Wall clock time and date at job start Mon Mar 30 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.50702 * 109.89912 * 305.92836 * 3 2 1 5 5 C 1.38235 * 120.00065 * 268.79971 * 4 3 2 6 6 C 1.38225 * 120.00021 * 179.76351 * 5 4 3 7 7 C 1.38238 * 120.00112 * 0.50159 * 6 5 4 8 8 C 1.50702 * 120.00058 * 179.72236 * 7 6 5 9 9 C 1.38239 * 119.99768 * 359.75179 * 7 6 5 10 10 C 1.38232 * 119.99689 * 89.06478 * 4 3 2 11 11 C 1.54388 * 109.82889 * 184.99681 * 3 2 1 12 12 C 1.55308 * 102.43740 * 261.94499 * 11 3 2 13 13 C 1.54952 * 100.93825 * 325.76522 * 12 11 3 14 14 H 1.08998 * 110.31173 * 277.52833 * 13 12 11 15 15 C 1.50698 * 110.30826 * 155.46211 * 13 12 11 16 16 H 1.08008 * 120.00002 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00100 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00073 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99832 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47205 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46731 * 120.00174 * 19 17 15 22 22 H 1.48503 * 109.46847 * 240.00010 * 19 17 15 23 23 O 1.43640 * 105.13916 * 36.44606 * 13 12 11 24 24 H 1.08993 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47746 * 300.00894 * 1 2 3 26 26 H 1.09004 * 109.47054 * 60.00096 * 1 2 3 27 27 H 1.08995 * 109.47292 * 239.99879 * 2 1 3 28 28 H 1.09005 * 109.46781 * 119.99428 * 2 1 3 29 29 H 1.08005 * 119.99543 * 359.97438 * 5 4 3 30 30 H 1.08007 * 120.00207 * 180.22886 * 6 5 4 31 31 H 1.08997 * 109.46965 * 270.02614 * 8 7 6 32 32 H 1.08999 * 109.47077 * 30.02410 * 8 7 6 33 33 H 1.09003 * 109.46804 * 150.02626 * 8 7 6 34 34 H 1.07996 * 119.99823 * 179.97438 * 9 7 6 35 35 H 1.07994 * 120.00598 * 0.02562 * 10 4 3 36 36 H 1.09002 * 110.84891 * 143.65089 * 11 3 2 37 37 H 1.09001 * 110.84460 * 20.23282 * 11 3 2 38 38 H 1.09000 * 111.12817 * 83.68227 * 12 11 3 39 39 H 1.08998 * 111.12300 * 207.80930 * 12 11 3 40 40 H 0.96999 * 120.00413 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4270 2.2033 -1.1475 5 6 2.0722 2.2497 -2.3691 6 6 1.5076 2.9434 -3.4230 7 6 0.3028 3.5994 -3.2523 8 6 -0.3097 4.3609 -4.3995 9 6 -0.3399 3.5573 -2.0291 10 6 0.2223 2.8592 -0.9767 11 6 3.5786 1.4540 -0.1265 12 6 4.0342 1.6253 1.3483 13 6 2.9041 2.5293 1.9021 14 1 3.1004 3.5732 1.6573 15 6 2.7803 2.3572 3.3941 16 1 3.4347 1.6739 3.9150 17 6 1.8318 3.0721 4.0942 18 7 1.0353 3.9046 3.4600 19 14 1.6780 2.8582 5.9436 20 1 2.6832 1.8713 6.4130 21 1 1.9145 4.1620 6.6139 22 1 0.3143 2.3719 6.2738 23 8 1.7083 2.0796 1.2455 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0158 1.7411 -2.5011 30 1 2.0099 2.9766 -4.3786 31 1 0.0457 5.3911 -4.3826 32 1 -0.0222 3.8928 -5.3410 33 1 -1.3955 4.3495 -4.3046 34 1 -1.2809 4.0701 -1.8956 35 1 -0.2795 2.8269 -0.0209 36 1 3.9115 2.2945 -0.7355 37 1 3.9410 0.5117 -0.5375 38 1 4.0592 0.6663 1.8658 39 1 5.0012 2.1250 1.4052 40 1 0.3677 4.4073 3.9525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379783417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:48 Heat of formation + Delta-G solvation = -38.236707 kcal Electronic energy + Delta-G solvation = -20127.976212 eV Core-core repulsion = 17292.807906 eV Total energy + Delta-G solvation = -2835.168307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71331 -37.76472 -33.89144 -32.19638 -31.55832 -31.20622 -30.18007 -28.21589 -26.30619 -24.42947 -22.41593 -22.08202 -21.21806 -20.10782 -19.00489 -16.51032 -16.12927 -15.13348 -14.77717 -14.67433 -14.47335 -14.13356 -13.61147 -13.52204 -13.00046 -12.88992 -12.61557 -12.35704 -12.14788 -11.75153 -11.71456 -11.50770 -11.24315 -10.97200 -10.91580 -10.75592 -10.54737 -10.45803 -10.25800 -10.07252 -9.85805 -9.59877 -9.05465 -8.56934 -8.43460 -8.01671 -7.89560 -5.99198 -4.11839 1.77875 1.88350 3.30422 3.38534 3.41985 4.20340 4.43474 4.86072 5.11392 5.19238 5.30185 5.38913 5.43731 5.49066 5.55584 5.62117 5.69815 5.81141 5.91731 5.92980 5.99828 6.01518 6.18047 6.25488 6.33225 6.41865 6.48045 6.52907 6.55085 6.63791 6.73609 6.77507 6.83005 6.92039 6.97391 7.05742 7.23132 7.49886 7.63017 7.90911 8.29470 8.66724 9.05041 9.58929 11.07971 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.006237 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.081422 B = 4488.479549 C = 4876.347580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.136 3.864 4 C -0.072 4.072 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.211 3.789 14 H 0.027 0.973 15 C -0.531 4.531 16 H 0.062 0.938 17 C 0.079 3.921 18 N -0.862 5.862 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.342 6.342 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 -3.154 -12.589 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.095 3.905 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.166 4.166 9 C -0.146 4.146 10 C -0.096 4.096 11 C -0.185 4.185 12 C -0.184 4.184 13 C 0.156 3.844 14 H 0.045 0.955 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.127 4.127 18 N -0.498 5.498 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.261 6.261 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.717 -2.993 -12.490 12.864 hybrid contribution 0.091 -0.042 0.906 0.911 sum -0.626 -3.036 -11.584 11.992 Atomic orbital electron populations 1.21756 0.95859 1.00239 1.02572 1.21693 0.96650 0.95418 1.01075 1.20788 0.92150 0.91317 0.86241 1.20279 0.94959 0.97481 0.94555 1.20981 0.99706 1.00074 0.92882 1.20833 0.95887 0.99603 0.98564 1.19801 0.95702 0.99325 0.95363 1.20724 1.00382 0.99476 0.95969 1.21024 1.00221 1.00498 0.92866 1.21169 0.95029 0.94682 0.98714 1.23214 0.95443 1.01117 0.98679 1.23318 1.00253 1.01374 0.93483 1.20505 0.79681 0.92295 0.91905 0.95533 1.21141 1.19239 1.25752 0.90700 0.91993 1.25057 0.95124 0.94332 0.98177 1.70043 1.19431 1.24982 1.35386 0.86608 0.78055 0.77959 0.85752 1.19677 1.20966 1.20880 1.88913 1.32883 1.75605 1.28701 0.94042 0.91464 0.93020 0.92733 0.91332 0.86492 0.86911 0.91675 0.92124 0.91975 0.86691 0.84894 0.91424 0.91762 0.91656 0.92084 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.01 37.16 0.33 -2.20 16 2 C -0.11 -1.96 5.12 -26.73 -0.14 -2.10 16 3 C 0.14 2.69 0.79 -91.04 -0.07 2.62 16 4 C -0.07 -1.35 4.11 -104.62 -0.43 -1.78 16 5 C -0.12 -1.91 8.75 -39.59 -0.35 -2.25 16 6 C -0.13 -1.91 9.70 -39.59 -0.38 -2.30 16 7 C -0.10 -1.49 5.88 -104.62 -0.62 -2.11 16 8 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 9 C -0.13 -2.09 9.70 -39.58 -0.38 -2.48 16 10 C -0.08 -1.48 7.48 -39.58 -0.30 -1.78 16 11 C -0.15 -2.66 5.02 -24.78 -0.12 -2.78 16 12 C -0.15 -3.04 6.53 -24.48 -0.16 -3.20 16 13 C 0.21 5.44 3.22 -26.85 -0.09 5.35 16 14 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 15 C -0.53 -14.83 8.80 -34.44 -0.30 -15.13 16 16 H 0.06 1.69 7.76 -52.48 -0.41 1.28 16 17 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 18 N -0.86 -25.40 13.05 55.43 0.72 -24.68 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 O -0.34 -8.55 8.82 -35.23 -0.31 -8.86 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 26 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 27 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.12 1.67 6.80 -52.48 -0.36 1.32 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.82 7.51 -52.49 -0.39 2.43 16 36 H 0.07 1.18 6.83 -51.93 -0.35 0.83 16 37 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 38 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -29.94 320.46 -8.94 -38.88 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.42 Total: 2.33 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -2.74 Total: -28.85 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.72 Total: -24.68 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.31 Total: -8.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.94 -8.94 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.645 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds