 16 15 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 C 0.16 3.32 5.78 -3.97 -0.02 3.30 16 20 C 0.04 0.71 4.13 -5.74 -0.02 0.69 16 21 C -0.15 -2.15 8.77 -39.38 -0.35 -2.49 16 22 C -0.10 -1.22 9.69 -39.61 -0.38 -1.61 16 23 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 24 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.86 5.90 -52.48 -0.31 1.55 16 28 H 0.06 1.31 7.32 -51.93 -0.38 0.93 16 29 H 0.06 0.98 6.26 -51.93 -0.33 0.65 16 30 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.69 8.00 -51.93 -0.42 0.27 16 33 H 0.07 1.84 6.51 -51.92 -0.34 1.50 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.05 1.13 7.98 -51.93 -0.41 0.72 16 37 H 0.06 1.08 6.77 -51.93 -0.35 0.72 16 38 H 0.04 0.72 7.74 -51.93 -0.40 0.32 16 39 H 0.12 1.68 7.41 -52.49 -0.39 1.30 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -28.79 310.97 -9.69 -38.48 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.24 Total: 0.25 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.65 Total: -10.15 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.45 Total: -49.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.79 -9.69 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371445030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.514 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds