Wall clock time and date at job start Mon Mar 30 2020 07:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47032 * 2 1 4 4 C 1.38671 * 120.41916 * 90.00306 * 3 2 1 5 5 C 1.38622 * 118.42562 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.15956 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.62075 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47311 * 94.99599 * 7 6 5 9 9 C 1.46899 * 110.99788 * 170.00086 * 8 7 6 10 10 C 1.50699 * 109.46959 * 290.10423 * 9 8 7 11 11 H 1.08005 * 120.00489 * 356.73220 * 10 9 8 12 12 C 1.37883 * 119.99626 * 177.00341 * 10 9 8 13 13 N 1.31518 * 119.99677 * 179.72979 * 12 10 9 14 14 Si 1.86797 * 120.00257 * 359.72414 * 12 10 9 15 15 H 1.48500 * 109.46651 * 89.99871 * 14 12 10 16 16 H 1.48498 * 109.47277 * 210.00099 * 14 12 10 17 17 H 1.48504 * 109.47104 * 330.00266 * 14 12 10 18 18 C 1.46900 * 111.00133 * 293.95706 * 8 7 6 19 19 C 1.52997 * 117.49669 * 242.30477 * 18 8 7 20 20 C 1.52998 * 117.49828 * 173.64726 * 18 8 7 21 21 N 1.31859 * 120.75880 * 0.25751 * 6 5 4 22 22 C 1.31879 * 121.72548 * 359.47460 * 21 6 5 23 23 H 1.08998 * 109.46568 * 59.99854 * 1 2 3 24 24 H 1.08997 * 109.46575 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46890 * 299.99605 * 1 2 3 26 26 H 1.09004 * 109.47198 * 240.00194 * 2 1 3 27 27 H 1.09005 * 109.47352 * 119.99855 * 2 1 3 28 28 H 1.08004 * 120.78899 * 359.97438 * 4 3 2 29 29 H 1.08001 * 120.42360 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.46664 * 335.00135 * 7 6 5 31 31 H 1.08992 * 109.47014 * 215.00033 * 7 6 5 32 32 H 1.08996 * 109.46899 * 170.10900 * 9 8 7 33 33 H 1.08997 * 109.47487 * 50.10492 * 9 8 7 34 34 H 0.96998 * 119.99966 * 179.97438 * 13 12 10 35 35 H 1.09000 * 115.55056 * 27.97666 * 18 8 7 36 36 H 1.09000 * 117.49861 * 0.02562 * 19 18 8 37 37 H 1.09007 * 117.49517 * 145.02177 * 19 18 8 38 38 H 1.09000 * 117.49915 * 214.98233 * 20 18 8 39 39 H 1.09002 * 117.49551 * 359.97438 * 20 18 8 40 40 H 1.08004 * 119.61630 * 180.26696 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3891 1.1476 6 6 2.9380 3.9842 -0.0823 7 6 3.4387 5.4041 -0.1468 8 7 4.9010 5.4018 -0.2878 9 6 5.4027 6.7487 -0.5908 10 6 4.9914 7.1354 -1.9881 11 1 4.4607 6.4294 -2.6097 12 6 5.2975 8.3886 -2.4749 13 7 4.9432 8.7241 -3.6962 14 14 6.2153 9.6097 -1.3998 15 1 7.6773 9.4461 -1.6023 16 1 5.8160 10.9917 -1.7685 17 1 5.8823 9.3619 0.0260 18 6 5.5450 4.8584 0.9155 19 6 6.4684 5.7892 1.7040 20 6 7.0599 4.6484 0.8723 21 7 2.7002 3.3256 -1.1996 22 6 2.2659 2.0804 -1.1916 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0927 1.5925 2.1423 29 1 2.9211 3.9348 2.0593 30 1 3.1628 5.9285 0.7681 31 1 2.9919 5.9083 -1.0036 32 1 6.4901 6.7565 -0.5170 33 1 4.9851 7.4608 0.1210 34 1 5.1583 9.6058 -4.0386 35 1 4.9531 4.1390 1.4814 36 1 6.5977 6.8049 1.3301 37 1 6.4843 5.6819 2.7886 38 1 7.4647 3.7910 1.4100 39 1 7.5785 4.9131 -0.0492 40 1 2.0864 1.5717 -2.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379275585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:13 Heat of formation + Delta-G solvation = 64.285047 kcal Electronic energy + Delta-G solvation = -19245.387681 eV Core-core repulsion = 16446.957803 eV Total energy + Delta-G solvation = -2798.429879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20127 -38.15085 -34.98957 -33.56890 -32.36514 -31.81410 -30.07252 -27.62754 -25.45763 -23.64505 -22.89230 -22.41217 -21.72167 -20.93345 -18.96513 -17.12957 -16.53890 -16.03617 -15.62406 -15.28382 -14.69753 -14.12108 -14.04273 -13.81894 -13.56160 -13.18568 -12.95846 -12.68580 -12.56212 -12.17036 -12.03034 -11.57170 -11.43718 -11.30487 -11.10852 -10.94318 -10.71814 -10.41218 -10.24409 -9.90394 -9.78104 -9.54602 -9.19954 -9.02055 -8.61095 -8.52211 -7.24919 -6.01329 -3.98699 1.28206 1.49377 3.29244 3.36710 3.37355 3.92483 4.31239 4.43670 4.52759 4.72843 4.77180 4.79821 5.00697 5.07378 5.20431 5.29242 5.31157 5.36568 5.37649 5.42606 5.55582 5.65771 5.70355 5.85993 5.88009 6.01453 6.01875 6.05382 6.07736 6.29375 6.36676 6.41327 6.53686 6.60100 6.82329 6.91089 6.96722 7.61104 7.86194 8.01523 8.38465 8.68288 9.12115 9.59741 11.11791 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.005067 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.415180 B = 5524.239469 C = 6254.870844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.150 4.150 4 C -0.077 4.077 5 C -0.173 4.173 6 C 0.151 3.849 7 C 0.108 3.892 8 N -0.484 5.484 9 C 0.161 3.839 10 C -0.509 4.509 11 H 0.085 0.915 12 C 0.070 3.930 13 N -0.898 5.898 14 Si 0.869 3.131 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.019 3.981 19 C -0.226 4.226 20 C -0.174 4.174 21 N -0.455 5.455 22 C 0.104 3.896 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.030 0.970 33 H -0.005 1.005 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -14.541 12.121 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.193 4.193 6 C 0.013 3.987 7 C -0.020 4.020 8 N -0.205 5.205 9 C 0.035 3.965 10 C -0.548 4.548 11 H 0.103 0.897 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.697 3.303 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.091 4.091 19 C -0.265 4.265 20 C -0.212 4.212 21 N -0.163 5.163 22 C -0.054 4.054 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.236 -14.235 10.757 18.594 hybrid contribution 0.317 0.817 2.010 2.193 sum -4.919 -13.418 12.767 19.163 Atomic orbital electron populations 1.21759 0.94819 1.01563 1.02291 1.20418 0.96012 0.92186 1.02846 1.20840 1.02335 0.97623 0.94458 1.21337 0.96819 0.94288 0.97819 1.22004 1.02244 0.95967 0.99101 1.21406 0.92843 0.96643 0.87810 1.20931 0.89316 0.89416 1.02368 1.61747 1.02768 1.26168 1.29851 1.20313 0.95502 0.83412 0.97269 1.21088 1.37091 0.99594 0.97008 0.89665 1.24880 0.95600 0.97841 0.94828 1.69898 1.47240 1.20925 1.15651 0.86952 0.80719 0.81149 0.81498 1.20170 1.21162 1.19212 1.22781 0.92057 1.00691 0.93592 1.23571 1.07965 0.97265 0.97706 1.22992 0.96696 0.99470 1.02026 1.67613 1.09573 1.07919 1.31161 1.22698 0.94823 0.90708 0.97176 0.92398 0.92458 0.92720 0.90824 0.91214 0.85510 0.85303 0.94121 0.87214 0.95222 0.98746 0.92703 0.87485 0.88065 0.89786 0.89441 0.88356 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.67 6.09 -27.88 -0.17 -0.84 16 3 C -0.15 -1.81 5.15 -104.48 -0.54 -2.35 16 4 C -0.08 -0.92 9.86 -39.28 -0.39 -1.30 16 5 C -0.17 -2.41 8.11 -39.44 -0.32 -2.73 16 6 C 0.15 2.65 5.82 -82.58 -0.48 2.17 16 7 C 0.11 2.13 5.14 -4.98 -0.03 2.10 16 8 N -0.48 -10.37 4.66 -229.53 -1.07 -11.44 16 9 C 0.16 3.89 2.44 -4.98 -0.01 3.88 16 10 C -0.51 -14.62 8.91 -34.44 -0.31 -14.92 16 11 H 0.09 2.72 7.81 -52.48 -0.41 2.31 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 14 Si 0.87 21.47 27.53 -169.99 -4.68 16.79 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.31 6.45 56.52 0.36 -5.94 16 18 C 0.02 0.34 5.80 -67.72 -0.39 -0.06 16 19 C -0.23 -3.74 9.53 -26.70 -0.25 -3.99 16 20 C -0.17 -2.89 9.97 -26.70 -0.27 -3.16 16 21 N -0.45 -8.40 10.27 -9.47 -0.10 -8.50 16 22 C 0.10 1.52 10.86 -17.55 -0.19 1.32 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.13 1.55 7.70 -52.49 -0.40 1.14 16 30 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 31 H 0.11 2.49 7.01 -51.93 -0.36 2.12 16 32 H 0.03 0.73 5.55 -51.93 -0.29 0.44 16 33 H -0.01 -0.12 6.67 -51.93 -0.35 -0.47 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.11 1.70 5.62 -51.93 -0.29 1.41 16 36 H 0.10 1.88 5.92 -51.93 -0.31 1.57 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.81 7.70 -51.93 -0.40 1.41 16 40 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -31.88 323.45 -9.47 -41.35 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.20 Total: 2.62 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.07 Total: -18.72 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.39 Total: -46.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.68 Total: 16.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.88 -9.47 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379275585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.638 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds