Wall clock time and date at job start Mon Mar 30 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46996 * 2 1 4 4 C 1.53000 * 109.47129 * 119.99758 * 2 1 3 5 5 H 1.09003 * 109.47242 * 299.99957 * 4 2 1 6 6 C 1.53001 * 109.46997 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.46855 * 60.00335 * 4 2 1 8 8 O 1.20753 * 120.00499 * 29.99844 * 7 4 2 9 9 C 1.50701 * 119.99484 * 209.99828 * 7 4 2 10 10 H 1.09005 * 109.47369 * 35.00167 * 9 7 4 11 11 C 1.50695 * 109.47301 * 275.00125 * 9 7 4 12 12 H 1.08003 * 120.00471 * 120.01306 * 11 9 7 13 13 C 1.37888 * 119.99729 * 300.00715 * 11 9 7 14 14 N 1.31509 * 120.00234 * 1.73105 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 181.73063 * 13 11 9 16 16 H 1.48497 * 109.47269 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47220 * 120.00449 * 15 13 11 18 18 H 1.48507 * 109.46678 * 239.99839 * 15 13 11 19 19 C 1.50701 * 109.46926 * 155.00284 * 9 7 4 20 20 C 1.38227 * 120.00267 * 142.40404 * 19 9 7 21 21 C 1.38236 * 120.00269 * 179.97438 * 20 19 9 22 22 C 1.38235 * 119.99968 * 359.97438 * 21 20 19 23 23 C 1.38244 * 119.99756 * 0.06769 * 22 21 20 24 24 C 1.38233 * 120.00024 * 359.88881 * 23 22 21 25 25 H 1.09001 * 109.47424 * 299.99799 * 1 2 3 26 26 H 1.08999 * 109.47288 * 60.00562 * 1 2 3 27 27 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47424 * 240.00201 * 2 1 3 29 29 H 1.09003 * 109.47357 * 60.00053 * 3 2 1 30 30 H 1.09005 * 109.47484 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47137 * 299.99652 * 3 2 1 32 32 H 1.09003 * 109.46878 * 299.99921 * 6 4 2 33 33 H 1.08995 * 109.47304 * 60.00029 * 6 4 2 34 34 H 1.09000 * 109.46761 * 180.02562 * 6 4 2 35 35 H 0.96991 * 120.00153 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.00520 * 359.97333 * 20 19 9 37 37 H 1.07999 * 120.00102 * 179.72318 * 21 20 19 38 38 H 1.07995 * 120.00238 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99478 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99855 * 180.10614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7206 1.2496 7 6 1.5376 -2.1420 1.2492 8 8 1.3364 -2.7113 0.2035 9 6 1.2865 -2.8524 2.5544 10 1 0.9132 -2.1398 3.2900 11 6 2.5730 -3.4598 3.0514 12 1 2.9765 -3.1624 4.0081 13 6 3.2349 -4.3954 2.2848 14 7 2.7618 -4.7326 1.1050 15 14 4.8038 -5.1840 2.9221 16 1 5.1226 -4.6368 4.2653 17 1 4.6156 -6.6538 3.0177 18 1 5.9209 -4.8877 1.9895 19 6 0.2650 -3.9405 2.3456 20 6 0.3911 -5.1442 3.0132 21 6 -0.5462 -6.1422 2.8221 22 6 -1.6099 -5.9361 1.9637 23 6 -1.7356 -4.7325 1.2953 24 6 -0.7987 -3.7343 1.4871 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 -1.2343 0.3596 33 1 3.9329 0.3071 1.2497 34 1 3.9332 -1.2348 2.1394 35 1 3.2272 -5.3910 0.5659 36 1 1.2219 -5.3052 3.6843 37 1 -0.4452 -7.0843 3.3403 38 1 -2.3420 -6.7158 1.8140 39 1 -2.5664 -4.5717 0.6243 40 1 -0.8978 -2.7934 0.9663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:28 Heat of formation + Delta-G solvation = -43.215350 kcal Electronic energy + Delta-G solvation = -20477.125120 eV Core-core repulsion = 17641.740924 eV Total energy + Delta-G solvation = -2835.384197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86637 -39.23706 -36.76899 -35.37847 -32.67800 -31.67124 -31.37826 -29.08855 -28.06247 -26.13941 -24.68813 -23.05601 -22.42643 -20.99027 -19.72474 -18.35991 -17.33582 -16.89586 -16.48945 -15.96761 -15.59623 -15.36814 -15.23739 -14.68123 -14.39934 -14.10542 -13.95071 -13.89492 -13.30710 -13.10332 -13.02671 -12.97545 -12.82390 -12.73099 -12.48874 -12.25841 -12.13093 -11.89688 -11.70501 -11.47477 -11.43439 -11.25258 -11.07338 -10.64327 -9.64022 -9.40764 -9.05228 -8.00723 -6.20727 0.86220 0.93076 1.36968 1.43078 1.50679 1.94152 2.43384 3.22205 3.24926 3.73809 3.91863 4.13012 4.29013 4.34082 4.36692 4.49369 4.59221 4.69213 4.73033 4.74678 4.86159 4.91583 4.96798 5.01265 5.03058 5.10307 5.13369 5.17770 5.24528 5.39628 5.42456 5.50392 5.54860 5.58544 5.64039 5.74737 5.87814 5.95272 6.04054 6.42859 6.52482 6.82280 7.44610 7.54848 8.94350 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.010419 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.571055 B = 2686.848319 C = 4149.170428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.129 4.129 5 H 0.096 0.904 6 C -0.124 4.124 7 C 0.377 3.623 8 O -0.470 6.470 9 C 0.017 3.983 10 H 0.062 0.938 11 C -0.526 4.526 12 H 0.066 0.934 13 C 0.038 3.962 14 N -0.861 5.861 15 Si 0.929 3.071 16 H -0.259 1.259 17 H -0.287 1.287 18 H -0.289 1.289 19 C -0.025 4.025 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 7.364 1.278 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.148 4.148 5 H 0.114 0.886 6 C -0.182 4.182 7 C 0.253 3.747 8 O -0.343 6.343 9 C -0.002 4.002 10 H 0.080 0.920 11 C -0.564 4.564 12 H 0.084 0.916 13 C -0.167 4.167 14 N -0.495 5.495 15 Si 0.755 3.245 16 H -0.183 1.183 17 H -0.213 1.213 18 H -0.215 1.215 19 C -0.025 4.025 20 C -0.118 4.118 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.151 4.151 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.192 6.946 0.546 8.131 hybrid contribution 1.215 -0.931 0.059 1.532 sum -2.977 6.014 0.605 6.738 Atomic orbital electron populations 1.21857 0.95129 1.00838 1.02458 1.20954 0.95987 0.96872 0.96263 1.21828 1.01302 0.93837 1.02559 1.21756 0.97807 0.95217 1.00067 0.88617 1.21580 0.93306 1.02092 1.01175 1.24709 0.71936 0.87572 0.90499 1.90248 1.41230 1.66972 1.35852 1.18548 0.94331 0.93137 0.94230 0.91998 1.20809 1.07071 1.23740 1.04737 0.91623 1.25565 0.99308 0.96974 0.94843 1.70332 1.38642 1.30386 1.10136 0.85940 0.80973 0.78489 0.79059 1.18269 1.21297 1.21504 1.20080 0.92732 0.96229 0.93491 1.21058 0.97460 0.93302 0.99953 1.21304 0.95685 0.99035 1.00315 1.21151 0.99122 0.97684 0.98513 1.21192 0.99597 0.94272 1.00714 1.21028 0.95620 0.99467 0.98944 0.91466 0.91529 0.94987 0.93593 0.91396 0.92157 0.91790 0.95514 0.89681 0.92620 0.93841 0.87411 0.85643 0.84503 0.85253 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.92 71.98 0.64 -3.71 16 2 C -0.08 -2.61 2.16 -10.80 -0.02 -2.63 16 3 C -0.14 -3.24 8.84 71.98 0.64 -2.60 16 4 C -0.13 -4.68 2.25 -11.54 -0.03 -4.70 16 5 H 0.10 3.08 8.08 -2.39 -0.02 3.06 16 6 C -0.12 -4.43 8.82 71.98 0.64 -3.79 16 7 C 0.38 17.20 3.02 29.10 0.09 17.29 16 8 O -0.47 -24.63 12.26 -1.43 -0.02 -24.65 16 9 C 0.02 0.79 2.73 -13.03 -0.04 0.75 16 10 H 0.06 2.69 8.10 -2.38 -0.02 2.67 16 11 C -0.53 -26.29 6.69 25.60 0.17 -26.11 16 12 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 13 C 0.04 1.98 4.25 84.66 0.36 2.34 16 14 N -0.86 -48.58 10.11 21.45 0.22 -48.36 16 15 Si 0.93 41.80 29.54 68.60 2.03 43.82 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 C -0.02 -1.18 4.25 -19.87 -0.08 -1.27 16 20 C -0.10 -4.66 8.35 22.27 0.19 -4.47 16 21 C -0.15 -5.88 10.05 22.27 0.22 -5.66 16 22 C -0.15 -5.45 10.05 22.27 0.22 -5.23 16 23 C -0.14 -5.48 10.05 22.27 0.22 -5.25 16 24 C -0.13 -5.92 8.36 22.27 0.19 -5.73 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.13 5.45 -2.38 -0.01 1.12 16 28 H 0.05 1.71 7.86 -2.39 -0.02 1.69 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.36 6.43 -2.38 -0.02 1.35 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 2.35 6.43 -2.39 -0.02 2.34 16 34 H 0.05 2.14 7.53 -2.39 -0.02 2.13 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.11 5.24 6.52 -2.91 -0.02 5.23 16 37 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.10 4.40 5.74 -2.91 -0.02 4.38 16 Total: -1.00 -61.49 315.15 6.64 -54.85 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.01 Total: 25.10 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 3.41 Total: -50.77 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.22 Total: -48.36 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.02 Total: -24.65 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -61.49 6.64 -54.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.639 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds