Wall clock time and date at job start Mon Mar 30 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46979 * 2 1 4 4 C 1.50697 * 109.86882 * 305.44566 * 3 2 1 5 5 C 1.38238 * 119.99865 * 269.28134 * 4 3 2 6 6 C 1.38234 * 119.99874 * 179.76756 * 5 4 3 7 7 C 1.38237 * 120.00096 * 0.48472 * 6 5 4 8 8 C 1.50698 * 120.00366 * 179.77167 * 7 6 5 9 9 C 1.38242 * 119.99795 * 359.78625 * 7 6 5 10 10 C 1.38232 * 120.00194 * 89.55314 * 4 3 2 11 11 C 1.54097 * 110.00260 * 184.35849 * 3 2 1 12 12 C 1.54811 * 104.18723 * 242.53650 * 11 3 2 13 13 C 1.54994 * 102.09418 * 20.88054 * 12 11 3 14 14 H 1.08998 * 110.75263 * 81.54397 * 13 12 11 15 15 C 1.50701 * 110.61786 * 204.48039 * 13 12 11 16 16 H 1.08002 * 119.99761 * 355.51702 * 15 13 12 17 17 C 1.37871 * 119.99694 * 175.80265 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 O 1.43746 * 109.87803 * 66.45006 * 3 2 1 24 24 H 1.08999 * 109.46882 * 60.00250 * 1 2 3 25 25 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47282 * 300.00611 * 1 2 3 27 27 H 1.08995 * 109.47448 * 240.00156 * 2 1 3 28 28 H 1.08999 * 109.46882 * 119.99750 * 2 1 3 29 29 H 1.07998 * 119.99921 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.00294 * 180.24905 * 6 5 4 31 31 H 1.09001 * 109.46649 * 270.02071 * 8 7 6 32 32 H 1.09008 * 109.47212 * 30.01652 * 8 7 6 33 33 H 1.09000 * 109.47649 * 150.01886 * 8 7 6 34 34 H 1.07996 * 119.99831 * 179.97438 * 9 7 6 35 35 H 1.08004 * 119.99956 * 0.02562 * 10 4 3 36 36 H 1.09009 * 110.48721 * 1.21180 * 11 3 2 37 37 H 1.08999 * 110.48687 * 123.85379 * 11 3 2 38 38 H 1.09001 * 110.90205 * 262.68344 * 12 11 3 39 39 H 1.08998 * 110.90854 * 139.08123 * 12 11 3 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4358 2.1994 -1.1546 5 6 2.0856 2.2338 -2.3742 6 6 1.5290 2.9241 -3.4347 7 6 0.3275 3.5883 -3.2728 8 6 -0.2767 4.3450 -4.4274 9 6 -0.3195 3.5585 -2.0515 10 6 0.2345 2.8639 -0.9925 11 6 3.5769 1.4583 -0.1100 12 6 4.0450 2.1204 1.2088 13 6 2.8165 1.9120 2.1306 14 1 2.8190 0.9087 2.5564 15 6 2.7904 2.9502 3.2226 16 1 3.6042 3.6537 3.3185 17 6 1.7304 2.9980 4.1030 18 7 0.7394 2.1413 3.9863 19 14 1.7018 4.2799 5.4615 20 1 2.9249 5.1177 5.3774 21 1 0.5008 5.1394 5.3058 22 1 1.6569 3.6013 6.7816 23 8 1.6937 2.0834 1.2392 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0265 1.7186 -2.4995 30 1 2.0347 2.9476 -4.3887 31 1 0.0846 5.3734 -4.4166 32 1 0.0112 3.8686 -5.3646 33 1 -1.3629 4.3406 -4.3362 34 1 -1.2580 4.0778 -1.9249 35 1 -0.2708 2.8411 -0.0383 36 1 3.9645 0.4422 -0.1854 37 1 3.8919 2.0523 -0.9680 38 1 4.2452 3.1817 1.0614 39 1 4.9223 1.6123 1.6091 40 1 -0.0061 2.1748 4.6059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379783418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:50 Heat of formation + Delta-G solvation = -36.263419 kcal Electronic energy + Delta-G solvation = -20137.499896 eV Core-core repulsion = 17302.417158 eV Total energy + Delta-G solvation = -2835.082738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76438 -37.82545 -33.83579 -32.21104 -31.58662 -31.16806 -30.19789 -28.24101 -26.30384 -24.46210 -22.44411 -22.25445 -21.21789 -19.87014 -18.98691 -16.77553 -15.87694 -15.31195 -14.77837 -14.58064 -14.41012 -14.14486 -13.61458 -13.41424 -13.33987 -12.99781 -12.61663 -12.27142 -12.08376 -11.90547 -11.59912 -11.54180 -11.22521 -11.04943 -10.89187 -10.60970 -10.49160 -10.44868 -10.14822 -10.11760 -9.83353 -9.58739 -9.04315 -8.59705 -8.47812 -8.08742 -7.94412 -6.00649 -4.12389 1.74053 1.83839 3.30291 3.38426 3.42157 4.16238 4.43020 4.88732 5.07558 5.17321 5.29551 5.37964 5.42658 5.48340 5.62814 5.65114 5.68036 5.83434 5.85938 5.90340 6.00461 6.05152 6.13448 6.30176 6.37696 6.42701 6.49888 6.50055 6.56593 6.67866 6.73981 6.79812 6.83126 6.93816 7.00214 7.06777 7.19908 7.45192 7.55356 7.90107 8.25659 8.60777 8.99942 9.57726 11.06900 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.006387 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.154801 B = 4382.731738 C = 4739.058145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.132 3.868 4 C -0.058 4.058 5 C -0.119 4.119 6 C -0.129 4.129 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.128 4.128 10 C -0.082 4.082 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.211 3.789 14 H 0.025 0.975 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.334 6.334 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -0.905 -13.240 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.091 3.909 4 C -0.058 4.058 5 C -0.137 4.137 6 C -0.147 4.147 7 C -0.102 4.102 8 C -0.166 4.166 9 C -0.146 4.146 10 C -0.100 4.100 11 C -0.187 4.187 12 C -0.185 4.185 13 C 0.155 3.845 14 H 0.043 0.957 15 C -0.566 4.566 16 H 0.082 0.918 17 C -0.127 4.127 18 N -0.498 5.498 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.253 6.253 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.367 -0.860 -13.116 13.149 hybrid contribution 0.133 0.545 0.701 0.898 sum -0.234 -0.315 -12.415 12.421 Atomic orbital electron populations 1.21740 0.95676 1.00266 1.02667 1.21857 0.96953 0.96059 1.00943 1.20721 0.92143 0.91122 0.86962 1.19925 0.94749 0.97053 0.94101 1.21006 0.99740 1.00168 0.92796 1.20839 0.95911 0.99442 0.98510 1.19803 0.95719 0.99335 0.95351 1.20726 1.00439 0.99490 0.95909 1.21021 1.00170 1.00544 0.92841 1.21163 0.95143 0.94932 0.98754 1.23134 0.95599 1.00546 0.99466 1.23197 1.00318 1.00060 0.94930 1.20645 0.79852 0.96620 0.87346 0.95690 1.21026 1.06701 1.17791 1.11072 0.91830 1.25045 0.95305 0.95339 0.97047 1.70041 1.08607 1.35008 1.36146 0.86592 0.78147 0.81798 0.81765 1.19667 1.20879 1.20939 1.89279 1.41404 1.74934 1.19727 0.93265 0.94144 0.90950 0.92969 0.91503 0.86237 0.86819 0.91673 0.92081 0.91957 0.86654 0.84965 0.91915 0.91441 0.91804 0.92379 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.05 37.16 0.34 -2.30 16 2 C -0.12 -2.21 4.98 -26.73 -0.13 -2.35 16 3 C 0.13 2.63 0.70 -91.20 -0.06 2.57 16 4 C -0.06 -1.07 4.14 -104.63 -0.43 -1.51 16 5 C -0.12 -1.89 8.73 -39.58 -0.35 -2.24 16 6 C -0.13 -1.84 9.70 -39.58 -0.38 -2.23 16 7 C -0.10 -1.46 5.88 -104.62 -0.62 -2.07 16 8 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 9 C -0.13 -2.03 9.70 -39.58 -0.38 -2.41 16 10 C -0.08 -1.53 7.51 -39.59 -0.30 -1.83 16 11 C -0.15 -2.74 5.76 -25.20 -0.15 -2.89 16 12 C -0.15 -3.11 6.55 -24.72 -0.16 -3.27 16 13 C 0.21 5.39 3.08 -26.83 -0.08 5.31 16 14 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 15 C -0.53 -14.82 8.83 -34.44 -0.30 -15.12 16 16 H 0.06 1.75 7.78 -52.49 -0.41 1.34 16 17 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -25.16 12.95 55.43 0.72 -24.44 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 O -0.33 -8.39 8.79 -35.23 -0.31 -8.70 16 24 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.51 7.89 -51.93 -0.41 1.11 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 29 H 0.12 1.69 6.46 -52.49 -0.34 1.35 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.57 8.09 -51.92 -0.42 0.15 16 33 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 2.74 7.51 -52.48 -0.39 2.35 16 36 H 0.06 1.02 7.70 -51.92 -0.40 0.62 16 37 H 0.07 1.12 5.78 -51.93 -0.30 0.82 16 38 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -29.79 319.21 -8.89 -38.68 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.34 Total: 2.31 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.75 Total: -29.03 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.72 Total: -24.44 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.31 Total: -8.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.79 -8.89 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.415 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds