Wall clock time and date at job start Mon Mar 30 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47036 * 2 1 4 4 C 1.50693 * 109.86961 * 59.29890 * 3 2 1 5 5 C 1.38233 * 120.00207 * 271.00085 * 4 3 2 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 3 7 7 C 1.38235 * 120.00220 * 0.28719 * 6 5 4 8 8 C 1.50700 * 120.00255 * 179.97438 * 7 6 5 9 9 C 1.38237 * 119.99712 * 359.94731 * 7 6 5 10 10 C 1.38234 * 120.00033 * 0.02562 * 9 7 6 11 11 C 1.54108 * 109.87746 * 180.30716 * 3 2 1 12 12 C 1.54808 * 104.18671 * 117.54694 * 11 3 2 13 13 C 1.55004 * 102.09269 * 339.11494 * 12 11 3 14 14 H 1.08993 * 110.61917 * 278.52458 * 13 12 11 15 15 C 1.50703 * 110.61449 * 155.52696 * 13 12 11 16 16 H 1.07996 * 119.99889 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99650 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00290 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99786 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47061 * 90.00309 * 19 17 15 21 21 H 1.48497 * 109.47134 * 209.99886 * 19 17 15 22 22 H 1.48491 * 109.47086 * 330.00226 * 19 17 15 23 23 O 1.43743 * 110.00375 * 298.21229 * 3 2 1 24 24 H 1.09002 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47220 * 300.00201 * 1 2 3 26 26 H 1.08998 * 109.47470 * 59.99997 * 1 2 3 27 27 H 1.09003 * 109.46830 * 240.00032 * 2 1 3 28 28 H 1.09003 * 109.47120 * 120.00321 * 2 1 3 29 29 H 1.08002 * 120.00157 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00009 * 180.25939 * 6 5 4 31 31 H 1.08994 * 109.47517 * 89.99646 * 8 7 6 32 32 H 1.09005 * 109.47111 * 209.99797 * 8 7 6 33 33 H 1.09002 * 109.46493 * 329.99148 * 8 7 6 34 34 H 1.08001 * 119.99643 * 180.02562 * 9 7 6 35 35 H 1.08003 * 119.99512 * 180.02562 * 10 9 7 36 36 H 1.08998 * 110.48304 * 236.21791 * 11 3 2 37 37 H 1.09001 * 110.48624 * 358.86675 * 11 3 2 38 38 H 1.08996 * 110.91026 * 97.31896 * 12 11 3 39 39 H 1.09006 * 110.90405 * 220.88669 * 12 11 3 40 40 H 0.96995 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5285 2.1665 1.2186 5 6 0.3136 2.8244 1.1725 6 6 -0.1583 3.4837 2.2921 7 6 0.5876 3.4903 3.4560 8 6 0.0735 4.2097 4.6764 9 6 1.8048 2.8366 3.5006 10 6 2.2763 2.1767 2.3812 11 6 3.5810 1.4534 -0.0078 12 6 3.9487 2.1526 -1.3391 13 6 2.6525 1.9719 -2.1696 14 1 2.6207 0.9802 -2.6207 15 6 2.5461 3.0410 -3.2265 16 1 3.3191 3.7898 -3.3168 17 6 1.4621 3.0629 -4.0781 18 7 0.5206 2.1513 -3.9678 19 14 1.3299 4.3885 -5.3877 20 1 1.9853 3.9192 -6.6350 21 1 -0.1016 4.6755 -5.6587 22 1 2.0009 5.6242 -4.9107 23 8 1.6018 2.1189 -1.1902 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 -0.2693 2.8191 0.2633 30 1 -1.1094 3.9942 2.2574 31 1 -0.5228 3.5239 5.2781 32 1 0.9155 4.5724 5.2660 33 1 -0.5440 5.0532 4.3676 34 1 2.3873 2.8414 4.4100 35 1 3.2271 1.6656 2.4162 36 1 3.9626 2.0223 0.8400 37 1 3.9698 0.4352 0.0086 38 1 4.1631 3.2090 -1.1775 39 1 4.7915 1.6556 -1.8196 40 1 -0.2422 2.1670 -4.5667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379783415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:43 Heat of formation + Delta-G solvation = -36.914042 kcal Electronic energy + Delta-G solvation = -20116.322318 eV Core-core repulsion = 17281.211367 eV Total energy + Delta-G solvation = -2835.110952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76443 -37.83508 -33.82045 -32.22619 -31.60406 -31.17824 -30.20499 -28.24794 -26.30874 -24.45996 -22.45858 -22.25095 -21.21653 -19.86736 -18.99779 -16.80300 -15.88477 -15.32751 -14.76827 -14.59336 -14.40870 -14.16513 -13.57832 -13.44617 -13.32545 -12.99582 -12.65187 -12.26973 -12.08000 -11.89234 -11.58498 -11.56736 -11.21970 -11.05284 -10.88259 -10.61635 -10.50616 -10.46932 -10.15236 -10.10906 -9.84650 -9.57662 -9.05838 -8.59927 -8.48662 -8.09671 -7.95550 -6.02219 -4.13839 1.73166 1.82844 3.30579 3.37604 3.41392 4.15195 4.42296 4.87706 5.06780 5.16591 5.28797 5.37931 5.41991 5.48168 5.62898 5.65601 5.66450 5.83007 5.85538 5.89967 6.00985 6.05912 6.12553 6.29803 6.37724 6.42349 6.49298 6.50214 6.56784 6.68355 6.73543 6.79759 6.83387 6.92919 7.01330 7.07702 7.19280 7.44153 7.54995 7.89301 8.25361 8.62078 8.98422 9.56526 11.05528 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.006311 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.023463 B = 4435.927747 C = 4772.814761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.132 3.868 4 C -0.059 4.059 5 C -0.083 4.083 6 C -0.128 4.128 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.210 3.790 14 H 0.028 0.972 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.078 3.922 18 N -0.864 5.864 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.339 6.339 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -1.156 13.286 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.091 3.909 4 C -0.059 4.059 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.102 4.102 8 C -0.166 4.166 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.188 4.188 12 C -0.185 4.185 13 C 0.155 3.845 14 H 0.046 0.954 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.500 5.500 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.258 6.258 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.502 -1.113 13.184 13.240 hybrid contribution 0.087 0.553 -0.687 0.886 sum 0.589 -0.560 12.497 12.523 Atomic orbital electron populations 1.21727 0.95594 1.00245 1.02810 1.21851 0.97056 0.96012 1.00878 1.20699 0.92061 0.91074 0.87033 1.19936 0.94511 0.97068 0.94375 1.21153 0.95757 0.95090 0.98058 1.21020 0.99757 1.00838 0.92941 1.19804 0.95339 0.99497 0.95561 1.20726 1.00940 0.99476 0.95426 1.20845 0.96154 0.99607 0.98072 1.21018 0.99621 1.00245 0.92811 1.23139 0.95708 1.00500 0.99446 1.23196 1.00662 0.99849 0.94812 1.20650 0.80603 0.96871 0.86336 0.95400 1.20992 1.07624 1.14327 1.13452 0.91938 1.25056 0.95407 0.95428 0.96855 1.70020 1.09705 1.33337 1.36958 0.86631 0.77329 0.82396 0.81828 1.20552 1.21101 1.19770 1.89264 1.43163 1.73488 1.19882 0.94175 0.93305 0.90747 0.91608 0.92960 0.85015 0.86643 0.91742 0.92039 0.91912 0.86803 0.86200 0.91436 0.91902 0.91858 0.92348 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.14 37.16 0.34 -2.33 16 2 C -0.12 -2.21 4.94 -26.73 -0.13 -2.34 16 3 C 0.13 2.64 0.69 -91.20 -0.06 2.58 16 4 C -0.06 -1.08 4.31 -104.63 -0.45 -1.53 16 5 C -0.08 -1.53 7.51 -39.58 -0.30 -1.83 16 6 C -0.13 -2.01 9.70 -39.58 -0.38 -2.40 16 7 C -0.10 -1.45 5.88 -104.62 -0.62 -2.06 16 8 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 9 C -0.13 -1.83 9.70 -39.58 -0.38 -2.22 16 10 C -0.12 -1.89 8.74 -39.58 -0.35 -2.23 16 11 C -0.15 -2.75 5.76 -25.20 -0.15 -2.89 16 12 C -0.15 -3.12 6.55 -24.72 -0.16 -3.28 16 13 C 0.21 5.39 3.04 -26.82 -0.08 5.31 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.53 -14.77 8.81 -34.44 -0.30 -15.07 16 16 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 17 C 0.08 2.20 5.44 -17.82 -0.10 2.10 16 18 N -0.86 -25.19 13.13 55.43 0.73 -24.47 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 O -0.34 -8.48 8.86 -35.23 -0.31 -8.79 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 26 H 0.07 1.58 7.76 -51.93 -0.40 1.18 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.13 2.70 7.49 -52.49 -0.39 2.31 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.69 6.42 -52.48 -0.34 1.36 16 36 H 0.07 1.12 5.74 -51.93 -0.30 0.83 16 37 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 38 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -29.75 319.58 -8.88 -38.63 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.33 Total: 2.43 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.76 Total: -28.99 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.73 Total: -24.47 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.31 Total: -8.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.75 -8.88 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.718 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds