Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.86920 * 59.55525 * 4 3 2 6 6 C 1.38235 * 120.00375 * 90.42883 * 5 4 3 7 7 C 1.38235 * 119.99949 * 179.76863 * 6 5 4 8 8 C 1.38236 * 120.00184 * 0.50253 * 7 6 5 9 9 C 1.38241 * 119.99959 * 359.75168 * 8 7 6 10 10 C 1.38236 * 119.99662 * 359.97438 * 9 8 7 11 11 C 1.54096 * 109.88342 * 180.71297 * 4 3 2 12 12 C 1.54819 * 104.18863 * 117.39444 * 11 4 3 13 13 C 1.54995 * 102.08884 * 339.12338 * 12 11 4 14 14 H 1.09001 * 110.61593 * 278.51793 * 13 12 11 15 15 C 1.50700 * 110.61365 * 155.52318 * 13 12 11 16 16 H 1.07995 * 120.00338 * 4.47400 * 15 13 12 17 17 C 1.37882 * 119.99719 * 184.47068 * 15 13 12 18 18 N 1.31514 * 119.99775 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00067 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46794 * 90.00516 * 19 17 15 21 21 H 1.48499 * 109.47406 * 210.00255 * 19 17 15 22 22 H 1.48499 * 109.47283 * 330.00646 * 19 17 15 23 23 O 1.43743 * 109.88147 * 298.54948 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08004 * 119.99666 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.99887 * 180.23104 * 7 6 5 33 33 H 1.07998 * 119.99878 * 179.72274 * 8 7 6 34 34 H 1.07995 * 119.99732 * 179.97438 * 9 8 7 35 35 H 1.08006 * 119.99600 * 179.97438 * 10 9 8 36 36 H 1.08999 * 110.49454 * 236.07556 * 11 4 3 37 37 H 1.08998 * 110.48531 * 358.72174 * 11 4 3 38 38 H 1.09002 * 110.90610 * 220.92176 * 12 11 4 39 39 H 1.08999 * 110.90627 * 97.32214 * 12 11 4 40 40 H 0.97004 * 119.99941 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0816 0.7247 -1.2228 6 6 4.3245 1.4290 -2.3873 7 6 4.7984 0.7712 -3.5069 8 6 5.0197 -0.5927 -3.4653 9 6 4.7719 -1.2980 -2.3024 10 6 4.3033 -0.6392 -1.1811 11 6 4.0939 2.8916 0.0174 12 6 4.8730 2.9969 1.3511 13 6 4.2689 1.8297 2.1728 14 1 3.3224 2.1275 2.6240 15 6 5.2392 1.3663 3.2287 16 1 6.1725 1.8905 3.3718 17 6 4.9353 0.2732 4.0122 18 7 3.7990 -0.3654 3.8375 19 14 6.1383 -0.3017 5.3205 20 1 5.8418 0.3871 6.6024 21 1 6.0053 -1.7692 5.5048 22 1 7.5240 0.0202 4.8946 23 8 4.0593 0.7964 1.1864 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 4.1470 2.4938 -2.4212 32 1 4.9917 1.3221 -4.4155 33 1 5.3857 -1.1074 -4.3414 34 1 4.9443 -2.3636 -2.2701 35 1 4.1093 -1.1903 -0.2727 36 1 4.7592 3.0674 -0.8280 37 1 3.2636 3.5977 0.0038 38 1 4.6839 3.9538 1.8375 39 1 5.9407 2.8479 1.1907 40 1 3.5853 -1.1347 4.3884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379803311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = -36.384524 kcal Electronic energy + Delta-G solvation = -20287.805061 eV Core-core repulsion = 17452.717071 eV Total energy + Delta-G solvation = -2835.087990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72126 -37.61356 -34.21986 -32.53967 -31.51432 -30.80737 -30.18167 -28.20062 -26.31642 -23.89856 -22.50549 -21.86434 -21.07192 -19.76327 -19.05464 -16.93282 -16.19223 -15.39059 -14.93382 -14.51636 -14.35992 -14.29054 -13.75413 -13.68258 -13.01047 -12.80793 -12.55296 -12.27573 -12.08485 -11.76036 -11.56400 -11.47862 -10.99856 -10.92414 -10.82156 -10.61027 -10.49127 -10.33846 -10.12600 -9.97126 -9.77753 -9.57336 -9.05378 -8.60418 -8.49210 -8.24364 -7.97135 -6.00749 -4.12382 1.76388 1.83116 3.30777 3.37854 3.41421 4.20670 4.42883 4.87332 5.18577 5.29964 5.31265 5.35068 5.49108 5.56040 5.62227 5.67358 5.71831 5.84743 5.91696 6.00374 6.03914 6.23891 6.28122 6.32647 6.39543 6.40705 6.47890 6.51785 6.60973 6.67979 6.80132 6.80542 6.83717 6.89841 7.02126 7.10556 7.18522 7.43586 7.54779 7.89886 8.25368 8.60080 8.99384 9.57559 11.06645 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.007089 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.856235 B = 3948.761435 C = 4223.462748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.131 3.869 5 C -0.054 4.054 6 C -0.123 4.123 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.128 4.128 10 C -0.087 4.087 11 C -0.150 4.150 12 C -0.148 4.148 13 C 0.212 3.788 14 H 0.025 0.975 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.079 3.921 18 N -0.861 5.861 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.334 6.334 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 1.923 -11.601 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.152 4.152 4 C 0.090 3.910 5 C -0.054 4.054 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.105 4.105 11 C -0.187 4.187 12 C -0.185 4.185 13 C 0.157 3.843 14 H 0.043 0.957 15 C -0.567 4.567 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.497 5.497 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.253 6.253 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.508 1.547 -11.508 11.879 hybrid contribution 0.596 -0.137 0.620 0.871 sum -1.912 1.410 -10.888 11.144 Atomic orbital electron populations 1.21753 0.97069 1.00785 1.00835 1.21504 0.94314 0.97102 1.03036 1.21926 0.94923 0.97477 1.00900 1.20722 0.92395 0.90772 0.87121 1.19959 0.97064 0.94078 0.94302 1.21027 1.00530 0.99649 0.92879 1.20974 1.01103 0.94660 0.98036 1.21014 1.01736 0.94475 0.97904 1.21151 1.00410 0.99656 0.93413 1.21189 0.96681 0.94385 0.98197 1.23126 0.99805 0.96364 0.99427 1.23206 1.00018 1.00526 0.94794 1.20626 0.94610 0.82745 0.86354 0.95726 1.20982 1.05023 1.15044 1.15644 0.91906 1.25040 0.94994 0.96068 0.96589 1.70030 1.22028 1.19296 1.38326 0.86654 0.81792 0.77959 0.81904 1.20588 1.21120 1.19809 1.89278 1.84420 1.31987 1.19609 0.93020 0.93794 0.93393 0.89889 0.92619 0.92974 0.91625 0.86278 0.86796 0.86925 0.86616 0.84970 0.91467 0.91904 0.92384 0.91805 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.12 -2.19 5.18 -26.73 -0.14 -2.32 16 3 C -0.11 -2.07 4.21 -26.74 -0.11 -2.18 16 4 C 0.13 2.59 0.69 -91.20 -0.06 2.53 16 5 C -0.05 -0.98 4.30 -104.62 -0.45 -1.43 16 6 C -0.12 -1.93 8.73 -39.58 -0.35 -2.28 16 7 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 8 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 9 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 10 C -0.09 -1.60 7.53 -39.58 -0.30 -1.89 16 11 C -0.15 -2.71 5.75 -25.20 -0.15 -2.86 16 12 C -0.15 -3.10 6.55 -24.72 -0.16 -3.26 16 13 C 0.21 5.38 3.11 -26.83 -0.08 5.30 16 14 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 15 C -0.53 -14.77 8.83 -34.44 -0.30 -15.08 16 16 H 0.06 1.72 7.78 -52.49 -0.41 1.31 16 17 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -24.92 12.94 55.43 0.72 -24.20 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 O -0.33 -8.29 8.57 -35.23 -0.30 -8.59 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.77 7.74 -51.93 -0.40 1.37 16 28 H 0.06 0.97 6.18 -51.93 -0.32 0.65 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.12 1.67 6.48 -52.48 -0.34 1.33 16 32 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.71 7.49 -52.48 -0.39 2.31 16 36 H 0.07 1.11 5.81 -51.93 -0.30 0.81 16 37 H 0.06 1.02 7.70 -51.93 -0.40 0.62 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -29.32 319.43 -9.16 -38.48 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.35 Total: 3.27 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -3.02 Total: -30.10 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.72 Total: -24.20 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.30 Total: -8.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.32 -9.16 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.098 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds