Wall clock time and date at job start Mon Mar 30 2020 06:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.52998 * 109.47801 * 120.00185 * 2 1 3 5 5 H 1.08996 * 109.47107 * 300.00577 * 4 2 1 6 6 C 1.52997 * 109.47274 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.46851 * 60.00379 * 4 2 1 8 8 O 1.20761 * 120.00170 * 29.99792 * 7 4 2 9 9 C 1.50699 * 119.99587 * 210.00410 * 7 4 2 10 10 H 1.08992 * 109.47424 * 329.99649 * 9 7 4 11 11 C 1.50700 * 109.47556 * 90.00145 * 9 7 4 12 12 H 1.08001 * 120.00315 * 35.03527 * 11 9 7 13 13 C 1.37877 * 120.00093 * 215.04564 * 11 9 7 14 14 N 1.31516 * 119.99895 * 5.07824 * 13 11 9 15 15 Si 1.86801 * 120.00118 * 185.07882 * 13 11 9 16 16 H 1.48503 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46833 * 119.99688 * 15 13 11 18 18 H 1.48499 * 109.46993 * 240.00090 * 15 13 11 19 19 C 1.50707 * 109.47023 * 209.99691 * 9 7 4 20 20 C 1.38237 * 119.99694 * 293.08294 * 19 9 7 21 21 C 1.38234 * 119.99610 * 180.02562 * 20 19 9 22 22 C 1.38239 * 120.00232 * 0.06695 * 21 20 19 23 23 C 1.38227 * 119.99714 * 359.97438 * 22 21 20 24 24 C 1.38226 * 119.99808 * 113.20629 * 19 9 7 25 25 H 1.08992 * 109.47405 * 60.00209 * 1 2 3 26 26 H 1.09002 * 109.46540 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46860 * 299.98972 * 1 2 3 28 28 H 1.09003 * 109.47470 * 240.00974 * 2 1 3 29 29 H 1.08996 * 109.46984 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47447 * 300.00461 * 3 2 1 31 31 H 1.08996 * 109.46691 * 60.00319 * 3 2 1 32 32 H 1.08996 * 109.47541 * 300.00332 * 6 4 2 33 33 H 1.09002 * 109.46787 * 60.00148 * 6 4 2 34 34 H 1.09000 * 109.47130 * 179.97438 * 6 4 2 35 35 H 0.97001 * 119.99902 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.00065 * 0.10199 * 20 19 9 37 37 H 1.08008 * 119.99958 * 180.33983 * 21 20 19 38 38 H 1.08000 * 119.99796 * 179.97438 * 22 21 20 39 39 H 1.08010 * 120.00096 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00481 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 3.5701 -0.7217 1.2487 7 6 1.5379 -2.1421 1.2490 8 8 1.3366 -2.7113 0.2032 9 6 1.2868 -2.8526 2.5541 10 1 1.9676 -2.4685 3.3137 11 6 -0.1364 -2.6160 2.9893 12 1 -0.9219 -2.5442 2.2515 13 6 -0.4359 -2.4910 4.3293 14 7 0.5309 -2.4781 5.2208 15 14 -2.2150 -2.3400 4.8786 16 1 -3.1051 -2.3818 3.6907 17 1 -2.5497 -3.4659 5.7872 18 1 -2.4043 -1.0528 5.5946 19 6 1.5178 -4.3309 2.3739 20 6 0.6738 -5.0686 1.5649 21 6 0.8853 -6.4247 1.4000 22 6 1.9399 -7.0433 2.0451 23 6 2.7833 -6.3057 2.8547 24 6 2.5719 -4.9495 3.0195 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9331 -1.2357 0.3587 33 1 3.9337 0.3058 1.2485 34 1 3.9335 -1.2352 2.1389 35 1 0.3202 -2.3898 6.1635 36 1 -0.1500 -4.5853 1.0608 37 1 0.2293 -7.0001 0.7636 38 1 2.1049 -8.1029 1.9166 39 1 3.6070 -6.7890 3.3591 40 1 3.2303 -4.3734 3.6527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:31 Heat of formation + Delta-G solvation = -42.919303 kcal Electronic energy + Delta-G solvation = -20013.994900 eV Core-core repulsion = 17178.623541 eV Total energy + Delta-G solvation = -2835.371359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39657 -37.89874 -35.52834 -33.61162 -31.18253 -30.39030 -29.96125 -27.65450 -26.77364 -24.37001 -23.37597 -21.61948 -21.14174 -19.55642 -18.22649 -16.62910 -15.88753 -15.59190 -14.79568 -14.52392 -14.11306 -14.02297 -13.82300 -13.43380 -13.02669 -12.58199 -12.48038 -12.25785 -12.00167 -11.84999 -11.72025 -11.62428 -11.41488 -11.15062 -11.06358 -10.86880 -10.60222 -10.39335 -10.26859 -10.26011 -10.03465 -9.83804 -9.41103 -8.75699 -8.33470 -7.97761 -7.57514 -6.25905 -4.29563 2.32403 2.36435 3.07694 3.20824 3.29311 3.34831 4.28735 4.70005 5.02229 5.11494 5.14765 5.31482 5.58576 5.68458 5.77027 5.80129 5.84488 5.86157 5.94189 5.99308 6.16244 6.21155 6.23504 6.27536 6.36532 6.39116 6.46060 6.53249 6.60728 6.71190 6.81384 6.83005 6.88529 7.00646 7.19447 7.33698 7.43622 7.65061 7.77540 7.94768 8.10802 8.63089 8.80649 9.34175 10.83117 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.009459 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.654846 B = 2959.425932 C = 4212.842616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.135 4.135 5 H 0.098 0.902 6 C -0.138 4.138 7 C 0.382 3.618 8 O -0.483 6.483 9 C 0.022 3.978 10 H 0.089 0.911 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.074 3.926 14 N -0.879 5.879 15 Si 0.896 3.104 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.028 4.028 20 C -0.084 4.084 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.266 0.734 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 2.112 -5.261 6.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.154 4.154 5 H 0.116 0.884 6 C -0.195 4.195 7 C 0.259 3.741 8 O -0.358 6.358 9 C 0.003 3.997 10 H 0.107 0.893 11 C -0.541 4.541 12 H 0.080 0.920 13 C -0.131 4.131 14 N -0.515 5.515 15 Si 0.723 3.277 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.028 4.028 20 C -0.102 4.102 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.829 1.836 -5.606 7.033 hybrid contribution -1.001 0.019 0.679 1.210 sum 2.828 1.855 -4.927 5.976 Atomic orbital electron populations 1.21848 0.95125 1.02656 1.00895 1.20959 0.96058 0.95233 0.97787 1.21895 1.00792 0.96293 1.01360 1.21747 0.96688 0.96905 1.00074 0.88382 1.21693 0.93820 1.01925 1.02059 1.25005 0.69742 0.88069 0.91250 1.90230 1.41334 1.68396 1.35874 1.18565 1.00393 0.87934 0.92776 0.89333 1.20621 0.90326 1.51007 0.92110 0.92010 1.24950 0.97674 0.93783 0.96647 1.69894 1.31642 1.48181 1.01793 0.86461 0.84473 0.77829 0.78966 1.19400 1.20681 1.20713 1.20364 0.91828 0.97872 0.92772 1.20953 0.98868 0.92803 0.97556 1.21014 0.98324 0.95283 1.00830 1.20818 0.97065 0.98680 1.00116 1.20917 0.99696 0.94551 0.99992 1.21048 0.98348 0.94428 1.00300 0.93567 0.91890 0.92566 0.91072 0.92677 0.93207 0.92670 0.92886 0.91959 0.92060 0.92446 0.86578 0.87553 0.87704 0.87549 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.92 37.16 0.33 -2.13 16 2 C -0.08 -1.31 2.16 -90.62 -0.20 -1.50 16 3 C -0.15 -1.88 8.84 37.16 0.33 -1.56 16 4 C -0.13 -2.40 2.24 -91.77 -0.21 -2.61 16 5 H 0.10 1.82 8.12 -51.93 -0.42 1.40 16 6 C -0.14 -2.10 8.82 37.16 0.33 -1.77 16 7 C 0.38 8.16 4.33 -29.03 -0.13 8.03 16 8 O -0.48 -11.04 14.15 6.00 0.08 -10.96 16 9 C 0.02 0.53 2.38 -94.07 -0.22 0.31 16 10 H 0.09 2.21 6.97 -51.93 -0.36 1.84 16 11 C -0.50 -12.89 7.62 -34.44 -0.26 -13.16 16 12 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 13 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 14 N -0.88 -23.50 12.77 55.43 0.71 -22.79 16 15 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.03 -0.64 4.61 -104.62 -0.48 -1.13 16 20 C -0.08 -1.88 8.06 -39.58 -0.32 -2.20 16 21 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 22 C -0.15 -2.73 10.05 -39.59 -0.40 -3.13 16 23 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 24 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.21 6.65 -51.93 -0.35 0.86 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 29 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.12 2.68 7.57 -52.49 -0.40 2.28 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.11 2.31 7.96 -52.49 -0.42 1.89 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -27.59 328.16 -8.15 -35.75 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.37 Total: 5.70 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.50 Total: -28.04 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.71 Total: -22.79 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.59 -8.15 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.172 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds