Wall clock time and date at job start Mon Mar 30 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46979 * 2 1 4 4 C 1.50697 * 109.86882 * 305.44566 * 3 2 1 5 5 C 1.38238 * 119.99865 * 269.28134 * 4 3 2 6 6 C 1.38234 * 119.99874 * 179.76756 * 5 4 3 7 7 C 1.38237 * 120.00096 * 0.48472 * 6 5 4 8 8 C 1.50698 * 120.00366 * 179.77167 * 7 6 5 9 9 C 1.38242 * 119.99795 * 359.78625 * 7 6 5 10 10 C 1.38232 * 120.00194 * 89.55314 * 4 3 2 11 11 C 1.54097 * 110.00260 * 184.35849 * 3 2 1 12 12 C 1.54811 * 104.18723 * 242.53650 * 11 3 2 13 13 C 1.54994 * 102.09418 * 20.88054 * 12 11 3 14 14 H 1.08998 * 110.75263 * 81.54397 * 13 12 11 15 15 C 1.50701 * 110.61786 * 204.48039 * 13 12 11 16 16 H 1.08002 * 119.99761 * 355.51702 * 15 13 12 17 17 C 1.37871 * 119.99694 * 175.80265 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 O 1.43746 * 109.87803 * 66.45006 * 3 2 1 24 24 H 1.08999 * 109.46882 * 60.00250 * 1 2 3 25 25 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47282 * 300.00611 * 1 2 3 27 27 H 1.08995 * 109.47448 * 240.00156 * 2 1 3 28 28 H 1.08999 * 109.46882 * 119.99750 * 2 1 3 29 29 H 1.07998 * 119.99921 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.00294 * 180.24905 * 6 5 4 31 31 H 1.09001 * 109.46649 * 270.02071 * 8 7 6 32 32 H 1.09008 * 109.47212 * 30.01652 * 8 7 6 33 33 H 1.09000 * 109.47649 * 150.01886 * 8 7 6 34 34 H 1.07996 * 119.99831 * 179.97438 * 9 7 6 35 35 H 1.08004 * 119.99956 * 0.02562 * 10 4 3 36 36 H 1.09009 * 110.48721 * 1.21180 * 11 3 2 37 37 H 1.08999 * 110.48687 * 123.85379 * 11 3 2 38 38 H 1.09001 * 110.90205 * 262.68344 * 12 11 3 39 39 H 1.08998 * 110.90854 * 139.08123 * 12 11 3 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4358 2.1994 -1.1546 5 6 2.0856 2.2338 -2.3742 6 6 1.5290 2.9241 -3.4347 7 6 0.3275 3.5883 -3.2728 8 6 -0.2767 4.3450 -4.4274 9 6 -0.3195 3.5585 -2.0515 10 6 0.2345 2.8639 -0.9925 11 6 3.5769 1.4583 -0.1100 12 6 4.0450 2.1204 1.2088 13 6 2.8165 1.9120 2.1306 14 1 2.8190 0.9087 2.5564 15 6 2.7904 2.9502 3.2226 16 1 3.6042 3.6537 3.3185 17 6 1.7304 2.9980 4.1030 18 7 0.7394 2.1413 3.9863 19 14 1.7018 4.2799 5.4615 20 1 2.9249 5.1177 5.3774 21 1 0.5008 5.1394 5.3058 22 1 1.6569 3.6013 6.7816 23 8 1.6937 2.0834 1.2392 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0265 1.7186 -2.4995 30 1 2.0347 2.9476 -4.3887 31 1 0.0846 5.3734 -4.4166 32 1 0.0112 3.8686 -5.3646 33 1 -1.3629 4.3406 -4.3362 34 1 -1.2580 4.0778 -1.9249 35 1 -0.2708 2.8411 -0.0383 36 1 3.9645 0.4422 -0.1854 37 1 3.8919 2.0523 -0.9680 38 1 4.2452 3.1817 1.0614 39 1 4.9223 1.6123 1.6091 40 1 -0.0061 2.1748 4.6059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379783418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:49 Heat of formation + Delta-G solvation = -51.739709 kcal Electronic energy + Delta-G solvation = -20138.170999 eV Core-core repulsion = 17302.417158 eV Total energy + Delta-G solvation = -2835.753841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20591 -39.27854 -35.49202 -34.12047 -33.00385 -32.63372 -31.56453 -29.87224 -27.76823 -26.08316 -24.04954 -23.65003 -22.49965 -21.59810 -20.43153 -18.73290 -17.47960 -16.95091 -16.42272 -16.05780 -15.83459 -15.57147 -15.08919 -14.90943 -14.45843 -14.39552 -14.10931 -13.88245 -13.72976 -13.31841 -12.95482 -12.87194 -12.69647 -12.62775 -12.49187 -12.30085 -12.16853 -11.95126 -11.83536 -11.68627 -11.31943 -11.24012 -10.95326 -10.70986 -9.89128 -9.70275 -9.27205 -8.15192 -6.34717 0.51281 0.59617 1.37709 1.39162 1.51249 2.39511 2.91607 3.05774 3.54955 3.80284 3.98456 4.06163 4.10329 4.17243 4.25035 4.31849 4.46061 4.51020 4.57446 4.66865 4.73498 4.80902 4.89630 4.93284 4.96166 4.98511 5.04578 5.06978 5.13103 5.22649 5.27067 5.30546 5.42620 5.44558 5.55455 5.67709 5.75705 5.77638 5.88207 6.19038 6.22651 6.61699 7.02373 7.39982 8.92654 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.006387 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.154801 B = 4382.731738 C = 4739.058145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.120 3.880 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.098 4.098 8 C -0.107 4.107 9 C -0.136 4.136 10 C -0.108 4.108 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.203 3.797 14 H -0.007 1.007 15 C -0.552 4.552 16 H 0.062 0.938 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.274 1.274 23 O -0.366 6.366 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -0.330 -16.114 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.080 3.920 4 C -0.080 4.080 5 C -0.137 4.137 6 C -0.141 4.141 7 C -0.098 4.098 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.127 4.127 11 C -0.177 4.177 12 C -0.179 4.179 13 C 0.148 3.852 14 H 0.010 0.990 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.200 1.200 23 O -0.286 6.286 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.656 -0.286 -15.997 16.013 hybrid contribution -0.219 0.361 1.506 1.564 sum 0.437 0.075 -14.490 14.497 Atomic orbital electron populations 1.21615 0.95864 1.00970 1.00867 1.21851 0.96812 0.95499 1.01432 1.21016 0.93650 0.91753 0.85630 1.19859 0.95176 0.98235 0.94736 1.21234 1.00302 1.00253 0.91904 1.21283 0.95612 0.97788 0.99413 1.20245 0.95517 0.98536 0.95475 1.20796 1.00850 0.99629 0.95100 1.21195 1.00856 1.00292 0.93029 1.20961 0.96106 0.97414 0.98170 1.23129 0.94068 1.02021 0.98467 1.23071 0.98971 1.00154 0.95658 1.20482 0.82336 0.94201 0.88217 0.98956 1.21435 1.06807 1.18228 1.12493 0.91980 1.25888 0.94900 0.97372 0.99505 1.70182 1.09237 1.36802 1.37215 0.85533 0.78212 0.79157 0.78870 1.18726 1.20834 1.19977 1.89206 1.41674 1.75851 1.21825 0.92568 0.92023 0.95213 0.89594 0.93533 0.84036 0.83145 0.90608 0.89911 0.91153 0.85529 0.88997 0.89550 0.89141 0.92603 0.90731 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.05 71.98 0.65 -4.43 16 2 C -0.12 -4.37 4.98 30.60 0.15 -4.22 16 3 C 0.12 4.84 0.70 -11.17 -0.01 4.83 16 4 C -0.08 -2.92 4.14 -19.87 -0.08 -3.00 16 5 C -0.12 -3.43 8.73 22.27 0.19 -3.23 16 6 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 7 C -0.10 -2.49 5.88 -19.86 -0.12 -2.61 16 8 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 9 C -0.14 -4.23 9.70 22.27 0.22 -4.02 16 10 C -0.11 -4.17 7.51 22.27 0.17 -4.00 16 11 C -0.14 -4.89 5.76 31.58 0.18 -4.71 16 12 C -0.14 -5.96 6.55 31.89 0.21 -5.75 16 13 C 0.20 10.88 3.08 30.53 0.09 10.98 16 14 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 15 C -0.55 -32.18 8.83 25.60 0.23 -31.95 16 16 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16 17 C 0.03 1.49 5.42 84.65 0.46 1.95 16 18 N -0.90 -55.07 12.95 21.45 0.28 -54.79 16 19 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 O -0.37 -19.37 8.79 -148.98 -1.31 -20.68 16 24 H 0.06 1.99 6.16 -2.39 -0.01 1.97 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 29 H 0.14 3.38 6.46 -2.91 -0.02 3.36 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.11 8.09 -2.38 -0.02 1.09 16 33 H 0.07 1.12 8.09 -2.39 -0.02 1.11 16 34 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.09 4.19 7.51 -2.91 -0.02 4.17 16 36 H 0.09 2.60 7.70 -2.38 -0.02 2.58 16 37 H 0.09 2.74 5.78 -2.39 -0.01 2.73 16 38 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 39 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -68.58 319.21 5.27 -63.31 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 1.00 Total: 19.04 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 3.27 Total: -54.10 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.28 Total: -54.79 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.31 Total: -20.68 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.58 5.27 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379783418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.571 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds