Wall clock time and date at job start Mon Mar 30 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.82978 * 305.56862 * 4 3 2 6 6 C 1.38238 * 119.99983 * 269.03122 * 5 4 3 7 7 C 1.38234 * 119.99878 * 179.76429 * 6 5 4 8 8 C 1.38231 * 119.99843 * 0.48254 * 7 6 5 9 9 C 1.38232 * 119.99974 * 359.78872 * 8 7 6 10 10 C 1.38230 * 119.99894 * 89.29595 * 5 4 3 11 11 C 1.54385 * 109.82902 * 184.58766 * 4 3 2 12 12 C 1.55303 * 102.25278 * 261.84532 * 11 4 3 13 13 C 1.54939 * 100.94415 * 325.86726 * 12 11 4 14 14 H 1.09003 * 110.30930 * 277.52437 * 13 12 11 15 15 C 1.50703 * 110.31238 * 155.36040 * 13 12 11 16 16 H 1.07997 * 119.99862 * 2.82909 * 15 13 12 17 17 C 1.37877 * 119.99879 * 182.83298 * 15 13 12 18 18 N 1.31513 * 120.00323 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 119.99575 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46937 * 120.00475 * 19 17 15 22 22 H 1.48499 * 109.46817 * 239.99872 * 19 17 15 23 23 O 1.43236 * 109.83251 * 66.45868 * 4 3 2 24 24 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 26 26 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 30 30 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 31 31 H 1.08002 * 119.99787 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99862 * 180.24794 * 7 6 5 33 33 H 1.08002 * 119.99755 * 179.76868 * 8 7 6 34 34 H 1.08000 * 120.00043 * 179.97438 * 9 8 7 35 35 H 1.07997 * 120.00489 * 0.02562 * 10 5 4 36 36 H 1.09001 * 110.84862 * 20.03469 * 11 4 3 37 37 H 1.09003 * 110.84860 * 143.65493 * 11 4 3 38 38 H 1.09004 * 111.12508 * 207.94191 * 12 11 4 39 39 H 1.09005 * 111.12781 * 83.78279 * 12 11 4 40 40 H 0.97004 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0806 0.6182 1.1541 6 6 4.3336 1.2178 2.3737 7 6 4.7974 0.4606 3.4332 8 6 5.0178 -0.8942 3.2702 9 6 4.7701 -1.4927 2.0490 10 6 4.3013 -0.7366 0.9910 11 6 4.0935 2.8903 0.1168 12 6 4.4085 3.2465 -1.3616 13 6 4.8813 1.8731 -1.9008 14 1 5.9305 1.7105 -1.6539 15 6 4.6762 1.7976 -3.3919 16 1 4.2939 2.6534 -3.9283 17 6 4.9764 0.6360 -4.0712 18 7 5.4423 -0.4061 -3.4180 19 14 4.7214 0.5423 -5.9194 20 1 4.1909 1.8387 -6.4122 21 1 6.0175 0.2524 -6.5838 22 1 3.7526 -0.5391 -6.2312 23 8 4.0564 0.9043 -1.2343 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6765 1.9563 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 4.1656 2.2772 2.4997 32 1 4.9913 0.9284 4.3871 33 1 5.3837 -1.4851 4.0969 34 1 4.9426 -2.5512 1.9215 35 1 4.1081 -1.2043 0.0369 36 1 3.3247 3.5498 0.5194 37 1 4.9967 2.9284 0.7259 38 1 5.2040 3.9889 -1.4260 39 1 3.5136 3.5862 -1.8831 40 1 5.6532 -1.2235 -3.8959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379803316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:06 Heat of formation + Delta-G solvation = -37.693820 kcal Electronic energy + Delta-G solvation = -20288.096872 eV Core-core repulsion = 17452.952107 eV Total energy + Delta-G solvation = -2835.144765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70093 -37.56043 -34.35714 -32.52435 -31.45165 -30.80844 -30.16686 -28.26890 -26.25831 -23.88268 -22.39988 -21.86626 -20.95571 -20.07932 -19.06731 -16.56610 -16.49119 -15.19910 -15.10531 -14.65798 -14.39348 -14.15419 -14.00702 -13.16899 -12.97380 -12.84953 -12.69432 -12.27256 -11.95787 -11.76741 -11.66675 -11.46150 -10.99447 -10.96189 -10.87895 -10.71298 -10.48918 -10.32086 -10.21057 -10.02494 -9.79648 -9.58371 -9.06597 -8.56554 -8.44462 -8.18592 -7.89868 -5.98613 -4.11192 1.81099 1.88428 3.30354 3.38569 3.41856 4.25673 4.43618 4.86338 5.20848 5.29493 5.32974 5.38896 5.46486 5.51020 5.58085 5.60303 5.66521 5.88152 5.93372 5.97844 6.09616 6.18810 6.24787 6.30771 6.35570 6.39185 6.47437 6.52094 6.58879 6.63543 6.75400 6.81326 6.83670 6.92556 6.95801 7.06731 7.22165 7.49269 7.62732 7.90985 8.28877 8.65915 9.05922 9.59412 11.08398 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.006907 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.871564 B = 4052.873227 C = 4230.899885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.105 4.105 4 C 0.136 3.864 5 C -0.069 4.069 6 C -0.122 4.122 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.129 4.129 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.212 3.788 14 H 0.025 0.975 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.079 3.921 18 N -0.860 5.860 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.337 6.337 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 1.502 11.113 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.143 4.143 4 C 0.095 3.905 5 C -0.069 4.069 6 C -0.140 4.140 7 C -0.150 4.150 8 C -0.151 4.151 9 C -0.147 4.147 10 C -0.100 4.100 11 C -0.184 4.184 12 C -0.185 4.185 13 C 0.157 3.843 14 H 0.043 0.957 15 C -0.570 4.570 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.497 5.497 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.257 6.257 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.444 1.116 11.014 11.929 hybrid contribution 0.004 0.049 -0.841 0.842 sum -4.440 1.165 10.173 11.161 Atomic orbital electron populations 1.21773 0.96975 1.00836 1.01012 1.21531 0.94382 0.97299 1.02750 1.21781 0.94240 0.97185 1.01107 1.20718 0.92840 0.90657 0.86319 1.20339 0.97311 0.94643 0.94602 1.21006 1.00566 0.99520 0.92952 1.20965 1.01361 0.94265 0.98406 1.21006 1.01724 0.95023 0.97372 1.21151 1.00443 0.99710 0.93399 1.21202 0.96268 0.93677 0.98839 1.23217 1.00530 0.96022 0.98674 1.23325 1.00908 1.00755 0.93482 1.20506 0.90441 0.81490 0.91893 0.95713 1.21128 1.45849 0.99200 0.90801 0.91976 1.25045 0.93881 0.95693 0.98021 1.70050 1.41663 1.02651 1.35293 0.86625 0.77836 0.78164 0.85849 1.19701 1.20977 1.20901 1.88843 1.67365 1.40568 1.28898 0.93576 0.93000 0.93370 0.90694 0.92312 0.91319 0.92755 0.86544 0.86912 0.87004 0.86670 0.84831 0.91712 0.91404 0.92101 0.91610 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.08 5.05 -26.73 -0.13 -2.22 16 3 C -0.11 -1.85 4.39 -26.73 -0.12 -1.97 16 4 C 0.14 2.66 0.78 -91.05 -0.07 2.59 16 5 C -0.07 -1.27 4.11 -104.62 -0.43 -1.69 16 6 C -0.12 -1.95 8.75 -39.58 -0.35 -2.30 16 7 C -0.13 -1.90 10.05 -39.59 -0.40 -2.29 16 8 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 9 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 10 C -0.08 -1.55 7.49 -39.59 -0.30 -1.84 16 11 C -0.15 -2.63 5.04 -24.78 -0.13 -2.76 16 12 C -0.15 -3.03 6.53 -24.49 -0.16 -3.19 16 13 C 0.21 5.41 3.27 -26.86 -0.09 5.32 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.53 -14.78 8.81 -34.44 -0.30 -15.08 16 16 H 0.06 1.69 7.77 -52.49 -0.41 1.28 16 17 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 18 N -0.86 -25.19 12.93 55.43 0.72 -24.47 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 O -0.34 -8.36 8.56 -35.23 -0.30 -8.67 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.48 7.88 -51.93 -0.41 1.08 16 28 H 0.06 0.99 6.15 -51.93 -0.32 0.67 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.12 1.65 6.82 -52.49 -0.36 1.29 16 32 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.82 7.50 -52.49 -0.39 2.43 16 36 H 0.06 0.99 7.79 -51.93 -0.40 0.59 16 37 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -29.52 320.26 -9.20 -38.72 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.43 Total: 3.15 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.99 Total: -29.83 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.72 Total: -24.47 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.30 Total: -8.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.52 -9.20 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.025 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds