Wall clock time and date at job start Mon Mar 30 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.50702 * 109.89912 * 305.92836 * 3 2 1 5 5 C 1.38235 * 120.00065 * 268.79971 * 4 3 2 6 6 C 1.38225 * 120.00021 * 179.76351 * 5 4 3 7 7 C 1.38238 * 120.00112 * 0.50159 * 6 5 4 8 8 C 1.50702 * 120.00058 * 179.72236 * 7 6 5 9 9 C 1.38239 * 119.99768 * 359.75179 * 7 6 5 10 10 C 1.38232 * 119.99689 * 89.06478 * 4 3 2 11 11 C 1.54388 * 109.82889 * 184.99681 * 3 2 1 12 12 C 1.55308 * 102.43740 * 261.94499 * 11 3 2 13 13 C 1.54952 * 100.93825 * 325.76522 * 12 11 3 14 14 H 1.08998 * 110.31173 * 277.52833 * 13 12 11 15 15 C 1.50698 * 110.30826 * 155.46211 * 13 12 11 16 16 H 1.08008 * 120.00002 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00100 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00073 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99832 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47205 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46731 * 120.00174 * 19 17 15 22 22 H 1.48503 * 109.46847 * 240.00010 * 19 17 15 23 23 O 1.43640 * 105.13916 * 36.44606 * 13 12 11 24 24 H 1.08993 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47746 * 300.00894 * 1 2 3 26 26 H 1.09004 * 109.47054 * 60.00096 * 1 2 3 27 27 H 1.08995 * 109.47292 * 239.99879 * 2 1 3 28 28 H 1.09005 * 109.46781 * 119.99428 * 2 1 3 29 29 H 1.08005 * 119.99543 * 359.97438 * 5 4 3 30 30 H 1.08007 * 120.00207 * 180.22886 * 6 5 4 31 31 H 1.08997 * 109.46965 * 270.02614 * 8 7 6 32 32 H 1.08999 * 109.47077 * 30.02410 * 8 7 6 33 33 H 1.09003 * 109.46804 * 150.02626 * 8 7 6 34 34 H 1.07996 * 119.99823 * 179.97438 * 9 7 6 35 35 H 1.07994 * 120.00598 * 0.02562 * 10 4 3 36 36 H 1.09002 * 110.84891 * 143.65089 * 11 3 2 37 37 H 1.09001 * 110.84460 * 20.23282 * 11 3 2 38 38 H 1.09000 * 111.12817 * 83.68227 * 12 11 3 39 39 H 1.08998 * 111.12300 * 207.80930 * 12 11 3 40 40 H 0.96999 * 120.00413 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4270 2.2033 -1.1475 5 6 2.0722 2.2497 -2.3691 6 6 1.5076 2.9434 -3.4230 7 6 0.3028 3.5994 -3.2523 8 6 -0.3097 4.3609 -4.3995 9 6 -0.3399 3.5573 -2.0291 10 6 0.2223 2.8592 -0.9767 11 6 3.5786 1.4540 -0.1265 12 6 4.0342 1.6253 1.3483 13 6 2.9041 2.5293 1.9021 14 1 3.1004 3.5732 1.6573 15 6 2.7803 2.3572 3.3941 16 1 3.4347 1.6739 3.9150 17 6 1.8318 3.0721 4.0942 18 7 1.0353 3.9046 3.4600 19 14 1.6780 2.8582 5.9436 20 1 2.6832 1.8713 6.4130 21 1 1.9145 4.1620 6.6139 22 1 0.3143 2.3719 6.2738 23 8 1.7083 2.0796 1.2455 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0158 1.7411 -2.5011 30 1 2.0099 2.9766 -4.3786 31 1 0.0457 5.3911 -4.3826 32 1 -0.0222 3.8928 -5.3410 33 1 -1.3955 4.3495 -4.3046 34 1 -1.2809 4.0701 -1.8956 35 1 -0.2795 2.8269 -0.0209 36 1 3.9115 2.2945 -0.7355 37 1 3.9410 0.5117 -0.5375 38 1 4.0592 0.6663 1.8658 39 1 5.0012 2.1250 1.4052 40 1 0.3677 4.4073 3.9525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379783417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:47 Heat of formation + Delta-G solvation = -53.928434 kcal Electronic energy + Delta-G solvation = -20128.656657 eV Core-core repulsion = 17292.807906 eV Total energy + Delta-G solvation = -2835.848751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15830 -39.23549 -35.54060 -34.12604 -32.90755 -32.71584 -31.56260 -29.84246 -27.77260 -26.07061 -23.85504 -23.59733 -22.53980 -21.82403 -20.44774 -18.61184 -17.57214 -16.74130 -16.62116 -15.98982 -15.91009 -15.62937 -15.09801 -14.64740 -14.42394 -14.30160 -14.14995 -13.98559 -13.64884 -13.35447 -12.93085 -12.84140 -12.68982 -12.63608 -12.42447 -12.35472 -12.28746 -12.00978 -11.84249 -11.71468 -11.32181 -11.20807 -10.92314 -10.70502 -9.81505 -9.69677 -9.27194 -8.13991 -6.34468 0.52053 0.60496 1.38271 1.39458 1.51776 2.40020 2.92537 3.04117 3.53797 3.79455 3.98564 4.02114 4.09847 4.14718 4.26269 4.34575 4.49402 4.53633 4.58455 4.65834 4.72633 4.85474 4.88344 4.93531 4.96698 4.98393 5.02292 5.05745 5.13522 5.25162 5.26798 5.31005 5.43070 5.45733 5.57998 5.67556 5.76422 5.78632 5.90027 6.20742 6.23825 6.65104 7.11196 7.41739 8.93714 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.006237 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.081422 B = 4488.479549 C = 4876.347580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.122 3.878 4 C -0.093 4.093 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.099 4.099 8 C -0.107 4.107 9 C -0.139 4.139 10 C -0.105 4.105 11 C -0.135 4.135 12 C -0.139 4.139 13 C 0.204 3.796 14 H -0.017 1.017 15 C -0.551 4.551 16 H 0.064 0.936 17 C 0.024 3.976 18 N -0.901 5.901 19 Si 0.959 3.041 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.282 1.282 23 O -0.373 6.373 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -4.216 -14.906 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.082 3.918 4 C -0.093 4.093 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.099 4.099 8 C -0.163 4.163 9 C -0.157 4.157 10 C -0.123 4.123 11 C -0.172 4.172 12 C -0.176 4.176 13 C 0.149 3.851 14 H 0.000 1.000 15 C -0.588 4.588 16 H 0.082 0.918 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.783 3.217 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.208 1.208 23 O -0.293 6.293 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.320 -4.066 -14.812 15.364 hybrid contribution -0.260 0.319 1.523 1.578 sum 0.060 -3.747 -13.289 13.807 Atomic orbital electron populations 1.21658 0.96019 1.01161 1.00775 1.21702 0.96553 0.94293 1.02021 1.21135 0.93722 0.92210 0.84701 1.20230 0.95197 0.98531 0.95384 1.21229 1.00288 1.00139 0.91998 1.21285 0.95560 0.97987 0.99545 1.20241 0.95583 0.98610 0.95440 1.20792 1.00782 0.99519 0.95239 1.21193 1.00899 1.00362 0.93209 1.20958 0.96138 0.97248 0.97994 1.23198 0.93852 1.03298 0.96847 1.23188 0.98996 1.00237 0.95224 1.20317 0.82058 0.91210 0.91535 0.99968 1.21556 1.19226 1.25596 0.92452 0.91804 1.25931 0.94781 0.94001 1.03098 1.70196 1.20256 1.26187 1.37259 0.85520 0.78047 0.78266 0.79844 1.18487 1.20223 1.20804 1.88834 1.32879 1.76222 1.31364 0.91552 0.95293 0.92851 0.89318 0.92503 0.84157 0.83226 0.90751 0.89831 0.91155 0.85782 0.89075 0.90777 0.88043 0.91474 0.90757 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.01 71.98 0.65 -4.22 16 2 C -0.11 -3.75 5.12 30.59 0.16 -3.60 16 3 C 0.12 4.87 0.79 -11.07 -0.01 4.86 16 4 C -0.09 -3.47 4.11 -19.87 -0.08 -3.55 16 5 C -0.12 -3.52 8.75 22.27 0.19 -3.32 16 6 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 7 C -0.10 -2.66 5.88 -19.86 -0.12 -2.77 16 8 C -0.11 -1.99 10.01 71.24 0.71 -1.27 16 9 C -0.14 -4.56 9.70 22.27 0.22 -4.34 16 10 C -0.11 -4.20 7.48 22.27 0.17 -4.03 16 11 C -0.13 -4.64 5.02 31.86 0.16 -4.48 16 12 C -0.14 -5.74 6.53 32.05 0.21 -5.53 16 13 C 0.20 11.01 3.22 30.51 0.10 11.11 16 14 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 15 C -0.55 -31.91 8.80 25.60 0.23 -31.68 16 16 H 0.06 3.56 7.76 -2.91 -0.02 3.53 16 17 C 0.02 1.39 5.43 84.66 0.46 1.85 16 18 N -0.90 -55.99 13.05 21.45 0.28 -55.71 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 O -0.37 -19.70 8.82 -148.98 -1.31 -21.01 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 26 H 0.05 1.82 6.15 -2.38 -0.01 1.81 16 27 H 0.09 2.46 8.09 -2.39 -0.02 2.44 16 28 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.14 3.43 6.80 -2.91 -0.02 3.41 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 33 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.09 4.31 7.51 -2.91 -0.02 4.29 16 36 H 0.07 2.45 6.83 -2.39 -0.02 2.43 16 37 H 0.10 2.74 7.78 -2.39 -0.02 2.73 16 38 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -69.42 320.46 5.25 -64.18 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.00 Total: 19.37 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 3.26 Total: -53.99 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.31 Total: -21.01 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.42 5.25 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.249 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds