Wall clock time and date at job start Mon Mar 30 2020 07:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.52998 * 109.47380 * 185.09669 * 3 2 1 5 5 N 1.46502 * 115.56050 * 323.07437 * 4 3 2 6 6 C 1.39852 * 119.99841 * 279.41900 * 5 4 3 7 7 C 1.39596 * 119.84114 * 5.11160 * 6 5 4 8 8 C 1.38057 * 120.54968 * 179.71785 * 7 6 5 9 9 C 1.38727 * 120.22071 * 0.55009 * 8 7 6 10 10 N 1.38867 * 120.16804 * 179.74887 * 9 8 7 11 11 C 1.41563 * 119.67362 * 359.72635 * 9 8 7 12 12 C 1.41024 * 120.27009 * 179.97438 * 11 9 8 13 13 H 1.08007 * 120.00084 * 27.69810 * 12 11 9 14 14 C 1.39889 * 120.00304 * 207.69626 * 12 11 9 15 15 N 1.30905 * 119.99518 * 12.80650 * 14 12 11 16 16 Si 1.86799 * 120.00380 * 192.79746 * 14 12 11 17 17 H 1.48503 * 109.46931 * 60.00284 * 16 14 12 18 18 H 1.48497 * 109.47133 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47210 * 300.00717 * 16 14 12 20 20 C 1.38004 * 119.83806 * 185.37537 * 6 5 4 21 21 C 1.52994 * 117.49844 * 177.37951 * 4 3 2 22 22 C 1.52998 * 60.00384 * 252.51556 * 21 4 3 23 23 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46794 * 299.99499 * 1 2 3 25 25 H 1.08997 * 109.47231 * 59.99867 * 1 2 3 26 26 H 1.09008 * 109.46782 * 240.00112 * 2 1 3 27 27 H 1.09000 * 109.47294 * 120.00658 * 2 1 3 28 28 H 1.08998 * 109.46905 * 65.09696 * 3 2 1 29 29 H 1.09005 * 109.47122 * 305.10573 * 3 2 1 30 30 H 0.97004 * 119.99610 * 99.42731 * 5 4 3 31 31 H 1.08005 * 119.72444 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.88920 * 180.27409 * 8 7 6 33 33 H 0.97000 * 120.00193 * 185.90769 * 10 9 8 34 34 H 0.97003 * 119.99565 * 5.89635 * 10 9 8 35 35 H 0.97001 * 119.99539 * 184.98321 * 15 14 12 36 36 H 1.08000 * 120.11244 * 0.03045 * 20 6 5 37 37 H 1.09005 * 117.49947 * 145.02159 * 21 4 3 38 38 H 1.09002 * 117.50188 * 0.02562 * 21 4 3 39 39 H 1.08999 * 117.49997 * 107.48812 * 22 21 4 40 40 H 1.09002 * 117.49945 * 252.49035 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5647 1.4443 -0.1281 5 7 4.2598 0.3655 0.5785 6 6 4.4984 0.4698 1.9526 7 6 3.9805 1.5512 2.6675 8 6 4.2022 1.6655 4.0253 9 6 4.9540 0.7098 4.6930 10 7 5.1808 0.8287 6.0579 11 6 5.4886 -0.3877 3.9762 12 6 6.2552 -1.3663 4.6422 13 1 6.0881 -1.5613 5.6913 14 6 7.2319 -2.0844 3.9442 15 7 7.6114 -1.6878 2.7558 16 14 7.9946 -3.6089 4.7078 17 1 6.9333 -4.6129 4.9744 18 1 8.9959 -4.1827 3.7732 19 1 8.6613 -3.2430 5.9833 20 6 5.2495 -0.4940 2.5941 21 6 4.2651 2.8021 -0.2090 22 6 4.1615 1.9196 -1.4544 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7532 1.9292 0.9321 29 1 1.6040 1.9820 -0.8408 30 1 4.5545 -0.4210 0.0932 31 1 3.3980 2.3024 2.1548 32 1 3.7927 2.5042 4.5687 33 1 5.7763 0.2082 6.5065 34 1 4.7437 1.5324 6.5626 35 1 8.2347 -2.2245 2.2415 36 1 5.6526 -1.3267 2.0368 37 1 5.2431 2.8929 0.2637 38 1 3.6398 3.6941 -0.1704 39 1 3.4679 2.2309 -2.2356 40 1 5.0714 1.4299 -1.8014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379741315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:18 Heat of formation + Delta-G solvation = 35.391038 kcal Electronic energy + Delta-G solvation = -19571.723012 eV Core-core repulsion = 16772.040195 eV Total energy + Delta-G solvation = -2799.682817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.74980 -37.20616 -33.78897 -33.51876 -33.38219 -30.67237 -29.33646 -27.14388 -25.97571 -24.78775 -22.30396 -21.42807 -21.00395 -20.17333 -18.87637 -16.88193 -16.15933 -15.42903 -15.27614 -14.91337 -14.77082 -14.48026 -14.29911 -13.19647 -12.93714 -12.61989 -12.27099 -12.11266 -11.96955 -11.82111 -11.44850 -11.23222 -11.17783 -11.07586 -10.96506 -10.91901 -10.46843 -10.37243 -10.32802 -9.93285 -9.59025 -9.29170 -9.22245 -9.01672 -7.73659 -7.16443 -6.55352 -5.49889 -4.04138 2.95883 3.14942 3.17912 3.34444 3.50988 4.06503 4.07683 4.34499 4.86516 4.90820 5.20688 5.26464 5.40133 5.45983 5.56372 5.61335 5.86193 5.92007 5.93630 6.05320 6.07848 6.12491 6.21800 6.38408 6.44100 6.53286 6.55750 6.69150 6.76518 7.17654 7.22058 7.36475 7.51874 7.76630 7.93937 8.04464 8.17227 8.50469 8.80521 8.94948 8.99074 9.04480 9.29346 9.38030 10.43701 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.005841 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.185360 B = 4792.541758 C = 5118.939549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.089 4.089 4 C 0.129 3.871 5 N -0.728 5.728 6 C 0.178 3.822 7 C -0.242 4.242 8 C -0.156 4.156 9 C 0.085 3.915 10 N -0.889 5.889 11 C 0.092 3.908 12 C -0.464 4.464 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.806 5.806 16 Si 0.900 3.100 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.195 4.195 21 C -0.177 4.177 22 C -0.185 4.185 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.389 0.611 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.388 0.612 34 H 0.373 0.627 35 H 0.274 0.726 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 3.619 -5.389 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.128 4.128 4 C 0.039 3.961 5 N -0.362 5.362 6 C 0.081 3.919 7 C -0.265 4.265 8 C -0.180 4.180 9 C -0.015 4.015 10 N -0.432 5.432 11 C 0.087 3.913 12 C -0.496 4.496 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.434 5.434 16 Si 0.726 3.274 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.219 4.219 21 C -0.215 4.215 22 C -0.223 4.223 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.223 0.777 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.216 0.784 34 H 0.198 0.802 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.141 3.717 -5.643 9.831 hybrid contribution 0.701 -0.880 0.436 1.206 sum -6.440 2.837 -5.206 8.754 Atomic orbital electron populations 1.21784 0.96715 1.01132 1.01163 1.21345 0.94436 0.96810 1.02571 1.21427 0.92580 0.97324 1.01435 1.20214 0.90602 0.89765 0.95557 1.43635 1.66379 1.20294 1.05876 1.17456 0.96802 0.95784 0.81883 1.19704 1.12106 1.01247 0.93461 1.19746 1.05261 0.98802 0.94207 1.17885 1.03260 0.95894 0.84500 1.41811 1.56324 1.38432 1.06631 1.16960 0.92430 0.90357 0.91535 1.19095 1.15486 1.17934 0.97072 0.91304 1.25708 0.95483 0.97657 0.95027 1.69856 1.27255 1.34913 1.11359 0.86517 0.79029 0.82263 0.79632 1.19292 1.20688 1.19402 1.20523 1.05266 1.00875 0.95252 1.23238 1.03086 0.94353 1.00815 1.23305 1.02969 1.04599 0.91396 0.93143 0.92924 0.93415 0.92713 0.90880 0.91445 0.92340 0.77665 0.89266 0.89934 0.78365 0.80181 0.91516 0.86469 0.88374 0.89206 0.89015 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.11 -1.61 5.44 -26.73 -0.15 -1.75 16 3 C -0.09 -1.26 5.26 -26.73 -0.14 -1.40 16 4 C 0.13 2.03 1.43 -131.82 -0.19 1.84 16 5 N -0.73 -13.81 4.59 -46.00 -0.21 -14.02 16 6 C 0.18 4.08 6.58 -83.78 -0.55 3.53 16 7 C -0.24 -5.42 8.92 -39.14 -0.35 -5.77 16 8 C -0.16 -3.58 9.87 -39.47 -0.39 -3.97 16 9 C 0.09 2.08 6.79 -83.23 -0.56 1.52 16 10 N -0.89 -18.39 8.97 32.75 0.29 -18.10 16 11 C 0.09 2.46 5.57 -106.66 -0.59 1.86 16 12 C -0.46 -12.28 8.41 -37.91 -0.32 -12.60 16 13 H 0.07 1.74 6.83 -52.48 -0.36 1.38 16 14 C 0.08 1.94 5.22 -17.33 -0.09 1.85 16 15 N -0.81 -21.29 10.87 55.55 0.60 -20.69 16 16 Si 0.90 19.19 29.58 -169.99 -5.03 14.16 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 C -0.19 -5.03 8.48 -38.75 -0.33 -5.36 16 21 C -0.18 -2.69 8.88 -26.74 -0.24 -2.93 16 22 C -0.18 -2.52 10.10 -26.73 -0.27 -2.79 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.07 1.24 7.77 -51.93 -0.40 0.83 16 28 H 0.07 1.03 7.16 -51.93 -0.37 0.66 16 29 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 30 H 0.39 7.20 8.84 -40.82 -0.36 6.84 16 31 H 0.09 1.84 5.28 -52.48 -0.28 1.57 16 32 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.39 7.92 7.14 -40.82 -0.29 7.63 16 34 H 0.37 6.54 8.84 -40.82 -0.36 6.18 16 35 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.12 3.16 6.21 -52.49 -0.33 2.83 16 37 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -27.66 323.58 -9.36 -37.02 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -6.10 Total: 24.15 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.80 Total: -27.39 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.69 Total: -52.81 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.66 -9.36 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379741315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.410 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds