Wall clock time and date at job start Mon Mar 30 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47036 * 2 1 4 4 C 1.50693 * 109.86961 * 59.29890 * 3 2 1 5 5 C 1.38233 * 120.00207 * 271.00085 * 4 3 2 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 3 7 7 C 1.38235 * 120.00220 * 0.28719 * 6 5 4 8 8 C 1.50700 * 120.00255 * 179.97438 * 7 6 5 9 9 C 1.38237 * 119.99712 * 359.94731 * 7 6 5 10 10 C 1.38234 * 120.00033 * 0.02562 * 9 7 6 11 11 C 1.54108 * 109.87746 * 180.30716 * 3 2 1 12 12 C 1.54808 * 104.18671 * 117.54694 * 11 3 2 13 13 C 1.55004 * 102.09269 * 339.11494 * 12 11 3 14 14 H 1.08993 * 110.61917 * 278.52458 * 13 12 11 15 15 C 1.50703 * 110.61449 * 155.52696 * 13 12 11 16 16 H 1.07996 * 119.99889 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99650 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00290 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99786 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47061 * 90.00309 * 19 17 15 21 21 H 1.48497 * 109.47134 * 209.99886 * 19 17 15 22 22 H 1.48491 * 109.47086 * 330.00226 * 19 17 15 23 23 O 1.43743 * 110.00375 * 298.21229 * 3 2 1 24 24 H 1.09002 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47220 * 300.00201 * 1 2 3 26 26 H 1.08998 * 109.47470 * 59.99997 * 1 2 3 27 27 H 1.09003 * 109.46830 * 240.00032 * 2 1 3 28 28 H 1.09003 * 109.47120 * 120.00321 * 2 1 3 29 29 H 1.08002 * 120.00157 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00009 * 180.25939 * 6 5 4 31 31 H 1.08994 * 109.47517 * 89.99646 * 8 7 6 32 32 H 1.09005 * 109.47111 * 209.99797 * 8 7 6 33 33 H 1.09002 * 109.46493 * 329.99148 * 8 7 6 34 34 H 1.08001 * 119.99643 * 180.02562 * 9 7 6 35 35 H 1.08003 * 119.99512 * 180.02562 * 10 9 7 36 36 H 1.08998 * 110.48304 * 236.21791 * 11 3 2 37 37 H 1.09001 * 110.48624 * 358.86675 * 11 3 2 38 38 H 1.08996 * 110.91026 * 97.31896 * 12 11 3 39 39 H 1.09006 * 110.90405 * 220.88669 * 12 11 3 40 40 H 0.96995 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5285 2.1665 1.2186 5 6 0.3136 2.8244 1.1725 6 6 -0.1583 3.4837 2.2921 7 6 0.5876 3.4903 3.4560 8 6 0.0735 4.2097 4.6764 9 6 1.8048 2.8366 3.5006 10 6 2.2763 2.1767 2.3812 11 6 3.5810 1.4534 -0.0078 12 6 3.9487 2.1526 -1.3391 13 6 2.6525 1.9719 -2.1696 14 1 2.6207 0.9802 -2.6207 15 6 2.5461 3.0410 -3.2265 16 1 3.3191 3.7898 -3.3168 17 6 1.4621 3.0629 -4.0781 18 7 0.5206 2.1513 -3.9678 19 14 1.3299 4.3885 -5.3877 20 1 1.9853 3.9192 -6.6350 21 1 -0.1016 4.6755 -5.6587 22 1 2.0009 5.6242 -4.9107 23 8 1.6018 2.1189 -1.1902 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 -0.2693 2.8191 0.2633 30 1 -1.1094 3.9942 2.2574 31 1 -0.5228 3.5239 5.2781 32 1 0.9155 4.5724 5.2660 33 1 -0.5440 5.0532 4.3676 34 1 2.3873 2.8414 4.4100 35 1 3.2271 1.6656 2.4162 36 1 3.9626 2.0223 0.8400 37 1 3.9698 0.4352 0.0086 38 1 4.1631 3.2090 -1.1775 39 1 4.7915 1.6556 -1.8196 40 1 -0.2422 2.1670 -4.5667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379783415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:43 Heat of formation + Delta-G solvation = -52.357449 kcal Electronic energy + Delta-G solvation = -20116.991995 eV Core-core repulsion = 17281.211367 eV Total energy + Delta-G solvation = -2835.780628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20410 -39.28389 -35.48213 -34.12553 -33.02556 -32.64279 -31.56684 -29.87407 -27.77834 -26.07546 -24.05436 -23.65483 -22.49349 -21.59574 -20.44083 -18.75470 -17.48626 -16.97720 -16.41696 -16.03438 -15.84280 -15.58185 -15.08581 -14.90116 -14.45264 -14.39495 -14.12772 -13.89533 -13.73062 -13.28661 -12.96018 -12.84688 -12.71081 -12.63400 -12.50161 -12.32241 -12.17055 -11.94282 -11.86884 -11.67622 -11.33117 -11.23045 -10.96588 -10.70430 -9.89893 -9.70552 -9.27916 -8.16516 -6.36004 0.50995 0.59299 1.38062 1.39862 1.50306 2.39213 2.91130 3.04096 3.56137 3.80082 3.98174 4.06084 4.10114 4.17183 4.24783 4.31708 4.46079 4.51578 4.57120 4.66630 4.73290 4.80652 4.89656 4.93206 4.96054 4.98176 5.04575 5.06335 5.13451 5.23245 5.26953 5.30168 5.42085 5.45269 5.54824 5.67497 5.75181 5.77328 5.87756 6.18716 6.22397 6.63081 7.00680 7.38870 8.91422 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.006311 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.023463 B = 4435.927747 C = 4772.814761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.121 3.879 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.135 4.135 7 C -0.098 4.098 8 C -0.107 4.107 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.204 3.796 14 H -0.005 1.005 15 C -0.551 4.551 16 H 0.061 0.939 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.268 1.268 23 O -0.370 6.370 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -0.615 16.089 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.081 3.919 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.153 4.153 7 C -0.098 4.098 8 C -0.164 4.164 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.177 4.177 12 C -0.179 4.179 13 C 0.148 3.852 14 H 0.012 0.988 15 C -0.588 4.588 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.192 1.192 23 O -0.290 6.290 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.687 -0.573 15.994 16.093 hybrid contribution -0.311 0.376 -1.462 1.541 sum 1.377 -0.197 14.532 14.599 Atomic orbital electron populations 1.21601 0.95925 1.00933 1.00911 1.21848 0.96785 0.95488 1.01452 1.20989 0.93377 0.91604 0.85967 1.19870 0.95100 0.98360 0.94795 1.20967 0.96386 0.97519 0.97833 1.21198 1.00645 1.00608 0.92883 1.20248 0.94988 0.98583 0.95947 1.20796 1.01940 0.99630 0.94009 1.21285 0.96132 0.97972 0.98719 1.21242 1.00022 1.00303 0.92135 1.23135 0.94359 1.01856 0.98391 1.23073 0.98897 1.00029 0.95888 1.20474 0.83223 0.94398 0.87067 0.98762 1.21404 1.07782 1.14823 1.14825 0.92077 1.25903 0.95016 0.97618 0.99123 1.70162 1.10267 1.35185 1.38037 0.85572 0.77318 0.79550 0.79264 1.19257 1.20895 1.19236 1.89187 1.43652 1.74487 1.21627 0.92037 0.92655 0.95154 0.93408 0.89638 0.88894 0.85458 0.90156 0.90133 0.91366 0.83162 0.84044 0.89110 0.89590 0.92613 0.90759 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.14 71.98 0.66 -4.49 16 2 C -0.12 -4.36 4.94 30.59 0.15 -4.21 16 3 C 0.12 4.87 0.69 -11.17 -0.01 4.87 16 4 C -0.08 -2.95 4.31 -19.87 -0.09 -3.04 16 5 C -0.11 -4.16 7.51 22.27 0.17 -3.99 16 6 C -0.14 -4.18 9.70 22.27 0.22 -3.96 16 7 C -0.10 -2.47 5.88 -19.87 -0.12 -2.59 16 8 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 9 C -0.12 -3.01 9.70 22.27 0.22 -2.79 16 10 C -0.12 -3.42 8.74 22.27 0.19 -3.23 16 11 C -0.14 -4.92 5.76 31.59 0.18 -4.74 16 12 C -0.14 -5.98 6.55 31.90 0.21 -5.77 16 13 C 0.20 10.92 3.04 30.53 0.09 11.02 16 14 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 15 C -0.55 -32.12 8.81 25.60 0.23 -31.89 16 16 H 0.06 3.46 7.77 -2.91 -0.02 3.44 16 17 C 0.03 1.49 5.44 84.65 0.46 1.95 16 18 N -0.90 -55.12 13.13 21.45 0.28 -54.84 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 O -0.37 -19.52 8.86 -148.98 -1.32 -20.84 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.98 6.16 -2.39 -0.01 1.97 16 26 H 0.03 1.38 7.76 -2.39 -0.02 1.36 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.09 4.18 7.49 -2.91 -0.02 4.16 16 30 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.11 8.09 -2.38 -0.02 1.09 16 33 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.14 3.38 6.42 -2.91 -0.02 3.36 16 36 H 0.09 2.75 5.74 -2.39 -0.01 2.74 16 37 H 0.09 2.60 7.70 -2.39 -0.02 2.58 16 38 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 39 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.45 319.58 5.26 -63.19 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.00 Total: 19.33 kcal Atomic # 6 Polarization: -57.28 SS G_CDS: 3.28 Total: -54.00 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.32 Total: -20.84 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.45 5.26 -63.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.829 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds