Wall clock time and date at job start Mon Mar 30 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46996 * 2 1 4 4 C 1.53000 * 109.47129 * 119.99758 * 2 1 3 5 5 H 1.09003 * 109.47242 * 299.99957 * 4 2 1 6 6 C 1.53001 * 109.46997 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.46855 * 60.00335 * 4 2 1 8 8 O 1.20753 * 120.00499 * 29.99844 * 7 4 2 9 9 C 1.50701 * 119.99484 * 209.99828 * 7 4 2 10 10 H 1.09005 * 109.47369 * 35.00167 * 9 7 4 11 11 C 1.50695 * 109.47301 * 275.00125 * 9 7 4 12 12 H 1.08003 * 120.00471 * 120.01306 * 11 9 7 13 13 C 1.37888 * 119.99729 * 300.00715 * 11 9 7 14 14 N 1.31509 * 120.00234 * 1.73105 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 181.73063 * 13 11 9 16 16 H 1.48497 * 109.47269 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47220 * 120.00449 * 15 13 11 18 18 H 1.48507 * 109.46678 * 239.99839 * 15 13 11 19 19 C 1.50701 * 109.46926 * 155.00284 * 9 7 4 20 20 C 1.38227 * 120.00267 * 142.40404 * 19 9 7 21 21 C 1.38236 * 120.00269 * 179.97438 * 20 19 9 22 22 C 1.38235 * 119.99968 * 359.97438 * 21 20 19 23 23 C 1.38244 * 119.99756 * 0.06769 * 22 21 20 24 24 C 1.38233 * 120.00024 * 359.88881 * 23 22 21 25 25 H 1.09001 * 109.47424 * 299.99799 * 1 2 3 26 26 H 1.08999 * 109.47288 * 60.00562 * 1 2 3 27 27 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47424 * 240.00201 * 2 1 3 29 29 H 1.09003 * 109.47357 * 60.00053 * 3 2 1 30 30 H 1.09005 * 109.47484 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47137 * 299.99652 * 3 2 1 32 32 H 1.09003 * 109.46878 * 299.99921 * 6 4 2 33 33 H 1.08995 * 109.47304 * 60.00029 * 6 4 2 34 34 H 1.09000 * 109.46761 * 180.02562 * 6 4 2 35 35 H 0.96991 * 120.00153 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.00520 * 359.97333 * 20 19 9 37 37 H 1.07999 * 120.00102 * 179.72318 * 21 20 19 38 38 H 1.07995 * 120.00238 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99478 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99855 * 180.10614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7206 1.2496 7 6 1.5376 -2.1420 1.2492 8 8 1.3364 -2.7113 0.2035 9 6 1.2865 -2.8524 2.5544 10 1 0.9132 -2.1398 3.2900 11 6 2.5730 -3.4598 3.0514 12 1 2.9765 -3.1624 4.0081 13 6 3.2349 -4.3954 2.2848 14 7 2.7618 -4.7326 1.1050 15 14 4.8038 -5.1840 2.9221 16 1 5.1226 -4.6368 4.2653 17 1 4.6156 -6.6538 3.0177 18 1 5.9209 -4.8877 1.9895 19 6 0.2650 -3.9405 2.3456 20 6 0.3911 -5.1442 3.0132 21 6 -0.5462 -6.1422 2.8221 22 6 -1.6099 -5.9361 1.9637 23 6 -1.7356 -4.7325 1.2953 24 6 -0.7987 -3.7343 1.4871 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 -1.2343 0.3596 33 1 3.9329 0.3071 1.2497 34 1 3.9332 -1.2348 2.1394 35 1 3.2272 -5.3910 0.5659 36 1 1.2219 -5.3052 3.6843 37 1 -0.4452 -7.0843 3.3403 38 1 -2.3420 -6.7158 1.8140 39 1 -2.5664 -4.5717 0.6243 40 1 -0.8978 -2.7934 0.9663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:28 Heat of formation + Delta-G solvation = -30.693580 kcal Electronic energy + Delta-G solvation = -20476.582136 eV Core-core repulsion = 17641.740924 eV Total energy + Delta-G solvation = -2834.841212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17545 -37.62477 -35.28170 -33.50470 -30.85577 -30.24016 -29.71780 -27.41382 -26.81640 -24.36471 -23.11702 -21.39750 -20.86372 -19.44785 -18.08602 -16.54473 -15.68482 -15.11361 -14.74746 -14.39786 -14.09287 -13.79783 -13.65756 -13.13226 -12.77506 -12.47283 -12.37417 -12.22945 -11.94194 -11.69043 -11.56476 -11.36823 -11.27159 -10.97861 -10.80819 -10.69592 -10.54066 -10.43051 -10.12786 -10.02041 -9.91902 -9.60467 -9.26975 -8.67843 -7.90858 -7.72008 -7.34866 -6.04103 -4.21298 2.53472 2.58864 3.21648 3.32311 3.33292 3.68835 4.33894 4.90745 5.10826 5.25146 5.30392 5.36888 5.74641 5.83800 5.88732 5.90888 6.00270 6.03255 6.05600 6.09024 6.17548 6.28558 6.32075 6.40775 6.49609 6.60355 6.62143 6.71494 6.76175 6.84683 6.85409 7.02311 7.11185 7.16813 7.28987 7.52218 7.62733 7.74646 7.85230 8.15694 8.29515 8.76785 9.27373 9.43199 10.92975 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.010419 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.571055 B = 2686.848319 C = 4149.170428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.130 4.130 5 H 0.076 0.924 6 C -0.131 4.131 7 C 0.376 3.624 8 O -0.435 6.435 9 C 0.031 3.969 10 H 0.052 0.948 11 C -0.531 4.531 12 H 0.066 0.934 13 C 0.073 3.927 14 N -0.831 5.831 15 Si 0.879 3.121 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.004 4.004 20 C -0.075 4.075 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.116 4.116 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 6.328 0.881 7.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.150 4.150 5 H 0.094 0.906 6 C -0.188 4.188 7 C 0.249 3.751 8 O -0.306 6.306 9 C 0.012 3.988 10 H 0.070 0.930 11 C -0.568 4.568 12 H 0.084 0.916 13 C -0.136 4.136 14 N -0.463 5.463 15 Si 0.706 3.294 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.004 4.004 20 C -0.093 4.093 21 C -0.159 4.159 22 C -0.168 4.168 23 C -0.155 4.155 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.536 5.892 0.117 6.873 hybrid contribution 1.081 -0.606 0.147 1.248 sum -2.454 5.286 0.264 5.834 Atomic orbital electron populations 1.21886 0.95767 1.02243 1.00682 1.20992 0.95413 0.95200 0.98751 1.21883 1.01080 0.96332 1.00933 1.21738 0.97684 0.97541 0.98004 0.90554 1.21635 0.93597 1.00310 1.03294 1.24426 0.73100 0.86039 0.91566 1.90270 1.39727 1.65628 1.34949 1.18369 0.94666 0.92521 0.93257 0.92981 1.20629 1.06853 1.24260 1.05080 0.91620 1.25080 0.97196 0.96471 0.94842 1.70167 1.37559 1.29622 1.08956 0.86720 0.83813 0.79591 0.79228 1.19481 1.20807 1.20955 1.19988 0.92069 0.95857 0.92516 1.21053 0.96774 0.92313 0.99197 1.20989 0.96021 0.98730 1.00176 1.20743 0.99048 0.97122 0.99849 1.20804 0.99422 0.94590 1.00683 1.20917 0.95073 0.98658 0.98771 0.93200 0.93368 0.92030 0.90774 0.93036 0.92547 0.93371 0.93067 0.93446 0.90934 0.92759 0.85806 0.88045 0.88196 0.88126 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.92 37.15 0.33 -1.98 16 2 C -0.09 -1.40 2.16 -90.62 -0.20 -1.59 16 3 C -0.15 -1.92 8.84 37.16 0.33 -1.59 16 4 C -0.13 -2.40 2.25 -91.77 -0.21 -2.61 16 5 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 6 C -0.13 -2.38 8.82 37.16 0.33 -2.05 16 7 C 0.38 8.42 3.02 -29.03 -0.09 8.34 16 8 O -0.43 -11.05 12.26 6.00 0.07 -10.97 16 9 C 0.03 0.72 2.73 -94.08 -0.26 0.46 16 10 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 11 C -0.53 -13.08 6.69 -34.44 -0.23 -13.31 16 12 H 0.07 1.59 7.81 -52.48 -0.41 1.18 16 13 C 0.07 1.86 4.25 -17.82 -0.08 1.78 16 14 N -0.83 -22.79 10.11 55.43 0.56 -22.22 16 15 Si 0.88 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.00 -0.09 4.25 -104.62 -0.44 -0.53 16 20 C -0.08 -1.74 8.35 -39.59 -0.33 -2.07 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 23 C -0.14 -2.78 10.05 -39.58 -0.40 -3.17 16 24 C -0.12 -2.58 8.36 -39.58 -0.33 -2.91 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.10 5.45 -51.93 -0.28 0.81 16 28 H 0.07 1.37 7.86 -51.93 -0.41 0.96 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 34 H 0.07 1.41 7.53 -51.93 -0.39 1.02 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.12 2.93 6.52 -52.48 -0.34 2.59 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.10 2.20 5.74 -52.49 -0.30 1.90 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -28.00 315.15 -8.16 -36.16 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.16 Total: 5.14 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.36 Total: -27.91 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.56 Total: -22.22 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.00 -8.16 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.470 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds