Wall clock time and date at job start Mon Mar 30 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.52998 * 109.47380 * 185.09669 * 3 2 1 5 5 N 1.46502 * 115.56050 * 323.07437 * 4 3 2 6 6 C 1.39852 * 119.99841 * 279.41900 * 5 4 3 7 7 C 1.39596 * 119.84114 * 5.11160 * 6 5 4 8 8 C 1.38057 * 120.54968 * 179.71785 * 7 6 5 9 9 C 1.38727 * 120.22071 * 0.55009 * 8 7 6 10 10 N 1.38867 * 120.16804 * 179.74887 * 9 8 7 11 11 C 1.41563 * 119.67362 * 359.72635 * 9 8 7 12 12 C 1.41024 * 120.27009 * 179.97438 * 11 9 8 13 13 H 1.08007 * 120.00084 * 27.69810 * 12 11 9 14 14 C 1.39889 * 120.00304 * 207.69626 * 12 11 9 15 15 N 1.30905 * 119.99518 * 12.80650 * 14 12 11 16 16 Si 1.86799 * 120.00380 * 192.79746 * 14 12 11 17 17 H 1.48503 * 109.46931 * 60.00284 * 16 14 12 18 18 H 1.48497 * 109.47133 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47210 * 300.00717 * 16 14 12 20 20 C 1.38004 * 119.83806 * 185.37537 * 6 5 4 21 21 C 1.52994 * 117.49844 * 177.37951 * 4 3 2 22 22 C 1.52998 * 60.00384 * 252.51556 * 21 4 3 23 23 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46794 * 299.99499 * 1 2 3 25 25 H 1.08997 * 109.47231 * 59.99867 * 1 2 3 26 26 H 1.09008 * 109.46782 * 240.00112 * 2 1 3 27 27 H 1.09000 * 109.47294 * 120.00658 * 2 1 3 28 28 H 1.08998 * 109.46905 * 65.09696 * 3 2 1 29 29 H 1.09005 * 109.47122 * 305.10573 * 3 2 1 30 30 H 0.97004 * 119.99610 * 99.42731 * 5 4 3 31 31 H 1.08005 * 119.72444 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.88920 * 180.27409 * 8 7 6 33 33 H 0.97000 * 120.00193 * 185.90769 * 10 9 8 34 34 H 0.97003 * 119.99565 * 5.89635 * 10 9 8 35 35 H 0.97001 * 119.99539 * 184.98321 * 15 14 12 36 36 H 1.08000 * 120.11244 * 0.03045 * 20 6 5 37 37 H 1.09005 * 117.49947 * 145.02159 * 21 4 3 38 38 H 1.09002 * 117.50188 * 0.02562 * 21 4 3 39 39 H 1.08999 * 117.49997 * 107.48812 * 22 21 4 40 40 H 1.09002 * 117.49945 * 252.49035 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5647 1.4443 -0.1281 5 7 4.2598 0.3655 0.5785 6 6 4.4984 0.4698 1.9526 7 6 3.9805 1.5512 2.6675 8 6 4.2022 1.6655 4.0253 9 6 4.9540 0.7098 4.6930 10 7 5.1808 0.8287 6.0579 11 6 5.4886 -0.3877 3.9762 12 6 6.2552 -1.3663 4.6422 13 1 6.0881 -1.5613 5.6913 14 6 7.2319 -2.0844 3.9442 15 7 7.6114 -1.6878 2.7558 16 14 7.9946 -3.6089 4.7078 17 1 6.9333 -4.6129 4.9744 18 1 8.9959 -4.1827 3.7732 19 1 8.6613 -3.2430 5.9833 20 6 5.2495 -0.4940 2.5941 21 6 4.2651 2.8021 -0.2090 22 6 4.1615 1.9196 -1.4544 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7532 1.9292 0.9321 29 1 1.6040 1.9820 -0.8408 30 1 4.5545 -0.4210 0.0932 31 1 3.3980 2.3024 2.1548 32 1 3.7927 2.5042 4.5687 33 1 5.7763 0.2082 6.5065 34 1 4.7437 1.5324 6.5626 35 1 8.2347 -2.2245 2.2415 36 1 5.6526 -1.3267 2.0368 37 1 5.2431 2.8929 0.2637 38 1 3.6398 3.6941 -0.1704 39 1 3.4679 2.2309 -2.2356 40 1 5.0714 1.4299 -1.8014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379741315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:17 Heat of formation + Delta-G solvation = 20.100062 kcal Electronic energy + Delta-G solvation = -19572.386079 eV Core-core repulsion = 16772.040195 eV Total energy + Delta-G solvation = -2800.345883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22446 -38.83268 -35.44688 -35.22653 -34.65198 -32.29657 -31.24148 -28.36373 -27.62250 -26.62504 -23.60632 -22.78693 -22.49042 -21.82560 -20.38406 -18.68003 -17.83331 -17.16224 -16.76859 -16.52449 -16.31924 -15.82947 -15.54751 -14.58557 -14.40135 -14.19183 -13.92095 -13.68821 -13.50952 -13.23804 -13.00336 -12.90217 -12.72160 -12.46576 -12.28530 -12.07189 -12.05805 -11.84277 -11.77209 -11.55828 -11.19464 -10.91565 -10.86403 -10.51927 -9.36606 -9.09245 -8.45727 -7.26035 -5.99516 1.15946 1.40566 1.49926 1.53720 1.68533 2.28584 2.78938 2.94887 2.99943 3.75477 3.79566 3.97862 4.07057 4.16168 4.33269 4.43915 4.55081 4.63405 4.79586 4.86259 4.89015 4.97360 5.02218 5.06116 5.15018 5.26754 5.31633 5.36032 5.39758 5.47193 5.49631 5.56726 5.69588 5.95445 6.11272 6.21860 6.33619 6.60424 7.01218 7.10787 7.18181 7.31549 7.50550 7.68795 8.54751 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.005841 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.185360 B = 4792.541758 C = 5118.939549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.082 4.082 4 C 0.105 3.895 5 N -0.726 5.726 6 C 0.181 3.819 7 C -0.240 4.240 8 C -0.162 4.162 9 C 0.069 3.931 10 N -0.880 5.880 11 C 0.056 3.944 12 C -0.492 4.492 13 H 0.071 0.929 14 C 0.032 3.968 15 N -0.840 5.840 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.220 4.220 21 C -0.183 4.183 22 C -0.159 4.159 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.388 0.612 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.389 0.611 34 H 0.390 0.610 35 H 0.277 0.723 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 4.486 -6.252 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.120 4.120 4 C 0.017 3.983 5 N -0.358 5.358 6 C 0.082 3.918 7 C -0.264 4.264 8 C -0.186 4.186 9 C -0.033 4.033 10 N -0.424 5.424 11 C 0.051 3.949 12 C -0.524 4.524 13 H 0.089 0.911 14 C -0.179 4.179 15 N -0.468 5.468 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.245 4.245 21 C -0.221 4.221 22 C -0.197 4.197 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.222 0.778 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.217 0.783 34 H 0.217 0.783 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.357 4.613 -6.509 11.554 hybrid contribution 1.012 -1.057 0.631 1.594 sum -7.345 3.556 -5.878 10.057 Atomic orbital electron populations 1.21744 0.94825 1.01714 1.02044 1.21280 0.96081 0.96587 1.00932 1.21396 0.91178 0.97382 1.02089 1.20583 0.91442 0.89077 0.97241 1.43674 1.66195 1.21277 1.04636 1.17502 0.95664 0.95006 0.83663 1.19962 1.11613 1.01231 0.93549 1.20094 1.04719 0.99143 0.94653 1.18049 1.03552 0.95758 0.85909 1.41679 1.56282 1.38897 1.05516 1.17351 0.93568 0.91613 0.92353 1.19345 1.16408 1.19179 0.97449 0.91098 1.26518 0.95645 1.00356 0.95394 1.69950 1.28017 1.36149 1.12700 0.85413 0.78067 0.78204 0.78869 1.19078 1.20093 1.18607 1.20488 1.06933 1.01517 0.95524 1.23236 1.01940 0.94995 1.01932 1.23386 1.02959 1.02344 0.91010 0.92817 0.93209 0.91294 0.92295 0.94613 0.92688 0.89217 0.77832 0.87282 0.87399 0.78308 0.78277 0.91267 0.88634 0.91295 0.86866 0.85634 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.91 71.98 0.71 -2.44 16 2 C -0.11 -2.98 5.44 30.59 0.17 -2.82 16 3 C -0.08 -2.12 5.26 30.59 0.16 -1.95 16 4 C 0.11 3.15 1.43 3.60 0.01 3.16 16 5 N -0.73 -27.79 4.59 -299.43 -1.37 -29.16 16 6 C 0.18 8.48 6.58 38.13 0.25 8.73 16 7 C -0.24 -10.69 8.92 22.55 0.20 -10.49 16 8 C -0.16 -7.35 9.87 22.34 0.22 -7.13 16 9 C 0.07 3.41 6.79 38.97 0.26 3.67 16 10 N -0.88 -36.23 8.97 -50.31 -0.45 -36.68 16 11 C 0.06 3.10 5.57 -21.18 -0.12 2.98 16 12 C -0.49 -26.86 8.41 23.35 0.20 -26.67 16 13 H 0.07 3.68 6.83 -2.91 -0.02 3.66 16 14 C 0.03 1.69 5.22 85.23 0.44 2.14 16 15 N -0.84 -45.99 10.87 21.82 0.24 -45.75 16 16 Si 0.97 40.14 29.58 68.60 2.03 42.17 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 20 C -0.22 -11.86 8.48 22.81 0.19 -11.67 16 21 C -0.18 -5.21 8.88 30.59 0.27 -4.94 16 22 C -0.16 -3.89 10.10 30.60 0.31 -3.58 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.03 1.21 7.77 -2.39 -0.02 1.19 16 28 H 0.05 1.56 7.16 -2.39 -0.02 1.55 16 29 H 0.09 1.79 7.92 -2.38 -0.02 1.77 16 30 H 0.39 14.76 8.84 -92.71 -0.82 13.94 16 31 H 0.11 4.36 5.28 -2.91 -0.02 4.34 16 32 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.39 15.95 7.14 -92.71 -0.66 15.29 16 34 H 0.39 13.25 8.84 -92.71 -0.82 12.43 16 35 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 36 H 0.10 5.47 6.21 -2.91 -0.02 5.45 16 37 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.13 2.27 8.06 -2.39 -0.02 2.25 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -61.54 323.58 2.49 -59.05 By element: Atomic # 1 Polarization: 62.63 SS G_CDS: -1.24 Total: 61.39 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 3.28 Total: -51.02 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -1.59 Total: -111.59 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -61.54 2.49 -59.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379741315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.154 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds