Wall clock time and date at job start Mon Mar 30 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 C 1.52999 * 109.46761 * 120.00090 * 2 1 3 5 5 N 1.46500 * 115.55296 * 36.86848 * 4 2 1 6 6 C 1.39853 * 120.00218 * 65.35971 * 5 4 2 7 7 C 1.39594 * 119.83746 * 6.08014 * 6 5 4 8 8 C 1.38065 * 120.54870 * 179.72365 * 7 6 5 9 9 C 1.38735 * 120.21549 * 0.54628 * 8 7 6 10 10 N 1.38870 * 120.15928 * 179.74762 * 9 8 7 11 11 C 1.41556 * 119.67551 * 359.72853 * 9 8 7 12 12 C 1.41031 * 120.26608 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00235 * 331.91728 * 12 11 9 14 14 C 1.39885 * 119.99739 * 151.91772 * 12 11 9 15 15 N 1.30901 * 120.00113 * 159.98238 * 14 12 11 16 16 Si 1.86803 * 119.99932 * 339.98030 * 14 12 11 17 17 H 1.48504 * 109.46865 * 94.39678 * 16 14 12 18 18 H 1.48508 * 109.47152 * 214.39273 * 16 14 12 19 19 H 1.48497 * 109.47391 * 334.39551 * 16 14 12 20 20 C 1.38006 * 119.83694 * 186.35012 * 6 5 4 21 21 C 1.53005 * 117.49835 * 251.15312 * 4 2 1 22 22 C 1.52995 * 59.99911 * 252.51608 * 21 4 2 23 23 H 1.08998 * 109.47035 * 294.02217 * 1 2 3 24 24 H 1.09004 * 109.46553 * 174.01980 * 1 2 3 25 25 H 1.08998 * 109.46989 * 54.02338 * 1 2 3 26 26 H 1.08997 * 109.47165 * 239.99949 * 2 1 3 27 27 H 1.08997 * 109.47305 * 60.00035 * 3 2 1 28 28 H 1.08999 * 109.46777 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47572 * 299.99622 * 3 2 1 30 30 H 0.97006 * 119.99560 * 245.36026 * 5 4 2 31 31 H 1.08003 * 119.72932 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.89040 * 180.27660 * 8 7 6 33 33 H 0.96993 * 119.99577 * 185.25768 * 10 9 8 34 34 H 0.97001 * 120.00268 * 5.26593 * 10 9 8 35 35 H 0.96999 * 120.00128 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.11775 * 0.02620 * 20 6 5 37 37 H 1.09007 * 117.49638 * 0.02562 * 21 4 2 38 38 H 1.09000 * 117.49753 * 145.01870 * 21 4 2 39 39 H 1.09001 * 117.49965 * 252.50684 * 22 21 4 40 40 H 1.09000 * 117.50347 * 107.49472 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.2536 -1.8821 1.6739 6 6 1.1849 -3.0163 0.8586 7 6 1.9661 -3.0902 -0.2959 8 6 1.9140 -4.2053 -1.1083 9 6 1.0736 -5.2622 -0.7903 10 7 1.0182 -6.3811 -1.6110 11 6 0.2730 -5.1948 0.3752 12 6 -0.5862 -6.2618 0.7102 13 1 -0.9916 -6.8930 -0.0667 14 6 -0.9133 -6.5026 2.0488 15 7 -1.9780 -7.2036 2.3465 16 14 0.1691 -5.8238 3.4115 17 1 -0.3719 -4.5189 3.8697 18 1 0.1897 -6.7781 4.5491 19 1 1.5500 -5.6346 2.8990 20 6 0.3409 -4.0547 1.1964 21 6 2.6888 0.1311 2.3418 22 6 3.5537 -0.7763 1.4647 23 1 -0.3633 0.4183 0.9386 24 1 -0.3632 -1.0221 -0.1071 25 1 -0.3633 0.6037 -0.8316 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.7806 -1.8640 2.5206 31 1 2.6197 -2.2699 -0.5537 32 1 2.5264 -4.2531 -1.9967 33 1 0.3756 -7.0845 -1.4293 34 1 1.6223 -6.4591 -2.3660 35 1 -2.2050 -7.3703 3.2747 36 1 -0.2655 -3.9920 2.0878 37 1 2.7519 1.2058 2.1706 38 1 2.5304 -0.1717 3.3768 39 1 3.9645 -1.6761 1.9227 40 1 4.1863 -0.2988 0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379728275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:15 Heat of formation + Delta-G solvation = 42.744557 kcal Electronic energy + Delta-G solvation = -19908.372511 eV Core-core repulsion = 17109.008566 eV Total energy + Delta-G solvation = -2799.363944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.27812 -37.61076 -34.14521 -33.38247 -32.83417 -31.02048 -30.18379 -27.02268 -26.06741 -24.77629 -23.11939 -22.11193 -21.41990 -19.92166 -18.52936 -17.12269 -16.35069 -15.95717 -15.70541 -14.99651 -14.86983 -14.55410 -14.06589 -13.07345 -13.05413 -12.71649 -12.57496 -12.34707 -12.11897 -11.97409 -11.74238 -11.47482 -11.26849 -11.13816 -10.97008 -10.75574 -10.66891 -10.57028 -10.47345 -9.95661 -9.61351 -9.51257 -9.38226 -8.99138 -7.88702 -7.47981 -6.80812 -5.79243 -4.15749 2.80593 3.04640 3.20952 3.38405 3.44940 3.93820 4.10745 4.11897 4.70085 4.80691 5.05566 5.12143 5.31293 5.33676 5.45249 5.54812 5.65039 5.72291 5.82316 5.98504 5.99241 6.07202 6.12004 6.19506 6.29123 6.40132 6.45081 6.58981 6.68546 6.78089 6.90113 7.20691 7.32091 7.46847 7.60553 7.79947 8.01430 8.32821 8.51123 8.61955 8.72406 8.91293 9.11268 9.17479 10.22549 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.006951 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.138256 B = 4027.364450 C = 4617.357860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.147 4.147 4 C 0.136 3.864 5 N -0.730 5.730 6 C 0.204 3.796 7 C -0.249 4.249 8 C -0.145 4.145 9 C 0.096 3.904 10 N -0.886 5.886 11 C 0.081 3.919 12 C -0.450 4.450 13 H 0.085 0.915 14 C 0.085 3.915 15 N -0.820 5.820 16 Si 0.917 3.083 17 H -0.276 1.276 18 H -0.299 1.299 19 H -0.247 1.247 20 C -0.277 4.277 21 C -0.187 4.187 22 C -0.186 4.186 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.389 0.611 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.392 0.608 34 H 0.376 0.624 35 H 0.281 0.719 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 11.893 -1.539 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.205 4.205 4 C 0.046 3.954 5 N -0.362 5.362 6 C 0.105 3.895 7 C -0.272 4.272 8 C -0.170 4.170 9 C -0.005 4.005 10 N -0.429 5.429 11 C 0.075 3.925 12 C -0.479 4.479 13 H 0.103 0.897 14 C -0.132 4.132 15 N -0.446 5.446 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.227 1.227 19 H -0.171 1.171 20 C -0.301 4.301 21 C -0.224 4.224 22 C -0.225 4.225 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.223 0.777 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.220 0.780 34 H 0.201 0.799 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.894 11.870 -1.432 13.801 hybrid contribution 0.186 -0.115 0.910 0.936 sum 7.080 11.754 -0.522 13.732 Atomic orbital electron populations 1.21659 0.94497 1.02755 1.00368 1.20872 0.96559 0.94441 0.96852 1.21980 1.00712 0.96286 1.01527 1.20256 0.90101 0.89594 0.95412 1.43760 1.56754 1.12824 1.22905 1.17252 0.95277 0.85857 0.91075 1.19693 1.08239 1.00186 0.99117 1.19821 1.02759 0.94238 1.00149 1.17732 0.99422 0.88720 0.94655 1.41854 1.44556 1.23030 1.33444 1.17103 0.91966 0.92700 0.90706 1.19071 1.23308 1.12209 0.93354 0.89685 1.26047 0.93868 0.92940 1.00306 1.69755 1.21035 1.32582 1.21186 0.86233 0.83188 0.77322 0.78716 1.20296 1.22731 1.17058 1.20210 1.08624 0.95823 1.05413 1.23381 1.04879 0.97911 0.96240 1.23360 0.94781 1.01545 1.02765 0.93420 0.91335 0.93596 0.90284 0.92521 0.92792 0.92748 0.77721 0.88693 0.89340 0.77962 0.79854 0.90907 0.88417 0.87982 0.89210 0.88744 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.67 37.16 0.32 -1.64 16 2 C -0.07 -0.93 2.64 -90.62 -0.24 -1.17 16 3 C -0.15 -1.58 7.82 37.16 0.29 -1.29 16 4 C 0.14 2.02 1.46 -131.82 -0.19 1.82 16 5 N -0.73 -13.20 4.76 -45.99 -0.22 -13.42 16 6 C 0.20 4.41 5.81 -83.78 -0.49 3.92 16 7 C -0.25 -5.23 8.76 -39.14 -0.34 -5.58 16 8 C -0.14 -3.12 9.87 -39.46 -0.39 -3.51 16 9 C 0.10 2.23 6.79 -83.23 -0.56 1.67 16 10 N -0.89 -17.70 8.97 32.75 0.29 -17.41 16 11 C 0.08 2.07 5.15 -106.66 -0.55 1.52 16 12 C -0.45 -12.15 8.99 -37.91 -0.34 -12.49 16 13 H 0.09 2.36 6.88 -52.49 -0.36 2.00 16 14 C 0.09 2.28 5.39 -17.33 -0.09 2.19 16 15 N -0.82 -22.33 13.93 55.55 0.77 -21.56 16 16 Si 0.92 21.77 24.54 -169.99 -4.17 17.59 16 17 H -0.28 -6.36 6.62 56.52 0.37 -5.98 16 18 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.25 -6.10 6.96 56.52 0.39 -5.71 16 20 C -0.28 -6.74 7.08 -38.75 -0.27 -7.01 16 21 C -0.19 -2.30 9.53 -26.73 -0.25 -2.55 16 22 C -0.19 -2.54 9.22 -26.73 -0.25 -2.79 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.20 7.17 -51.93 -0.37 0.83 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.19 6.59 -51.93 -0.34 0.85 16 27 H 0.06 0.57 6.85 -51.93 -0.36 0.21 16 28 H 0.05 0.53 7.02 -51.93 -0.36 0.17 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.39 6.83 8.84 -40.82 -0.36 6.47 16 31 H 0.10 1.83 5.23 -52.48 -0.27 1.55 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.39 7.90 7.07 -40.82 -0.29 7.61 16 34 H 0.38 6.28 8.84 -40.82 -0.36 5.92 16 35 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 36 H 0.10 2.42 4.60 -52.49 -0.24 2.18 16 37 H 0.10 1.06 5.87 -51.92 -0.30 0.76 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -28.07 309.50 -7.74 -35.80 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -5.72 Total: 21.24 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -3.36 Total: -26.91 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.85 Total: -52.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.17 Total: 17.59 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.07 -7.74 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379728275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.549 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds