Wall clock time and date at job start Mon Mar 30 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 C 1.50698 * 109.82174 * 59.30366 * 3 2 1 5 5 C 1.38236 * 119.99817 * 270.88516 * 4 3 2 6 6 C 1.38232 * 119.99671 * 180.02562 * 5 4 3 7 7 C 1.38236 * 120.00339 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00062 * 179.97438 * 7 6 5 9 9 C 1.38237 * 119.99938 * 0.25202 * 7 6 5 10 10 C 1.38232 * 119.99568 * 359.49524 * 9 7 6 11 11 C 1.54389 * 109.82919 * 180.18649 * 3 2 1 12 12 C 1.55309 * 102.24882 * 98.25142 * 11 3 2 13 13 C 1.54947 * 100.94327 * 34.13244 * 12 11 3 14 14 H 1.08992 * 110.31002 * 82.57098 * 13 12 11 15 15 C 1.50702 * 110.30542 * 204.63890 * 13 12 11 16 16 H 1.08000 * 120.00690 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99573 * 180.02562 * 15 13 12 18 18 N 1.31515 * 120.00227 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99811 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47325 * 59.99963 * 19 17 15 21 21 H 1.48504 * 109.46865 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47049 * 299.99342 * 19 17 15 23 23 O 1.43233 * 109.90706 * 298.36626 * 3 2 1 24 24 H 1.08997 * 109.46495 * 299.99817 * 1 2 3 25 25 H 1.09000 * 109.46994 * 59.99547 * 1 2 3 26 26 H 1.08991 * 109.47038 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47098 * 240.00329 * 2 1 3 28 28 H 1.08994 * 109.47401 * 120.00299 * 2 1 3 29 29 H 1.07994 * 119.99948 * 359.97438 * 5 4 3 30 30 H 1.08008 * 120.00057 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 89.99927 * 8 7 6 32 32 H 1.09001 * 109.46980 * 330.00027 * 8 7 6 33 33 H 1.09004 * 109.47113 * 210.00008 * 8 7 6 34 34 H 1.07998 * 120.00100 * 179.72470 * 9 7 6 35 35 H 1.08000 * 120.00109 * 180.23108 * 10 9 7 36 36 H 1.09001 * 110.84531 * 216.43628 * 11 3 2 37 37 H 1.08998 * 110.84550 * 340.06241 * 11 3 2 38 38 H 1.09000 * 111.12446 * 152.05196 * 12 11 3 39 39 H 1.09001 * 111.12264 * 276.16646 * 12 11 3 40 40 H 0.97002 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5281 2.1655 1.2191 5 6 0.3140 2.8249 1.1725 6 6 -0.1553 3.4886 2.2905 7 6 0.5896 3.4933 3.4550 8 6 0.0781 4.2174 4.6737 9 6 1.8063 2.8388 3.4999 10 6 2.2732 2.1707 2.3834 11 6 3.5839 1.4521 -0.0047 12 6 3.9074 1.6736 -1.5075 13 6 2.7322 2.5911 -1.9293 14 1 2.9493 3.6273 -1.6699 15 6 2.4760 2.4659 -3.4091 16 1 3.0814 1.8014 -4.0077 17 6 1.4686 3.1997 -3.9987 18 7 0.7310 4.0085 -3.2697 19 14 1.1504 3.0439 -5.8328 20 1 0.8064 1.6364 -6.1578 21 1 0.0229 3.9309 -6.2167 22 1 2.3694 3.4413 -6.5822 23 8 1.5994 2.1156 -1.1850 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 -0.2673 2.8222 0.2623 30 1 -1.1037 4.0042 2.2541 31 1 -0.5222 3.5356 5.2762 32 1 -0.5349 5.0635 4.3631 33 1 0.9215 4.5768 5.2635 34 1 2.3904 2.8462 4.4083 35 1 3.2221 1.6562 2.4195 36 1 3.9685 2.2734 0.6000 37 1 3.9788 0.4966 0.3404 38 1 4.8650 2.1790 -1.6328 39 1 3.8882 0.7321 -2.0564 40 1 0.0220 4.5244 -3.6845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379783416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:46 Heat of formation + Delta-G solvation = -38.467149 kcal Electronic energy + Delta-G solvation = -20135.403682 eV Core-core repulsion = 17300.225382 eV Total energy + Delta-G solvation = -2835.178299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72284 -37.78929 -33.86359 -32.19103 -31.56600 -31.22071 -30.18375 -28.21768 -26.30147 -24.41174 -22.41165 -22.08528 -21.19979 -20.11293 -19.00953 -16.51037 -16.15481 -15.11675 -14.75499 -14.67814 -14.46941 -14.15386 -13.62762 -13.48546 -12.99734 -12.90491 -12.56647 -12.35409 -12.13626 -11.75545 -11.71910 -11.52420 -11.22487 -10.95011 -10.87858 -10.75063 -10.56570 -10.48733 -10.25973 -10.07312 -9.84970 -9.60162 -9.06120 -8.55536 -8.43020 -8.01656 -7.89511 -5.98710 -4.11561 1.78259 1.88765 3.33059 3.37755 3.40051 4.20629 4.43698 4.87552 5.11742 5.19904 5.30738 5.39535 5.44349 5.49843 5.56192 5.63108 5.68877 5.81892 5.92080 5.93539 6.00831 6.02968 6.18587 6.25889 6.33643 6.42731 6.48742 6.53421 6.55355 6.64220 6.73869 6.78118 6.83282 6.94962 6.98661 7.06658 7.23678 7.50401 7.63105 7.90995 8.29406 8.67637 9.05404 9.59086 11.08366 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.006258 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448311 B = 4473.210961 C = 4861.198653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.137 3.863 4 C -0.074 4.074 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.131 4.131 10 C -0.118 4.118 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.212 3.788 14 H 0.027 0.973 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.079 3.921 18 N -0.862 5.862 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.340 6.340 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -3.533 12.375 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.096 3.904 4 C -0.074 4.074 5 C -0.096 4.096 6 C -0.146 4.146 7 C -0.102 4.102 8 C -0.165 4.165 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.185 4.185 12 C -0.185 4.185 13 C 0.157 3.843 14 H 0.045 0.955 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.126 4.126 18 N -0.499 5.499 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.259 6.259 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.341 -3.361 12.313 12.768 hybrid contribution 0.024 -0.043 -0.909 0.911 sum 0.365 -3.404 11.404 11.907 Atomic orbital electron populations 1.21726 0.95771 1.00167 1.02719 1.21696 0.96789 0.95422 1.00931 1.20693 0.92006 0.91299 0.86421 1.20321 0.94684 0.97484 0.94907 1.21169 0.95714 0.94740 0.98001 1.21026 0.99840 1.00763 0.92960 1.19800 0.95346 0.99511 0.95559 1.20725 1.00923 0.99442 0.95459 1.20836 0.96184 0.99719 0.98143 1.20984 0.99636 1.00147 0.92888 1.23218 0.95581 1.01070 0.98594 1.23321 1.00500 1.01270 0.93365 1.20501 0.80693 0.92028 0.91119 0.95495 1.21061 1.18217 1.26279 0.91402 0.92112 1.25050 0.95451 0.94360 0.97779 1.70025 1.19325 1.25162 1.35343 0.86726 0.77814 0.78141 0.85654 1.20115 1.21231 1.20180 1.88829 1.32822 1.73159 1.31135 0.93066 0.91267 0.94109 0.91503 0.92787 0.84866 0.86697 0.91795 0.91914 0.92080 0.86918 0.86503 0.91400 0.91732 0.92088 0.91659 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.14 37.16 0.34 -2.22 16 2 C -0.11 -1.97 5.06 -26.73 -0.14 -2.10 16 3 C 0.14 2.71 0.77 -91.04 -0.07 2.64 16 4 C -0.07 -1.37 4.26 -104.62 -0.45 -1.82 16 5 C -0.08 -1.49 7.51 -39.58 -0.30 -1.79 16 6 C -0.13 -2.10 9.70 -39.58 -0.38 -2.48 16 7 C -0.10 -1.50 5.88 -104.62 -0.62 -2.12 16 8 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 9 C -0.13 -1.92 9.70 -39.58 -0.38 -2.30 16 10 C -0.12 -1.91 8.75 -39.58 -0.35 -2.26 16 11 C -0.15 -2.66 5.04 -24.78 -0.12 -2.78 16 12 C -0.15 -3.05 6.53 -24.48 -0.16 -3.21 16 13 C 0.21 5.44 3.22 -26.85 -0.09 5.36 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.53 -14.84 8.79 -34.44 -0.30 -15.14 16 16 H 0.06 1.65 7.76 -52.49 -0.41 1.24 16 17 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 18 N -0.86 -25.38 13.05 55.43 0.72 -24.65 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 O -0.34 -8.48 8.53 -35.23 -0.30 -8.78 16 24 H 0.05 0.87 6.16 -51.93 -0.32 0.55 16 25 H 0.07 1.39 7.75 -51.93 -0.40 0.98 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.13 2.83 7.49 -52.49 -0.39 2.44 16 30 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.67 6.81 -52.49 -0.36 1.32 16 36 H 0.07 1.19 6.85 -51.93 -0.36 0.83 16 37 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -29.82 320.36 -8.94 -38.75 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.42 Total: 2.46 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -2.75 Total: -28.93 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.72 Total: -24.65 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.30 Total: -8.78 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.82 -8.94 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.283 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds