Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38299 * 119.92631 * 2 1 4 4 C 1.38099 * 120.07354 * 180.28055 * 3 2 1 5 5 C 1.38905 * 119.92673 * 359.43771 * 4 3 2 6 6 N 1.39672 * 120.07414 * 180.25867 * 5 4 3 7 7 C 1.46203 * 111.00281 * 125.27133 * 6 5 4 8 8 C 1.51215 * 109.09778 * 144.76512 * 7 6 5 9 9 C 1.53795 * 109.63350 * 92.42493 * 8 7 6 10 10 N 1.47609 * 111.30176 * 319.93713 * 9 8 7 11 11 C 1.36939 * 118.75238 * 138.31558 * 10 9 8 12 12 H 1.07998 * 120.00253 * 208.98966 * 11 10 9 13 13 C 1.38821 * 119.99676 * 28.98094 * 11 10 9 14 14 N 1.31621 * 119.99850 * 12.84975 * 13 11 10 15 15 Si 1.86799 * 119.99752 * 192.84203 * 13 11 10 16 16 H 1.48494 * 109.47472 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46603 * 120.00451 * 15 13 11 18 18 H 1.48500 * 109.47070 * 240.00048 * 15 13 11 19 19 C 1.44883 * 122.50573 * 318.33197 * 10 9 8 20 20 C 1.41441 * 111.00143 * 354.23541 * 6 5 4 21 21 C 1.38913 * 119.85420 * 0.28350 * 5 4 3 22 22 C 1.38111 * 119.92093 * 359.97438 * 21 5 4 23 23 H 1.09008 * 109.47191 * 270.27856 * 1 2 3 24 24 H 1.08998 * 109.47497 * 30.28197 * 1 2 3 25 25 H 1.09004 * 109.47478 * 150.28147 * 1 2 3 26 26 H 1.08002 * 119.95730 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.03473 * 179.71765 * 4 3 2 28 28 H 1.08993 * 109.53291 * 264.65998 * 7 6 5 29 29 H 1.09005 * 109.52866 * 24.88289 * 7 6 5 30 30 H 1.08995 * 109.46527 * 332.36152 * 8 7 6 31 31 H 1.09004 * 109.39529 * 212.44575 * 8 7 6 32 32 H 1.08995 * 109.11480 * 199.46036 * 9 8 7 33 33 H 1.09011 * 109.06220 * 80.36688 * 9 8 7 34 34 H 0.97000 * 120.00068 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.43926 * 329.64658 * 19 10 9 36 36 H 1.08998 * 109.40442 * 209.75035 * 19 10 9 37 37 H 1.08996 * 109.38725 * 311.84052 * 20 6 5 38 38 H 1.09004 * 109.38747 * 71.52663 * 20 6 5 39 39 H 1.07991 * 120.04192 * 180.02562 * 21 5 4 40 40 H 1.07998 * 119.96046 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 -0.0059 5 6 4.2739 0.0001 0.0001 6 7 5.6707 0.0002 -0.0004 7 6 6.1950 -0.7823 1.1178 8 6 7.4618 -1.4827 0.6805 9 6 8.6798 -0.6068 1.0190 10 7 8.4067 0.8186 0.7498 11 6 8.8405 1.7541 1.6508 12 1 8.3037 2.6844 1.7641 13 6 9.9701 1.5065 2.4189 14 7 10.7661 0.5035 2.1142 15 14 10.3603 2.5970 3.8845 16 1 9.3169 3.6457 4.0130 17 1 10.3890 1.7737 5.1201 18 1 11.6851 3.2378 3.6857 19 6 7.6969 1.2657 -0.4315 20 6 6.1775 1.3133 -0.1399 21 6 3.5779 -1.2020 0.0059 22 6 2.1968 -1.1984 0.0063 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6550 2.1328 -0.0004 27 1 4.1160 2.1385 -0.0105 28 1 6.4151 -0.1197 1.9547 29 1 5.4557 -1.5230 1.4227 30 1 7.4279 -1.6569 -0.3949 31 1 7.5456 -2.4372 1.2002 32 1 9.5290 -0.9277 0.4158 33 1 8.9248 -0.7301 2.0741 34 1 11.5556 0.3307 2.6506 35 1 7.8870 0.5744 -1.2524 36 1 8.0445 2.2612 -0.7078 37 1 5.6666 1.8127 -0.9630 38 1 6.0033 1.8682 0.7820 39 1 4.1160 -2.1383 0.0109 40 1 1.6550 -2.1327 0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371445030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = 44.255620 kcal Electronic energy + Delta-G solvation = -19822.403547 eV Core-core repulsion = 17023.105127 eV Total energy + Delta-G solvation = -2799.298420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36657 -39.07564 -36.76685 -33.95702 -33.50281 -32.21631 -31.69864 -28.99120 -27.42923 -26.19478 -25.54022 -23.36917 -22.52108 -21.10670 -20.99629 -18.84566 -18.17964 -17.04064 -16.64951 -16.18852 -16.02872 -15.54921 -15.42035 -15.09315 -14.63319 -14.50180 -14.34063 -13.88280 -13.74869 -13.25631 -13.13021 -12.93657 -12.85606 -12.67081 -12.44172 -12.34598 -12.22000 -12.07362 -11.71838 -11.68297 -11.45567 -11.41550 -10.51296 -10.29531 -9.79040 -8.68694 -8.48931 -7.87922 -5.37974 0.52637 0.55228 1.42704 1.44755 1.54697 2.48549 2.75731 3.05898 3.26738 3.64970 3.96725 4.03816 4.13160 4.20786 4.26468 4.30994 4.45195 4.52800 4.58389 4.60707 4.78201 4.80613 4.86473 4.92795 4.93366 4.97750 5.06297 5.17365 5.21786 5.24985 5.27964 5.45412 5.52335 5.56119 5.64178 5.75136 5.79624 6.04402 6.36602 6.39672 6.58171 7.16559 7.90416 8.32417 9.17242 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.004985 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.344910 B = 5615.296704 C = 5945.602317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.187 4.187 5 C 0.101 3.899 6 N -0.505 5.505 7 C 0.095 3.905 8 C -0.130 4.130 9 C 0.190 3.810 10 N -0.606 5.606 11 C -0.268 4.268 12 H 0.061 0.939 13 C -0.044 4.044 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.155 3.845 20 C 0.059 3.941 21 C -0.152 4.152 22 C -0.098 4.098 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.080 0.920 32 H -0.004 1.004 33 H 0.038 0.962 34 H 0.249 0.751 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.128 0.872 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 -2.878 -4.105 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.208 4.208 5 C 0.003 3.997 6 N -0.218 5.218 7 C -0.029 4.029 8 C -0.169 4.169 9 C 0.066 3.934 10 N -0.329 5.329 11 C -0.398 4.398 12 H 0.078 0.922 13 C -0.239 4.239 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.027 3.973 20 C -0.071 4.071 21 C -0.173 4.173 22 C -0.116 4.116 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.034 0.966 39 H 0.146 0.854 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.205 -3.151 -4.404 18.993 hybrid contribution 0.918 1.001 1.342 1.909 sum -17.287 -2.149 -3.062 17.687 Atomic orbital electron populations 1.20739 0.89274 1.03432 1.02691 1.20163 0.97492 0.92732 1.02558 1.21114 0.93068 0.98684 0.98946 1.21449 0.95547 0.97265 1.06579 1.19270 0.87872 0.94540 0.98020 1.55572 1.04370 1.18658 1.43210 1.21482 0.96352 0.95519 0.89597 1.22016 0.94731 0.98568 1.01567 1.20749 0.92388 0.82098 0.98214 1.43975 1.65004 1.02256 1.21617 1.19482 1.05620 0.99569 1.15175 0.92172 1.25806 0.95485 0.99690 1.02959 1.70209 1.14434 1.32975 1.40283 0.85271 0.77548 0.78504 0.79503 1.19397 1.21654 1.21708 1.20910 0.89700 0.97939 0.88706 1.21993 0.98178 0.87457 0.99515 1.20941 0.94749 0.96528 1.05051 1.21155 0.93069 0.98628 0.98772 0.90888 0.91016 0.90649 0.84576 0.86111 0.95443 0.89821 0.91658 0.90136 0.98618 0.94349 0.94135 0.93847 0.93169 0.89591 0.96638 0.85437 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.01 71.23 0.71 -0.78 16 2 C -0.13 -2.74 5.88 -19.84 -0.12 -2.86 16 3 C -0.10 -2.37 9.69 22.25 0.22 -2.15 16 4 C -0.19 -5.40 8.74 22.40 0.20 -5.21 16 5 C 0.10 3.13 5.60 38.21 0.21 3.35 16 6 N -0.50 -17.66 3.89 -709.92 -2.76 -20.42 16 7 C 0.10 3.47 5.10 85.85 0.44 3.90 16 8 C -0.13 -4.92 5.78 30.28 0.18 -4.74 16 9 C 0.19 9.37 4.68 86.44 0.40 9.77 16 10 N -0.61 -30.73 2.21 -698.08 -1.54 -32.27 16 11 C -0.27 -14.86 9.44 84.04 0.79 -14.07 16 12 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 13 C -0.04 -2.46 4.94 84.86 0.42 -2.04 16 14 N -0.93 -55.43 11.03 21.65 0.24 -55.19 16 15 Si 0.96 45.33 29.57 68.60 2.03 47.36 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 C 0.15 6.63 5.78 87.29 0.50 7.14 16 20 C 0.06 2.18 4.13 87.91 0.36 2.55 16 21 C -0.15 -4.08 8.77 22.40 0.20 -3.88 16 22 C -0.10 -2.17 9.69 22.25 0.22 -1.95 16 23 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 25 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 26 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 27 H 0.12 3.50 5.90 -2.91 -0.02 3.48 16 28 H 0.03 1.18 7.32 -2.39 -0.02 1.16 16 29 H 0.08 2.62 6.26 -2.38 -0.01 2.61 16 30 H 0.06 2.42 7.98 -2.39 -0.02 2.41 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.00 -0.23 8.00 -2.39 -0.02 -0.25 16 33 H 0.04 2.10 6.51 -2.38 -0.02 2.09 16 34 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.04 1.83 8.11 -2.39 -0.02 1.81 16 36 H 0.05 2.15 7.98 -2.39 -0.02 2.13 16 37 H 0.09 2.79 6.77 -2.39 -0.02 2.77 16 38 H 0.02 0.63 7.74 -2.38 -0.02 0.61 16 39 H 0.13 3.20 7.41 -2.92 -0.02 3.18 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -63.35 310.97 3.70 -59.65 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.00 Total: 11.84 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.73 Total: -10.97 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.07 Total: -107.88 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -63.35 3.70 -59.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371445030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.906 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds