Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 C 1.50698 * 109.82174 * 59.30366 * 3 2 1 5 5 C 1.38236 * 119.99817 * 270.88516 * 4 3 2 6 6 C 1.38232 * 119.99671 * 180.02562 * 5 4 3 7 7 C 1.38236 * 120.00339 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00062 * 179.97438 * 7 6 5 9 9 C 1.38237 * 119.99938 * 0.25202 * 7 6 5 10 10 C 1.38232 * 119.99568 * 359.49524 * 9 7 6 11 11 C 1.54389 * 109.82919 * 180.18649 * 3 2 1 12 12 C 1.55309 * 102.24882 * 98.25142 * 11 3 2 13 13 C 1.54947 * 100.94327 * 34.13244 * 12 11 3 14 14 H 1.08992 * 110.31002 * 82.57098 * 13 12 11 15 15 C 1.50702 * 110.30542 * 204.63890 * 13 12 11 16 16 H 1.08000 * 120.00690 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99573 * 180.02562 * 15 13 12 18 18 N 1.31515 * 120.00227 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99811 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47325 * 59.99963 * 19 17 15 21 21 H 1.48504 * 109.46865 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47049 * 299.99342 * 19 17 15 23 23 O 1.43233 * 109.90706 * 298.36626 * 3 2 1 24 24 H 1.08997 * 109.46495 * 299.99817 * 1 2 3 25 25 H 1.09000 * 109.46994 * 59.99547 * 1 2 3 26 26 H 1.08991 * 109.47038 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47098 * 240.00329 * 2 1 3 28 28 H 1.08994 * 109.47401 * 120.00299 * 2 1 3 29 29 H 1.07994 * 119.99948 * 359.97438 * 5 4 3 30 30 H 1.08008 * 120.00057 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 89.99927 * 8 7 6 32 32 H 1.09001 * 109.46980 * 330.00027 * 8 7 6 33 33 H 1.09004 * 109.47113 * 210.00008 * 8 7 6 34 34 H 1.07998 * 120.00100 * 179.72470 * 9 7 6 35 35 H 1.08000 * 120.00109 * 180.23108 * 10 9 7 36 36 H 1.09001 * 110.84531 * 216.43628 * 11 3 2 37 37 H 1.08998 * 110.84550 * 340.06241 * 11 3 2 38 38 H 1.09000 * 111.12446 * 152.05196 * 12 11 3 39 39 H 1.09001 * 111.12264 * 276.16646 * 12 11 3 40 40 H 0.97002 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5281 2.1655 1.2191 5 6 0.3140 2.8249 1.1725 6 6 -0.1553 3.4886 2.2905 7 6 0.5896 3.4933 3.4550 8 6 0.0781 4.2174 4.6737 9 6 1.8063 2.8388 3.4999 10 6 2.2732 2.1707 2.3834 11 6 3.5839 1.4521 -0.0047 12 6 3.9074 1.6736 -1.5075 13 6 2.7322 2.5911 -1.9293 14 1 2.9493 3.6273 -1.6699 15 6 2.4760 2.4659 -3.4091 16 1 3.0814 1.8014 -4.0077 17 6 1.4686 3.1997 -3.9987 18 7 0.7310 4.0085 -3.2697 19 14 1.1504 3.0439 -5.8328 20 1 0.8064 1.6364 -6.1578 21 1 0.0229 3.9309 -6.2167 22 1 2.3694 3.4413 -6.5822 23 8 1.5994 2.1156 -1.1850 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 -0.2673 2.8222 0.2623 30 1 -1.1037 4.0042 2.2541 31 1 -0.5222 3.5356 5.2762 32 1 -0.5349 5.0635 4.3631 33 1 0.9215 4.5768 5.2635 34 1 2.3904 2.8462 4.4083 35 1 3.2221 1.6562 2.4195 36 1 3.9685 2.2734 0.6000 37 1 3.9788 0.4966 0.3404 38 1 4.8650 2.1790 -1.6328 39 1 3.8882 0.7321 -2.0564 40 1 0.0220 4.5244 -3.6845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379783416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = -53.981196 kcal Electronic energy + Delta-G solvation = -20136.076421 eV Core-core repulsion = 17300.225382 eV Total energy + Delta-G solvation = -2835.851039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17549 -39.25354 -35.52022 -34.10969 -32.93130 -32.72772 -31.56305 -29.84144 -27.77574 -26.04975 -23.85871 -23.60138 -22.52240 -21.82707 -20.45650 -18.60609 -17.59836 -16.72318 -16.62419 -15.98646 -15.89487 -15.64517 -15.12009 -14.59287 -14.39850 -14.31631 -14.16957 -13.96595 -13.65337 -13.35419 -12.93006 -12.78886 -12.70804 -12.62618 -12.41737 -12.39734 -12.28567 -12.02156 -11.86572 -11.69652 -11.31424 -11.21479 -10.92936 -10.68175 -9.80903 -9.69457 -9.27154 -8.13230 -6.33854 0.52271 0.60643 1.39103 1.41992 1.49303 2.40544 2.92670 3.04957 3.55143 3.79986 3.99379 4.02359 4.09795 4.14874 4.26535 4.34903 4.49781 4.54533 4.58383 4.65642 4.72768 4.85195 4.88441 4.93655 4.96686 4.98530 5.02197 5.05996 5.13994 5.26157 5.27250 5.30878 5.42977 5.47250 5.58430 5.67955 5.76549 5.78846 5.90368 6.20994 6.24043 6.65527 7.12775 7.42314 8.94038 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.006258 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448311 B = 4473.210961 C = 4861.198653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.123 3.877 4 C -0.095 4.095 5 C -0.105 4.105 6 C -0.139 4.139 7 C -0.099 4.099 8 C -0.107 4.107 9 C -0.126 4.126 10 C -0.119 4.119 11 C -0.135 4.135 12 C -0.139 4.139 13 C 0.205 3.795 14 H -0.017 1.017 15 C -0.553 4.553 16 H 0.064 0.936 17 C 0.025 3.975 18 N -0.901 5.901 19 Si 0.958 3.042 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.264 1.264 23 O -0.370 6.370 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -4.664 14.545 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.083 3.917 4 C -0.095 4.095 5 C -0.124 4.124 6 C -0.157 4.157 7 C -0.099 4.099 8 C -0.163 4.163 9 C -0.144 4.144 10 C -0.137 4.137 11 C -0.172 4.172 12 C -0.177 4.177 13 C 0.149 3.851 14 H 0.001 0.999 15 C -0.590 4.590 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.539 5.539 19 Si 0.782 3.218 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.189 1.189 23 O -0.290 6.290 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.576 -4.504 14.487 15.253 hybrid contribution -0.380 0.333 -1.477 1.561 sum 1.196 -4.171 13.011 13.715 Atomic orbital electron populations 1.21629 0.96107 1.01076 1.00798 1.21704 0.96531 0.94338 1.01973 1.21036 0.93433 0.92078 0.85173 1.20275 0.95051 0.98591 0.95577 1.20962 0.96512 0.97304 0.97598 1.21193 1.00710 1.00682 0.93082 1.20240 0.95045 0.98698 0.95905 1.20792 1.01934 0.99554 0.94045 1.21286 0.96118 0.98115 0.98879 1.21231 1.00045 1.00186 0.92189 1.23202 0.94159 1.03248 0.96572 1.23191 0.98951 1.00123 0.95407 1.20317 0.83118 0.91060 0.90609 0.99932 1.21493 1.18245 1.26145 0.93112 0.91824 1.25923 0.95243 0.93999 1.02581 1.70185 1.20018 1.26337 1.37315 0.85639 0.77980 0.78207 0.79933 1.19531 1.20996 1.18877 1.88753 1.33058 1.73826 1.33389 0.93017 0.95223 0.91578 0.92386 0.89463 0.89026 0.85796 0.90070 0.91523 0.90142 0.83240 0.84164 0.90758 0.88044 0.90774 0.91464 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.14 71.98 0.66 -4.29 16 2 C -0.11 -3.75 5.06 30.60 0.15 -3.60 16 3 C 0.12 4.90 0.77 -11.07 -0.01 4.89 16 4 C -0.09 -3.53 4.26 -19.87 -0.08 -3.61 16 5 C -0.11 -4.22 7.51 22.27 0.17 -4.05 16 6 C -0.14 -4.57 9.70 22.27 0.22 -4.36 16 7 C -0.10 -2.67 5.88 -19.86 -0.12 -2.79 16 8 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 9 C -0.13 -3.25 9.70 22.27 0.22 -3.04 16 10 C -0.12 -3.53 8.75 22.27 0.19 -3.33 16 11 C -0.13 -4.64 5.04 31.86 0.16 -4.47 16 12 C -0.14 -5.74 6.53 32.05 0.21 -5.53 16 13 C 0.20 11.00 3.22 30.51 0.10 11.10 16 14 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 15 C -0.55 -31.95 8.79 25.60 0.23 -31.73 16 16 H 0.06 3.52 7.76 -2.91 -0.02 3.50 16 17 C 0.02 1.43 5.43 84.65 0.46 1.89 16 18 N -0.90 -55.92 13.05 21.45 0.28 -55.64 16 19 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 O -0.37 -19.49 8.53 -148.98 -1.27 -20.76 16 24 H 0.05 1.81 6.16 -2.39 -0.01 1.79 16 25 H 0.03 1.25 7.75 -2.39 -0.02 1.23 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.09 4.34 7.49 -2.91 -0.02 4.31 16 30 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.08 1.22 8.08 -2.38 -0.02 1.20 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.14 3.44 6.81 -2.91 -0.02 3.42 16 36 H 0.07 2.45 6.85 -2.39 -0.02 2.44 16 37 H 0.10 2.75 7.82 -2.39 -0.02 2.73 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.12 320.36 5.30 -63.82 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.00 Total: 19.69 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.26 Total: -54.19 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.64 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.27 Total: -20.76 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.12 5.30 -63.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.841 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds