Wall clock time and date at job start Mon Mar 30 2020 07:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47032 * 2 1 4 4 C 1.38671 * 120.41916 * 90.00306 * 3 2 1 5 5 C 1.38622 * 118.42562 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.15956 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.62075 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47311 * 94.99599 * 7 6 5 9 9 C 1.46899 * 110.99788 * 170.00086 * 8 7 6 10 10 C 1.50699 * 109.46959 * 290.10423 * 9 8 7 11 11 H 1.08005 * 120.00489 * 356.73220 * 10 9 8 12 12 C 1.37883 * 119.99626 * 177.00341 * 10 9 8 13 13 N 1.31518 * 119.99677 * 179.72979 * 12 10 9 14 14 Si 1.86797 * 120.00257 * 359.72414 * 12 10 9 15 15 H 1.48500 * 109.46651 * 89.99871 * 14 12 10 16 16 H 1.48498 * 109.47277 * 210.00099 * 14 12 10 17 17 H 1.48504 * 109.47104 * 330.00266 * 14 12 10 18 18 C 1.46900 * 111.00133 * 293.95706 * 8 7 6 19 19 C 1.52997 * 117.49669 * 242.30477 * 18 8 7 20 20 C 1.52998 * 117.49828 * 173.64726 * 18 8 7 21 21 N 1.31859 * 120.75880 * 0.25751 * 6 5 4 22 22 C 1.31879 * 121.72548 * 359.47460 * 21 6 5 23 23 H 1.08998 * 109.46568 * 59.99854 * 1 2 3 24 24 H 1.08997 * 109.46575 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46890 * 299.99605 * 1 2 3 26 26 H 1.09004 * 109.47198 * 240.00194 * 2 1 3 27 27 H 1.09005 * 109.47352 * 119.99855 * 2 1 3 28 28 H 1.08004 * 120.78899 * 359.97438 * 4 3 2 29 29 H 1.08001 * 120.42360 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.46664 * 335.00135 * 7 6 5 31 31 H 1.08992 * 109.47014 * 215.00033 * 7 6 5 32 32 H 1.08996 * 109.46899 * 170.10900 * 9 8 7 33 33 H 1.08997 * 109.47487 * 50.10492 * 9 8 7 34 34 H 0.96998 * 119.99966 * 179.97438 * 13 12 10 35 35 H 1.09000 * 115.55056 * 27.97666 * 18 8 7 36 36 H 1.09000 * 117.49861 * 0.02562 * 19 18 8 37 37 H 1.09007 * 117.49517 * 145.02177 * 19 18 8 38 38 H 1.09000 * 117.49915 * 214.98233 * 20 18 8 39 39 H 1.09002 * 117.49551 * 359.97438 * 20 18 8 40 40 H 1.08004 * 119.61630 * 180.26696 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3891 1.1476 6 6 2.9380 3.9842 -0.0823 7 6 3.4387 5.4041 -0.1468 8 7 4.9010 5.4018 -0.2878 9 6 5.4027 6.7487 -0.5908 10 6 4.9914 7.1354 -1.9881 11 1 4.4607 6.4294 -2.6097 12 6 5.2975 8.3886 -2.4749 13 7 4.9432 8.7241 -3.6962 14 14 6.2153 9.6097 -1.3998 15 1 7.6773 9.4461 -1.6023 16 1 5.8160 10.9917 -1.7685 17 1 5.8823 9.3619 0.0260 18 6 5.5450 4.8584 0.9155 19 6 6.4684 5.7892 1.7040 20 6 7.0599 4.6484 0.8723 21 7 2.7002 3.3256 -1.1996 22 6 2.2659 2.0804 -1.1916 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0927 1.5925 2.1423 29 1 2.9211 3.9348 2.0593 30 1 3.1628 5.9285 0.7681 31 1 2.9919 5.9083 -1.0036 32 1 6.4901 6.7565 -0.5170 33 1 4.9851 7.4608 0.1210 34 1 5.1583 9.6058 -4.0386 35 1 4.9531 4.1390 1.4814 36 1 6.5977 6.8049 1.3301 37 1 6.4843 5.6819 2.7886 38 1 7.4647 3.7910 1.4100 39 1 7.5785 4.9131 -0.0492 40 1 2.0864 1.5717 -2.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379275585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:13 Heat of formation + Delta-G solvation = 43.316418 kcal Electronic energy + Delta-G solvation = -19246.296949 eV Core-core repulsion = 16446.957803 eV Total energy + Delta-G solvation = -2799.339147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35197 -39.60672 -36.01240 -35.24040 -34.17792 -32.98910 -31.36605 -29.32717 -26.83942 -24.75732 -24.15409 -23.91792 -23.11585 -21.94272 -20.53648 -19.17181 -17.66265 -17.46310 -17.01160 -16.43501 -16.09844 -16.02237 -15.05160 -14.88992 -14.73561 -14.64699 -14.37416 -14.05662 -13.79421 -13.58976 -13.25414 -13.11603 -12.83231 -12.49513 -12.39774 -12.27367 -12.09210 -11.96339 -11.76173 -11.65402 -11.27045 -11.19499 -10.79235 -10.64013 -10.17982 -9.70041 -8.83854 -8.28507 -6.32390 0.17700 0.45306 1.32155 1.34154 1.44437 2.32706 2.69471 3.00683 3.04229 3.33206 3.40208 3.83513 3.88753 4.01798 4.06266 4.10056 4.11439 4.20794 4.37209 4.52995 4.54547 4.55692 4.64194 4.77928 4.80496 4.81527 4.90748 5.01641 5.05216 5.09157 5.11535 5.13790 5.24551 5.29690 5.41352 5.46484 5.53160 5.86145 5.97657 6.33856 6.64521 6.75454 7.24036 7.30678 8.88838 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.005067 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.415180 B = 5524.239469 C = 6254.870844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.070 4.070 5 C -0.164 4.164 6 C 0.121 3.879 7 C 0.115 3.885 8 N -0.508 5.508 9 C 0.178 3.822 10 C -0.518 4.518 11 H 0.030 0.970 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.946 3.054 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.246 1.246 18 C 0.004 3.996 19 C -0.213 4.213 20 C -0.172 4.172 21 N -0.509 5.509 22 C 0.083 3.917 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.169 0.831 29 H 0.153 0.847 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.031 0.969 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -16.291 16.120 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.185 4.185 6 C -0.017 4.017 7 C -0.013 4.013 8 N -0.230 5.230 9 C 0.051 3.949 10 C -0.556 4.556 11 H 0.049 0.951 12 C -0.189 4.189 13 N -0.589 5.589 14 Si 0.769 3.231 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.170 1.170 18 C -0.105 4.105 19 C -0.252 4.252 20 C -0.210 4.210 21 N -0.218 5.218 22 C -0.075 4.075 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.186 0.814 29 H 0.171 0.829 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.795 -16.012 14.771 22.305 hybrid contribution 0.081 1.199 0.681 1.382 sum -4.713 -14.812 15.452 21.918 Atomic orbital electron populations 1.21746 0.94079 1.02666 1.01764 1.20513 0.96449 0.89888 1.04328 1.21220 0.99963 0.99010 0.93515 1.21802 0.95086 0.93338 0.99365 1.22152 1.01277 0.96893 0.98139 1.21095 0.95550 0.95709 0.89299 1.20733 0.88299 0.91546 1.00734 1.61569 1.04029 1.24291 1.33104 1.19970 0.95299 0.85392 0.94219 1.21281 1.36467 0.98965 0.98897 0.95149 1.25867 0.96580 1.00106 0.96326 1.70073 1.49032 1.21818 1.18025 0.85733 0.79282 0.77875 0.80197 1.19048 1.20522 1.16969 1.22919 0.92741 1.01956 0.92882 1.23578 1.06242 0.95790 0.99548 1.23069 0.95572 1.00884 1.01487 1.67432 1.11483 1.10065 1.32816 1.22993 0.95474 0.89873 0.99117 0.93628 0.90571 0.92608 0.90141 0.88993 0.81368 0.82944 0.92462 0.92251 0.95085 0.98565 0.92432 0.85055 0.90245 0.86149 0.86080 0.90943 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.07 -1.03 6.09 29.85 0.18 -0.85 16 3 C -0.13 -2.93 5.15 -19.77 -0.10 -3.03 16 4 C -0.07 -1.42 9.86 22.47 0.22 -1.20 16 5 C -0.16 -4.22 8.11 22.36 0.18 -4.03 16 6 C 0.12 4.32 5.82 42.55 0.25 4.57 16 7 C 0.11 4.76 5.14 85.56 0.44 5.20 16 8 N -0.51 -22.38 4.66 -880.09 -4.10 -26.49 16 9 C 0.18 8.84 2.44 85.56 0.21 9.05 16 10 C -0.52 -31.58 8.91 25.60 0.23 -31.35 16 11 H 0.03 2.12 7.81 -2.91 -0.02 2.10 16 12 C 0.01 0.50 5.47 84.66 0.46 0.96 16 13 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 14 Si 0.95 45.04 27.53 68.60 1.89 46.93 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.25 -10.79 6.45 99.48 0.64 -10.14 16 18 C 0.00 0.14 5.80 44.91 0.26 0.40 16 19 C -0.21 -6.41 9.53 30.62 0.29 -6.12 16 20 C -0.17 -5.36 9.97 30.62 0.31 -5.05 16 21 N -0.51 -19.75 10.27 -183.88 -1.89 -21.64 16 22 C 0.08 2.43 10.86 84.67 0.92 3.35 16 23 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.09 0.95 8.10 -2.38 -0.02 0.93 16 28 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.15 3.10 7.70 -2.91 -0.02 3.08 16 30 H 0.06 2.08 8.02 -2.38 -0.02 2.06 16 31 H 0.06 2.98 7.01 -2.39 -0.02 2.97 16 32 H 0.03 1.53 5.55 -2.39 -0.01 1.52 16 33 H 0.00 -0.16 6.67 -2.39 -0.02 -0.18 16 34 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 35 H 0.13 3.77 5.62 -2.39 -0.01 3.75 16 36 H 0.08 2.78 5.92 -2.39 -0.01 2.76 16 37 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.07 2.63 7.70 -2.39 -0.02 2.61 16 40 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -75.61 323.45 1.70 -73.91 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.95 Total: 17.80 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.56 Total: -29.25 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -5.69 Total: -109.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.89 Total: 46.93 kcal Total: -75.61 1.70 -73.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379275585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.225 kcal (2) G-P(sol) polarization free energy of solvation -75.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds