Wall clock time and date at job start Mon Mar 30 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.86992 * 305.69622 * 4 3 2 6 6 C 1.38233 * 119.99996 * 269.03079 * 5 4 3 7 7 C 1.38241 * 120.00101 * 179.76334 * 6 5 4 8 8 C 1.38243 * 119.99548 * 0.48274 * 7 6 5 9 9 C 1.38234 * 119.99878 * 359.79387 * 8 7 6 10 10 C 1.38232 * 119.99858 * 89.29590 * 5 4 3 11 11 C 1.54103 * 109.87775 * 184.69524 * 4 3 2 12 12 C 1.55152 * 104.02189 * 242.63438 * 11 4 3 13 13 C 1.54991 * 102.14861 * 20.78371 * 12 11 4 14 14 H 1.09000 * 110.62001 * 81.52761 * 13 12 11 15 15 C 1.50703 * 110.61878 * 204.52660 * 13 12 11 16 16 H 1.07995 * 119.99987 * 355.52619 * 15 13 12 17 17 C 1.37874 * 119.99728 * 175.52089 * 15 13 12 18 18 N 1.31510 * 120.00425 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99891 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46941 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47494 * 119.99967 * 19 17 15 22 22 H 1.48497 * 109.47028 * 240.00555 * 19 17 15 23 23 O 1.43742 * 109.88351 * 66.70241 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08003 * 120.00174 * 0.02562 * 6 5 4 32 32 H 1.07992 * 120.00037 * 180.25192 * 7 6 5 33 33 H 1.07994 * 119.99613 * 179.76873 * 8 7 6 34 34 H 1.07998 * 119.99392 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.00194 * 0.02562 * 10 5 4 36 36 H 1.08999 * 110.48718 * 1.27232 * 11 4 3 37 37 H 1.08998 * 110.48863 * 123.92984 * 11 4 3 38 38 H 1.09004 * 110.83771 * 262.58205 * 12 11 4 39 39 H 1.09001 * 110.95859 * 139.03707 * 12 11 4 40 40 H 0.97004 * 120.00220 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0826 0.6153 1.1501 6 6 4.3371 1.2119 2.3708 7 6 4.8028 0.4523 3.4277 8 6 5.0234 -0.9022 3.2610 9 6 4.7743 -1.4977 2.0386 10 6 4.3036 -0.7390 0.9832 11 6 4.0940 2.8868 0.1180 12 6 4.8720 3.1142 -1.2050 13 6 4.2673 2.0275 -2.1300 14 1 3.3204 2.3654 -2.5511 15 6 5.2366 1.6631 -3.2248 16 1 6.1699 2.1981 -3.3199 17 6 4.9321 0.6464 -4.1049 18 7 3.7954 -0.0049 -3.9894 19 14 6.1339 0.1941 -5.4615 20 1 7.3294 1.0711 -5.3764 21 1 6.5472 -1.2235 -5.3045 22 1 5.4805 0.3759 -6.7826 23 8 4.0583 0.9080 -1.2424 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.1682 2.2708 2.5000 32 1 4.9977 0.9176 4.3825 33 1 5.3907 -1.4950 4.0856 34 1 4.9470 -2.5558 1.9083 35 1 4.1092 -1.2043 0.0281 36 1 3.2638 3.5884 0.1988 37 1 4.7601 2.9817 0.9755 38 1 5.9399 2.9512 -1.0597 39 1 4.6832 4.1118 -1.6017 40 1 3.5810 -0.7199 -4.6088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379803318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:09 Heat of formation + Delta-G solvation = -35.849921 kcal Electronic energy + Delta-G solvation = -20284.578098 eV Core-core repulsion = 17449.513290 eV Total energy + Delta-G solvation = -2835.064808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73165 -37.60218 -34.25190 -32.54195 -31.50988 -30.79529 -30.17296 -28.20916 -26.32200 -23.90360 -22.51565 -21.85701 -21.09544 -19.77778 -19.04843 -16.92260 -16.18933 -15.40098 -14.94241 -14.53208 -14.35697 -14.27597 -13.76313 -13.70271 -13.01837 -12.80904 -12.57138 -12.28153 -12.08245 -11.76551 -11.54111 -11.48499 -11.00745 -10.94329 -10.83835 -10.61135 -10.48563 -10.31969 -10.12839 -9.99814 -9.78003 -9.57486 -9.05184 -8.60914 -8.49307 -8.23872 -7.97554 -6.00953 -4.12645 1.76483 1.83086 3.30021 3.38209 3.41849 4.20688 4.42709 4.86983 5.18672 5.29791 5.31319 5.34465 5.48594 5.55197 5.61102 5.65545 5.70755 5.84390 5.91011 6.00528 6.04126 6.22587 6.27512 6.32252 6.38418 6.39866 6.47590 6.51120 6.60423 6.67613 6.78922 6.80683 6.83180 6.89982 6.99897 7.07577 7.18172 7.43577 7.54567 7.89739 8.25113 8.59995 8.99388 9.57425 11.06449 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.007057 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.174668 B = 3966.785147 C = 4233.877016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.131 3.869 5 C -0.054 4.054 6 C -0.123 4.123 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.128 4.128 10 C -0.086 4.086 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.211 3.789 14 H 0.025 0.975 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.079 3.921 18 N -0.861 5.861 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.334 6.334 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 0.872 11.830 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.153 4.153 4 C 0.090 3.910 5 C -0.054 4.054 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.104 4.104 11 C -0.188 4.188 12 C -0.185 4.185 13 C 0.156 3.844 14 H 0.043 0.957 15 C -0.566 4.566 16 H 0.082 0.918 17 C -0.127 4.127 18 N -0.497 5.497 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.253 6.253 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.488 0.513 11.700 11.973 hybrid contribution 0.589 -0.100 -0.634 0.871 sum -1.899 0.413 11.066 11.235 Atomic orbital electron populations 1.21755 0.97008 1.00788 1.00924 1.21521 0.94418 0.97170 1.02796 1.21936 0.94937 0.97376 1.01026 1.20729 0.92383 0.90956 0.86949 1.19954 0.97003 0.94311 0.94103 1.21034 1.00548 0.99625 0.92897 1.20976 1.01166 0.94232 0.98408 1.21013 1.01712 0.95047 0.97352 1.21148 1.00420 0.99679 0.93403 1.21188 0.96649 0.93679 0.98903 1.23195 0.99822 0.96312 0.99451 1.23263 1.00017 1.00377 0.94864 1.20636 0.94627 0.81744 0.87370 0.95718 1.21021 1.05044 1.19556 1.10999 0.91840 1.25042 0.94985 0.95655 0.97031 1.70040 1.21969 1.21558 1.36117 0.86599 0.81499 0.78473 0.81773 1.19675 1.20885 1.20942 1.89281 1.84483 1.31931 1.19634 0.92959 0.93402 0.93737 0.90245 0.92553 0.91456 0.92939 0.86258 0.86799 0.86929 0.86622 0.84987 0.91889 0.91407 0.91818 0.92381 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.15 5.05 -26.73 -0.13 -2.28 16 3 C -0.11 -2.08 4.25 -26.73 -0.11 -2.19 16 4 C 0.13 2.59 0.70 -91.19 -0.06 2.52 16 5 C -0.05 -0.98 4.14 -104.62 -0.43 -1.41 16 6 C -0.12 -1.93 8.73 -39.58 -0.35 -2.28 16 7 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 8 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 9 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 10 C -0.09 -1.59 7.49 -39.58 -0.30 -1.89 16 11 C -0.15 -2.72 5.78 -25.02 -0.14 -2.87 16 12 C -0.15 -3.10 6.56 -24.54 -0.16 -3.26 16 13 C 0.21 5.38 3.08 -26.83 -0.08 5.30 16 14 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 15 C -0.53 -14.76 8.83 -34.44 -0.30 -15.07 16 16 H 0.06 1.74 7.78 -52.49 -0.41 1.33 16 17 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -24.97 12.95 55.43 0.72 -24.25 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 O -0.33 -8.32 8.80 -35.23 -0.31 -8.63 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.66 7.89 -51.93 -0.41 1.25 16 28 H 0.06 0.97 6.15 -51.93 -0.32 0.65 16 29 H 0.07 1.30 8.00 -51.93 -0.42 0.89 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.12 1.67 6.43 -52.48 -0.34 1.33 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.71 7.51 -52.48 -0.39 2.31 16 36 H 0.06 1.02 7.70 -51.93 -0.40 0.62 16 37 H 0.07 1.12 5.76 -51.93 -0.30 0.82 16 38 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -29.42 319.18 -9.14 -38.56 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.34 Total: 3.20 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -3.00 Total: -30.02 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.72 Total: -24.25 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.31 Total: -8.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.42 -9.14 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.711 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds