Wall clock time and date at job start Mon Mar 30 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.86992 * 305.69622 * 4 3 2 6 6 C 1.38233 * 119.99996 * 269.03079 * 5 4 3 7 7 C 1.38241 * 120.00101 * 179.76334 * 6 5 4 8 8 C 1.38243 * 119.99548 * 0.48274 * 7 6 5 9 9 C 1.38234 * 119.99878 * 359.79387 * 8 7 6 10 10 C 1.38232 * 119.99858 * 89.29590 * 5 4 3 11 11 C 1.54103 * 109.87775 * 184.69524 * 4 3 2 12 12 C 1.55152 * 104.02189 * 242.63438 * 11 4 3 13 13 C 1.54991 * 102.14861 * 20.78371 * 12 11 4 14 14 H 1.09000 * 110.62001 * 81.52761 * 13 12 11 15 15 C 1.50703 * 110.61878 * 204.52660 * 13 12 11 16 16 H 1.07995 * 119.99987 * 355.52619 * 15 13 12 17 17 C 1.37874 * 119.99728 * 175.52089 * 15 13 12 18 18 N 1.31510 * 120.00425 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99891 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46941 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47494 * 119.99967 * 19 17 15 22 22 H 1.48497 * 109.47028 * 240.00555 * 19 17 15 23 23 O 1.43742 * 109.88351 * 66.70241 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08003 * 120.00174 * 0.02562 * 6 5 4 32 32 H 1.07992 * 120.00037 * 180.25192 * 7 6 5 33 33 H 1.07994 * 119.99613 * 179.76873 * 8 7 6 34 34 H 1.07998 * 119.99392 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.00194 * 0.02562 * 10 5 4 36 36 H 1.08999 * 110.48718 * 1.27232 * 11 4 3 37 37 H 1.08998 * 110.48863 * 123.92984 * 11 4 3 38 38 H 1.09004 * 110.83771 * 262.58205 * 12 11 4 39 39 H 1.09001 * 110.95859 * 139.03707 * 12 11 4 40 40 H 0.97004 * 120.00220 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0826 0.6153 1.1501 6 6 4.3371 1.2119 2.3708 7 6 4.8028 0.4523 3.4277 8 6 5.0234 -0.9022 3.2610 9 6 4.7743 -1.4977 2.0386 10 6 4.3036 -0.7390 0.9832 11 6 4.0940 2.8868 0.1180 12 6 4.8720 3.1142 -1.2050 13 6 4.2673 2.0275 -2.1300 14 1 3.3204 2.3654 -2.5511 15 6 5.2366 1.6631 -3.2248 16 1 6.1699 2.1981 -3.3199 17 6 4.9321 0.6464 -4.1049 18 7 3.7954 -0.0049 -3.9894 19 14 6.1339 0.1941 -5.4615 20 1 7.3294 1.0711 -5.3764 21 1 6.5472 -1.2235 -5.3045 22 1 5.4805 0.3759 -6.7826 23 8 4.0583 0.9080 -1.2424 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.1682 2.2708 2.5000 32 1 4.9977 0.9176 4.3825 33 1 5.3907 -1.4950 4.0856 34 1 4.9470 -2.5558 1.9083 35 1 4.1092 -1.2043 0.0281 36 1 3.2638 3.5884 0.1988 37 1 4.7601 2.9817 0.9755 38 1 5.9399 2.9512 -1.0597 39 1 4.6832 4.1118 -1.6017 40 1 3.5810 -0.7199 -4.6088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379803318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:08 Heat of formation + Delta-G solvation = -50.943253 kcal Electronic energy + Delta-G solvation = -20285.232594 eV Core-core repulsion = 17449.513290 eV Total energy + Delta-G solvation = -2835.719304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18503 -39.04418 -35.81438 -34.50054 -33.07078 -32.28350 -31.50116 -29.73165 -28.05316 -25.59453 -23.79563 -23.36821 -22.51597 -21.45029 -20.49396 -18.75844 -17.76188 -16.96600 -16.63550 -16.24234 -15.73903 -15.63275 -15.26424 -15.19867 -14.46665 -14.15753 -14.12685 -13.86950 -13.62461 -13.30667 -13.04792 -12.91788 -12.77025 -12.48630 -12.30874 -12.21500 -12.14015 -11.95669 -11.71167 -11.49772 -11.28559 -11.16538 -10.95572 -10.70517 -9.89878 -9.68671 -9.47038 -8.14935 -6.34414 0.55363 0.60953 1.37460 1.38950 1.50897 2.39367 2.97451 3.06190 3.53930 3.80387 3.96049 4.06910 4.17952 4.22937 4.27125 4.29003 4.38206 4.43627 4.54476 4.70053 4.74059 4.79450 4.87444 4.88660 4.93187 4.97897 5.08019 5.10619 5.17481 5.22731 5.27052 5.35065 5.46042 5.50791 5.57759 5.68076 5.73967 5.75724 5.88491 6.19122 6.22668 6.61674 7.02408 7.40132 8.92622 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.007057 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.174668 B = 3966.785147 C = 4233.877016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.111 4.111 4 C 0.119 3.881 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.205 3.795 14 H -0.008 1.008 15 C -0.553 4.553 16 H 0.062 0.938 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.275 1.275 23 O -0.366 6.366 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 1.620 14.731 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.149 4.149 4 C 0.078 3.922 5 C -0.074 4.074 6 C -0.143 4.143 7 C -0.138 4.138 8 C -0.144 4.144 9 C -0.152 4.152 10 C -0.133 4.133 11 C -0.177 4.177 12 C -0.179 4.179 13 C 0.149 3.851 14 H 0.009 0.991 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.176 4.176 18 N -0.532 5.532 19 Si 0.781 3.219 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.200 1.200 23 O -0.285 6.285 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.838 1.271 14.607 14.777 hybrid contribution 0.382 -0.365 -1.450 1.543 sum -1.456 0.906 13.157 13.268 Atomic orbital electron populations 1.21712 0.94639 1.01787 1.01757 1.21386 0.96411 0.96642 1.00647 1.21905 0.94218 0.97464 1.01263 1.21029 0.93271 0.92238 0.85618 1.19893 0.98792 0.94014 0.94734 1.21266 1.00158 1.00851 0.92045 1.21439 0.99007 0.94100 0.99296 1.21431 1.00120 0.95636 0.97222 1.21347 0.99969 1.00354 0.93503 1.20992 0.99400 0.94536 0.98365 1.23194 1.00536 0.95561 0.98428 1.23136 0.99576 0.99559 0.95624 1.20459 0.92919 0.83472 0.88249 0.99062 1.21426 1.05378 1.19757 1.12439 0.92012 1.25881 0.96685 0.95599 0.99469 1.70183 1.23791 1.22094 1.37148 0.85547 0.79419 0.77982 0.78912 1.18751 1.20842 1.19995 1.89207 1.85127 1.32431 1.21770 0.93677 0.92405 0.91230 0.95014 0.92093 0.93724 0.89763 0.84145 0.82939 0.83381 0.85268 0.89100 0.89593 0.89079 0.92602 0.90784 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.48 16 2 C -0.11 -4.17 5.05 30.59 0.15 -4.01 16 3 C -0.11 -4.06 4.25 30.59 0.13 -3.93 16 4 C 0.12 4.76 0.70 -11.17 -0.01 4.75 16 5 C -0.07 -2.67 4.14 -19.87 -0.08 -2.76 16 6 C -0.13 -3.53 8.73 22.27 0.19 -3.34 16 7 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 8 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 9 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 10 C -0.11 -4.35 7.49 22.27 0.17 -4.18 16 11 C -0.14 -4.88 5.78 31.70 0.18 -4.70 16 12 C -0.14 -5.96 6.56 32.01 0.21 -5.75 16 13 C 0.20 10.93 3.08 30.53 0.09 11.03 16 14 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 15 C -0.55 -32.15 8.83 25.60 0.23 -31.93 16 16 H 0.06 3.49 7.78 -2.91 -0.02 3.47 16 17 C 0.03 1.52 5.42 84.65 0.46 1.97 16 18 N -0.89 -54.77 12.95 21.45 0.28 -54.49 16 19 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 O -0.37 -19.28 8.80 -148.98 -1.31 -20.59 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.44 7.89 -2.39 -0.02 1.42 16 28 H 0.06 2.15 6.15 -2.39 -0.01 2.14 16 29 H 0.04 1.80 8.00 -2.39 -0.02 1.78 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.14 3.29 6.43 -2.91 -0.02 3.28 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.09 4.11 7.51 -2.91 -0.02 4.09 16 36 H 0.09 2.58 7.70 -2.39 -0.02 2.56 16 37 H 0.09 2.74 5.76 -2.39 -0.01 2.73 16 38 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 39 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.24 319.18 5.10 -63.14 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.00 Total: 20.32 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 3.11 Total: -55.56 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.31 Total: -20.59 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.24 5.10 -63.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.194 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds