Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.86920 * 59.55525 * 4 3 2 6 6 C 1.38235 * 120.00375 * 90.42883 * 5 4 3 7 7 C 1.38235 * 119.99949 * 179.76863 * 6 5 4 8 8 C 1.38236 * 120.00184 * 0.50253 * 7 6 5 9 9 C 1.38241 * 119.99959 * 359.75168 * 8 7 6 10 10 C 1.38236 * 119.99662 * 359.97438 * 9 8 7 11 11 C 1.54096 * 109.88342 * 180.71297 * 4 3 2 12 12 C 1.54819 * 104.18863 * 117.39444 * 11 4 3 13 13 C 1.54995 * 102.08884 * 339.12338 * 12 11 4 14 14 H 1.09001 * 110.61593 * 278.51793 * 13 12 11 15 15 C 1.50700 * 110.61365 * 155.52318 * 13 12 11 16 16 H 1.07995 * 120.00338 * 4.47400 * 15 13 12 17 17 C 1.37882 * 119.99719 * 184.47068 * 15 13 12 18 18 N 1.31514 * 119.99775 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00067 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46794 * 90.00516 * 19 17 15 21 21 H 1.48499 * 109.47406 * 210.00255 * 19 17 15 22 22 H 1.48499 * 109.47283 * 330.00646 * 19 17 15 23 23 O 1.43743 * 109.88147 * 298.54948 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08004 * 119.99666 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.99887 * 180.23104 * 7 6 5 33 33 H 1.07998 * 119.99878 * 179.72274 * 8 7 6 34 34 H 1.07995 * 119.99732 * 179.97438 * 9 8 7 35 35 H 1.08006 * 119.99600 * 179.97438 * 10 9 8 36 36 H 1.08999 * 110.49454 * 236.07556 * 11 4 3 37 37 H 1.08998 * 110.48531 * 358.72174 * 11 4 3 38 38 H 1.09002 * 110.90610 * 220.92176 * 12 11 4 39 39 H 1.08999 * 110.90627 * 97.32214 * 12 11 4 40 40 H 0.97004 * 119.99941 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0816 0.7247 -1.2228 6 6 4.3245 1.4290 -2.3873 7 6 4.7984 0.7712 -3.5069 8 6 5.0197 -0.5927 -3.4653 9 6 4.7719 -1.2980 -2.3024 10 6 4.3033 -0.6392 -1.1811 11 6 4.0939 2.8916 0.0174 12 6 4.8730 2.9969 1.3511 13 6 4.2689 1.8297 2.1728 14 1 3.3224 2.1275 2.6240 15 6 5.2392 1.3663 3.2287 16 1 6.1725 1.8905 3.3718 17 6 4.9353 0.2732 4.0122 18 7 3.7990 -0.3654 3.8375 19 14 6.1383 -0.3017 5.3205 20 1 5.8418 0.3871 6.6024 21 1 6.0053 -1.7692 5.5048 22 1 7.5240 0.0202 4.8946 23 8 4.0593 0.7964 1.1864 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 4.1470 2.4938 -2.4212 32 1 4.9917 1.3221 -4.4155 33 1 5.3857 -1.1074 -4.3414 34 1 4.9443 -2.3636 -2.2701 35 1 4.1093 -1.1903 -0.2727 36 1 4.7592 3.0674 -0.8280 37 1 3.2636 3.5977 0.0038 38 1 4.6839 3.9538 1.8375 39 1 5.9407 2.8479 1.1907 40 1 3.5853 -1.1347 4.3884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379803311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = -51.325305 kcal Electronic energy + Delta-G solvation = -20288.452942 eV Core-core repulsion = 17452.717071 eV Total energy + Delta-G solvation = -2835.735871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17705 -39.05093 -35.79234 -34.49379 -33.07892 -32.29842 -31.50538 -29.72422 -28.05075 -25.58691 -23.78510 -23.37992 -22.50087 -21.43570 -20.50193 -18.75751 -17.77550 -16.95996 -16.62844 -16.22214 -15.74011 -15.64829 -15.25716 -15.18346 -14.46232 -14.15240 -14.11658 -13.86351 -13.62069 -13.32658 -13.05635 -12.89380 -12.75486 -12.48675 -12.32648 -12.23119 -12.12250 -11.95739 -11.72106 -11.48747 -11.28204 -11.16522 -10.95532 -10.69102 -9.89628 -9.68679 -9.47241 -8.14413 -6.33870 0.55260 0.60936 1.38100 1.39747 1.50010 2.39737 2.97458 3.06571 3.54080 3.80347 3.96898 4.07811 4.18336 4.23437 4.26931 4.30358 4.38156 4.43704 4.53989 4.70088 4.74398 4.79499 4.87723 4.89190 4.93286 4.98014 5.08206 5.10979 5.17631 5.22560 5.27197 5.36337 5.45860 5.52123 5.58853 5.68081 5.74222 5.76058 5.88532 6.19611 6.22683 6.61858 7.02720 7.40537 8.92895 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.007089 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.856235 B = 3948.761435 C = 4223.462748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.119 3.881 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.205 3.795 14 H -0.008 1.008 15 C -0.554 4.554 16 H 0.061 0.939 17 C 0.027 3.973 18 N -0.894 5.894 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.268 1.268 23 O -0.365 6.365 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 2.911 -14.400 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.148 4.148 4 C 0.079 3.921 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.152 4.152 10 C -0.133 4.133 11 C -0.177 4.177 12 C -0.179 4.179 13 C 0.150 3.850 14 H 0.009 0.991 15 C -0.591 4.591 16 H 0.080 0.920 17 C -0.176 4.176 18 N -0.531 5.531 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.193 1.193 23 O -0.284 6.284 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.885 2.547 -14.311 14.658 hybrid contribution 0.399 -0.468 1.402 1.531 sum -1.486 2.079 -12.909 13.160 Atomic orbital electron populations 1.21707 0.94637 1.01736 1.01750 1.21364 0.96368 0.96721 1.00716 1.21896 0.94199 0.97416 1.01271 1.21019 0.93280 0.91732 0.86097 1.19905 0.98860 0.94013 0.94728 1.21258 1.00158 1.00644 0.92240 1.21438 0.98959 0.94806 0.98654 1.21433 1.00141 0.94814 0.98033 1.21352 0.99956 1.00605 0.93245 1.20998 0.99425 0.94911 0.98004 1.23122 1.00511 0.95708 0.98348 1.23080 0.99569 0.99342 0.95916 1.20448 0.92898 0.84630 0.87074 0.99071 1.21394 1.05381 1.15347 1.17005 0.92045 1.25876 0.96693 0.96206 0.98814 1.70178 1.23831 1.19711 1.39410 0.85604 0.79523 0.77375 0.79388 1.19374 1.20939 1.19251 1.89206 1.85059 1.32840 1.21318 0.93595 0.91252 0.92517 0.94850 0.92312 0.89850 0.93562 0.84172 0.82944 0.83377 0.85244 0.89036 0.89164 0.89625 0.90787 0.92607 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.91 71.98 0.71 -3.51 16 2 C -0.11 -4.26 5.18 30.59 0.16 -4.10 16 3 C -0.11 -4.03 4.21 30.59 0.13 -3.90 16 4 C 0.12 4.77 0.69 -11.17 -0.01 4.76 16 5 C -0.07 -2.70 4.30 -19.86 -0.09 -2.79 16 6 C -0.13 -3.53 8.73 22.27 0.19 -3.34 16 7 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 8 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 9 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 10 C -0.12 -4.37 7.53 22.27 0.17 -4.20 16 11 C -0.14 -4.88 5.75 31.59 0.18 -4.69 16 12 C -0.14 -5.97 6.55 31.90 0.21 -5.76 16 13 C 0.21 10.94 3.11 30.53 0.09 11.04 16 14 H -0.01 -0.48 8.13 -2.39 -0.02 -0.50 16 15 C -0.55 -32.20 8.83 25.60 0.23 -31.97 16 16 H 0.06 3.47 7.78 -2.91 -0.02 3.44 16 17 C 0.03 1.55 5.42 84.66 0.46 2.00 16 18 N -0.89 -54.62 12.94 21.45 0.28 -54.35 16 19 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 O -0.36 -19.16 8.57 -148.98 -1.28 -20.44 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.03 1.55 7.74 -2.39 -0.02 1.53 16 28 H 0.06 2.12 6.18 -2.39 -0.01 2.11 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 1.83 8.13 -2.39 -0.02 1.82 16 31 H 0.14 3.30 6.48 -2.91 -0.02 3.28 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.09 4.13 7.49 -2.91 -0.02 4.11 16 36 H 0.09 2.72 5.81 -2.39 -0.01 2.71 16 37 H 0.09 2.58 7.70 -2.39 -0.02 2.56 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.99 319.43 5.13 -62.85 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.00 Total: 20.51 kcal Atomic # 6 Polarization: -58.83 SS G_CDS: 3.11 Total: -55.72 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.28 Total: -54.35 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.28 Total: -20.44 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.99 5.13 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.526 kcal (2) G-P(sol) polarization free energy of solvation -67.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds