Wall clock time and date at job start Mon Mar 30 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.82978 * 305.56862 * 4 3 2 6 6 C 1.38238 * 119.99983 * 269.03122 * 5 4 3 7 7 C 1.38234 * 119.99878 * 179.76429 * 6 5 4 8 8 C 1.38231 * 119.99843 * 0.48254 * 7 6 5 9 9 C 1.38232 * 119.99974 * 359.78872 * 8 7 6 10 10 C 1.38230 * 119.99894 * 89.29595 * 5 4 3 11 11 C 1.54385 * 109.82902 * 184.58766 * 4 3 2 12 12 C 1.55303 * 102.25278 * 261.84532 * 11 4 3 13 13 C 1.54939 * 100.94415 * 325.86726 * 12 11 4 14 14 H 1.09003 * 110.30930 * 277.52437 * 13 12 11 15 15 C 1.50703 * 110.31238 * 155.36040 * 13 12 11 16 16 H 1.07997 * 119.99862 * 2.82909 * 15 13 12 17 17 C 1.37877 * 119.99879 * 182.83298 * 15 13 12 18 18 N 1.31513 * 120.00323 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 119.99575 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46937 * 120.00475 * 19 17 15 22 22 H 1.48499 * 109.46817 * 239.99872 * 19 17 15 23 23 O 1.43236 * 109.83251 * 66.45868 * 4 3 2 24 24 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 26 26 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 30 30 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 31 31 H 1.08002 * 119.99787 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99862 * 180.24794 * 7 6 5 33 33 H 1.08002 * 119.99755 * 179.76868 * 8 7 6 34 34 H 1.08000 * 120.00043 * 179.97438 * 9 8 7 35 35 H 1.07997 * 120.00489 * 0.02562 * 10 5 4 36 36 H 1.09001 * 110.84862 * 20.03469 * 11 4 3 37 37 H 1.09003 * 110.84860 * 143.65493 * 11 4 3 38 38 H 1.09004 * 111.12508 * 207.94191 * 12 11 4 39 39 H 1.09005 * 111.12781 * 83.78279 * 12 11 4 40 40 H 0.97004 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0806 0.6182 1.1541 6 6 4.3336 1.2178 2.3737 7 6 4.7974 0.4606 3.4332 8 6 5.0178 -0.8942 3.2702 9 6 4.7701 -1.4927 2.0490 10 6 4.3013 -0.7366 0.9910 11 6 4.0935 2.8903 0.1168 12 6 4.4085 3.2465 -1.3616 13 6 4.8813 1.8731 -1.9008 14 1 5.9305 1.7105 -1.6539 15 6 4.6762 1.7976 -3.3919 16 1 4.2939 2.6534 -3.9283 17 6 4.9764 0.6360 -4.0712 18 7 5.4423 -0.4061 -3.4180 19 14 4.7214 0.5423 -5.9194 20 1 4.1909 1.8387 -6.4122 21 1 6.0175 0.2524 -6.5838 22 1 3.7526 -0.5391 -6.2312 23 8 4.0564 0.9043 -1.2343 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6765 1.9563 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 4.1656 2.2772 2.4997 32 1 4.9913 0.9284 4.3871 33 1 5.3837 -1.4851 4.0969 34 1 4.9426 -2.5512 1.9215 35 1 4.1081 -1.2043 0.0369 36 1 3.3247 3.5498 0.5194 37 1 4.9967 2.9284 0.7259 38 1 5.2040 3.9889 -1.4260 39 1 3.5136 3.5862 -1.8831 40 1 5.6532 -1.2235 -3.8959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379803316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:06 Heat of formation + Delta-G solvation = -52.865568 kcal Electronic energy + Delta-G solvation = -20288.754768 eV Core-core repulsion = 17452.952107 eV Total energy + Delta-G solvation = -2835.802662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16345 -39.01850 -35.87694 -34.48164 -33.02515 -32.30449 -31.49940 -29.79421 -27.96398 -25.53228 -23.70348 -23.39778 -22.32187 -21.76946 -20.51387 -18.60378 -17.87903 -16.81625 -16.65623 -16.41698 -15.77119 -15.57799 -15.45422 -14.63824 -14.53522 -14.25251 -14.09163 -13.81310 -13.64559 -13.28784 -12.98305 -12.87246 -12.83610 -12.43353 -12.37206 -12.30507 -12.11534 -12.01485 -11.71164 -11.55958 -11.26177 -11.13614 -10.92061 -10.69412 -9.80271 -9.67958 -9.47055 -8.12785 -6.33008 0.56284 0.62207 1.38022 1.39353 1.51374 2.40240 2.98887 3.06042 3.53300 3.79436 3.95773 4.02964 4.19416 4.23118 4.26181 4.31670 4.38646 4.46367 4.56923 4.71668 4.75452 4.81904 4.86853 4.92460 4.95026 4.96264 5.07143 5.14702 5.16362 5.23293 5.27633 5.35586 5.48051 5.53498 5.59750 5.68371 5.73562 5.78769 5.90903 6.21126 6.24082 6.64772 7.13719 7.43053 8.94593 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.006907 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.871564 B = 4052.873227 C = 4230.899885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.101 4.101 4 C 0.122 3.878 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.124 4.124 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.111 4.111 11 C -0.134 4.134 12 C -0.139 4.139 13 C 0.205 3.795 14 H -0.018 1.018 15 C -0.552 4.552 16 H 0.063 0.937 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.283 1.283 23 O -0.368 6.368 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 2.887 13.408 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.139 4.139 4 C 0.081 3.919 5 C -0.088 4.088 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.145 4.145 9 C -0.155 4.155 10 C -0.129 4.129 11 C -0.172 4.172 12 C -0.177 4.177 13 C 0.149 3.851 14 H 0.000 1.000 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.781 3.219 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.208 1.208 23 O -0.288 6.288 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.296 2.515 13.313 14.547 hybrid contribution 0.301 -0.420 -1.455 1.544 sum -4.995 2.095 11.858 13.036 Atomic orbital electron populations 1.21725 0.94409 1.01796 1.02027 1.21417 0.96529 0.96810 1.00575 1.21765 0.92920 0.97350 1.01823 1.21066 0.94088 0.91834 0.84871 1.20291 0.98853 0.94248 0.95417 1.21258 1.00097 1.00790 0.92106 1.21434 0.99232 0.94098 0.99372 1.21411 1.00245 0.95673 0.97199 1.21341 1.00201 1.00323 0.93633 1.20988 0.99115 0.94682 0.98152 1.23204 1.01885 0.95270 0.96813 1.23193 1.01128 0.98102 0.95266 1.20322 0.88716 0.84583 0.91470 1.00033 1.21538 1.45518 0.99312 0.92573 0.91841 1.25904 0.93635 0.95347 1.02843 1.70203 1.43043 1.03188 1.37133 0.85552 0.77859 0.78384 0.80074 1.18540 1.20260 1.20849 1.88769 1.67208 1.41340 1.31491 0.91279 0.93142 0.92541 0.95088 0.92386 0.92696 0.89530 0.84261 0.83027 0.83504 0.85555 0.89152 0.88080 0.90695 0.90745 0.91525 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.12 -4.05 5.05 30.60 0.15 -3.90 16 3 C -0.10 -3.50 4.39 30.60 0.13 -3.36 16 4 C 0.12 4.81 0.78 -11.07 -0.01 4.80 16 5 C -0.09 -3.23 4.11 -19.87 -0.08 -3.31 16 6 C -0.12 -3.63 8.75 22.27 0.19 -3.43 16 7 C -0.12 -3.06 10.05 22.27 0.22 -2.83 16 8 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 9 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 10 C -0.11 -4.39 7.49 22.27 0.17 -4.22 16 11 C -0.13 -4.60 5.04 31.86 0.16 -4.44 16 12 C -0.14 -5.73 6.53 32.05 0.21 -5.52 16 13 C 0.20 10.97 3.27 30.51 0.10 11.06 16 14 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 15 C -0.55 -31.86 8.81 25.60 0.23 -31.64 16 16 H 0.06 3.53 7.77 -2.91 -0.02 3.51 16 17 C 0.02 1.44 5.42 84.65 0.46 1.90 16 18 N -0.90 -55.54 12.93 21.45 0.28 -55.26 16 19 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 O -0.37 -19.34 8.56 -148.98 -1.27 -20.61 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.03 1.32 7.88 -2.39 -0.02 1.30 16 28 H 0.06 2.01 6.15 -2.39 -0.01 2.00 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.42 8.09 -2.39 -0.02 2.40 16 31 H 0.14 3.35 6.82 -2.91 -0.02 3.33 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.09 4.27 7.50 -2.91 -0.02 4.25 16 36 H 0.10 2.73 7.79 -2.39 -0.02 2.71 16 37 H 0.07 2.45 6.86 -2.39 -0.02 2.43 16 38 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 39 H 0.07 2.70 8.05 -2.38 -0.02 2.68 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.75 320.26 5.12 -63.63 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.99 Total: 20.43 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 3.10 Total: -55.31 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.27 Total: -20.61 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -68.75 5.12 -63.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.768 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds