Wall clock time and date at job start Mon Mar 30 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 C 1.52999 * 109.46761 * 120.00090 * 2 1 3 5 5 N 1.46500 * 115.55296 * 36.86848 * 4 2 1 6 6 C 1.39853 * 120.00218 * 65.35971 * 5 4 2 7 7 C 1.39594 * 119.83746 * 6.08014 * 6 5 4 8 8 C 1.38065 * 120.54870 * 179.72365 * 7 6 5 9 9 C 1.38735 * 120.21549 * 0.54628 * 8 7 6 10 10 N 1.38870 * 120.15928 * 179.74762 * 9 8 7 11 11 C 1.41556 * 119.67551 * 359.72853 * 9 8 7 12 12 C 1.41031 * 120.26608 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00235 * 331.91728 * 12 11 9 14 14 C 1.39885 * 119.99739 * 151.91772 * 12 11 9 15 15 N 1.30901 * 120.00113 * 159.98238 * 14 12 11 16 16 Si 1.86803 * 119.99932 * 339.98030 * 14 12 11 17 17 H 1.48504 * 109.46865 * 94.39678 * 16 14 12 18 18 H 1.48508 * 109.47152 * 214.39273 * 16 14 12 19 19 H 1.48497 * 109.47391 * 334.39551 * 16 14 12 20 20 C 1.38006 * 119.83694 * 186.35012 * 6 5 4 21 21 C 1.53005 * 117.49835 * 251.15312 * 4 2 1 22 22 C 1.52995 * 59.99911 * 252.51608 * 21 4 2 23 23 H 1.08998 * 109.47035 * 294.02217 * 1 2 3 24 24 H 1.09004 * 109.46553 * 174.01980 * 1 2 3 25 25 H 1.08998 * 109.46989 * 54.02338 * 1 2 3 26 26 H 1.08997 * 109.47165 * 239.99949 * 2 1 3 27 27 H 1.08997 * 109.47305 * 60.00035 * 3 2 1 28 28 H 1.08999 * 109.46777 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47572 * 299.99622 * 3 2 1 30 30 H 0.97006 * 119.99560 * 245.36026 * 5 4 2 31 31 H 1.08003 * 119.72932 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.89040 * 180.27660 * 8 7 6 33 33 H 0.96993 * 119.99577 * 185.25768 * 10 9 8 34 34 H 0.97001 * 120.00268 * 5.26593 * 10 9 8 35 35 H 0.96999 * 120.00128 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.11775 * 0.02620 * 20 6 5 37 37 H 1.09007 * 117.49638 * 0.02562 * 21 4 2 38 38 H 1.09000 * 117.49753 * 145.01870 * 21 4 2 39 39 H 1.09001 * 117.49965 * 252.50684 * 22 21 4 40 40 H 1.09000 * 117.50347 * 107.49472 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.2536 -1.8821 1.6739 6 6 1.1849 -3.0163 0.8586 7 6 1.9661 -3.0902 -0.2959 8 6 1.9140 -4.2053 -1.1083 9 6 1.0736 -5.2622 -0.7903 10 7 1.0182 -6.3811 -1.6110 11 6 0.2730 -5.1948 0.3752 12 6 -0.5862 -6.2618 0.7102 13 1 -0.9916 -6.8930 -0.0667 14 6 -0.9133 -6.5026 2.0488 15 7 -1.9780 -7.2036 2.3465 16 14 0.1691 -5.8238 3.4115 17 1 -0.3719 -4.5189 3.8697 18 1 0.1897 -6.7781 4.5491 19 1 1.5500 -5.6346 2.8990 20 6 0.3409 -4.0547 1.1964 21 6 2.6888 0.1311 2.3418 22 6 3.5537 -0.7763 1.4647 23 1 -0.3633 0.4183 0.9386 24 1 -0.3632 -1.0221 -0.1071 25 1 -0.3633 0.6037 -0.8316 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.7806 -1.8640 2.5206 31 1 2.6197 -2.2699 -0.5537 32 1 2.5264 -4.2531 -1.9967 33 1 0.3756 -7.0845 -1.4293 34 1 1.6223 -6.4591 -2.3660 35 1 -2.2050 -7.3703 3.2747 36 1 -0.2655 -3.9920 2.0878 37 1 2.7519 1.2058 2.1706 38 1 2.5304 -0.1717 3.3768 39 1 3.9645 -1.6761 1.9227 40 1 4.1863 -0.2988 0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379728275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:15 Heat of formation + Delta-G solvation = 25.164753 kcal Electronic energy + Delta-G solvation = -19909.134828 eV Core-core repulsion = 17109.008566 eV Total energy + Delta-G solvation = -2800.126262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60080 -39.20839 -35.74908 -35.28094 -33.90725 -32.58714 -32.03428 -28.33648 -27.46411 -26.58014 -24.33133 -23.31078 -23.04975 -21.56089 -19.91226 -18.84605 -18.02890 -17.53850 -17.05616 -16.56600 -16.41897 -15.93418 -15.32696 -14.94549 -14.62568 -14.15037 -14.07202 -13.73131 -13.54503 -13.40175 -13.18140 -13.01526 -12.63275 -12.48477 -12.40255 -12.23192 -12.08321 -11.86089 -11.80548 -11.68178 -11.37867 -10.98796 -10.89148 -10.56123 -9.42261 -9.35589 -8.79661 -7.49713 -6.12216 0.94087 1.21014 1.27282 1.51726 1.55342 2.18339 2.69367 2.76541 2.93767 3.69682 3.74185 3.74979 4.03762 4.08855 4.35600 4.39256 4.49551 4.51332 4.73764 4.77879 4.86037 4.94083 4.95270 5.01782 5.11289 5.14102 5.16161 5.29982 5.34379 5.40037 5.48387 5.53739 5.54151 5.73656 5.84191 6.03787 6.23420 6.35876 6.68874 6.91912 6.99171 7.15354 7.33413 7.59451 8.29146 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.006951 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.138256 B = 4027.364450 C = 4617.357860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.141 4.141 4 C 0.108 3.892 5 N -0.728 5.728 6 C 0.203 3.797 7 C -0.235 4.235 8 C -0.145 4.145 9 C 0.081 3.919 10 N -0.879 5.879 11 C 0.051 3.949 12 C -0.474 4.474 13 H 0.061 0.939 14 C 0.049 3.951 15 N -0.861 5.861 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.263 1.263 20 C -0.287 4.287 21 C -0.162 4.162 22 C -0.186 4.186 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.389 0.611 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.389 0.611 34 H 0.393 0.607 35 H 0.287 0.713 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 14.998 -1.744 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.199 4.199 4 C 0.019 3.981 5 N -0.359 5.359 6 C 0.103 3.897 7 C -0.258 4.258 8 C -0.169 4.169 9 C -0.022 4.022 10 N -0.422 5.422 11 C 0.045 3.955 12 C -0.505 4.505 13 H 0.079 0.921 14 C -0.164 4.164 15 N -0.489 5.489 16 Si 0.796 3.204 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.187 1.187 20 C -0.312 4.312 21 C -0.199 4.199 22 C -0.224 4.224 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.223 0.777 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.217 0.783 34 H 0.221 0.779 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.184 15.003 -1.648 17.668 hybrid contribution -0.413 -0.906 0.839 1.302 sum 8.772 14.097 -0.809 16.623 Atomic orbital electron populations 1.21610 0.95486 1.00581 1.01251 1.20842 0.95648 0.96355 0.95564 1.21932 1.01510 0.93833 1.02592 1.20604 0.90578 0.89455 0.97438 1.43830 1.56846 1.12851 1.22367 1.17304 0.94440 0.86336 0.91659 1.20051 1.07234 1.00415 0.98146 1.20205 1.02163 0.93560 1.01012 1.17931 0.99557 0.90157 0.94509 1.41767 1.44753 1.22136 1.33562 1.17287 0.92957 0.92837 0.92377 1.19084 1.24963 1.13200 0.93249 0.92062 1.26604 0.94645 0.93367 1.01747 1.69787 1.22387 1.34867 1.21868 0.85424 0.80739 0.77302 0.76890 1.19427 1.21694 1.18743 1.20293 1.09188 0.96629 1.05044 1.23489 1.01933 0.98990 0.95500 1.23385 0.93893 1.01566 1.03606 0.92973 0.95140 0.92124 0.91726 0.91479 0.91451 0.91768 0.77707 0.86324 0.86347 0.78292 0.77852 0.90330 0.89508 0.85249 0.89149 0.90561 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.67 71.98 0.62 -2.95 16 2 C -0.06 -1.56 2.64 -10.79 -0.03 -1.59 16 3 C -0.14 -2.37 7.82 71.98 0.56 -1.81 16 4 C 0.11 2.87 1.46 3.60 0.01 2.87 16 5 N -0.73 -25.21 4.76 -299.43 -1.43 -26.63 16 6 C 0.20 8.60 5.81 38.13 0.22 8.82 16 7 C -0.23 -9.39 8.76 22.56 0.20 -9.19 16 8 C -0.15 -5.96 9.87 22.35 0.22 -5.74 16 9 C 0.08 3.75 6.79 38.96 0.26 4.01 16 10 N -0.88 -35.01 8.97 -50.31 -0.45 -35.46 16 11 C 0.05 2.66 5.15 -21.18 -0.11 2.55 16 12 C -0.47 -26.79 8.99 23.35 0.21 -26.58 16 13 H 0.06 3.62 6.88 -2.91 -0.02 3.60 16 14 C 0.05 2.70 5.39 85.23 0.46 3.16 16 15 N -0.86 -48.85 13.93 21.82 0.30 -48.54 16 16 Si 0.97 46.13 24.54 68.60 1.68 47.82 16 17 H -0.27 -12.18 6.62 99.48 0.66 -11.52 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.26 -13.02 6.96 99.48 0.69 -12.33 16 20 C -0.29 -14.14 7.08 22.81 0.16 -13.98 16 21 C -0.16 -3.32 9.53 30.59 0.29 -3.03 16 22 C -0.19 -4.41 9.22 30.59 0.28 -4.13 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.04 7.17 -2.38 -0.02 1.02 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.75 6.59 -2.39 -0.02 1.73 16 27 H 0.07 1.01 6.85 -2.39 -0.02 0.99 16 28 H 0.07 0.98 7.02 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.39 13.24 8.84 -92.70 -0.82 12.42 16 31 H 0.12 4.18 5.23 -2.91 -0.02 4.16 16 32 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.39 16.14 7.07 -92.71 -0.66 15.49 16 34 H 0.39 12.65 8.84 -92.71 -0.82 11.83 16 35 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 36 H 0.09 4.39 4.60 -2.91 -0.01 4.38 16 37 H 0.13 1.99 5.87 -2.38 -0.01 1.97 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.11 2.21 7.44 -2.39 -0.02 2.19 16 Total: -1.00 -62.28 309.50 2.20 -60.08 By element: Atomic # 1 Polarization: 51.61 SS G_CDS: -1.27 Total: 50.33 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 3.36 Total: -47.59 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -1.57 Total: -110.64 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.68 Total: 47.82 kcal Total: -62.28 2.20 -60.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379728275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.245 kcal (2) G-P(sol) polarization free energy of solvation -62.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds