Wall clock time and date at job start Mon Mar 30 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.52998 * 109.47801 * 120.00185 * 2 1 3 5 5 H 1.08996 * 109.47107 * 300.00577 * 4 2 1 6 6 C 1.52997 * 109.47274 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.46851 * 60.00379 * 4 2 1 8 8 O 1.20761 * 120.00170 * 29.99792 * 7 4 2 9 9 C 1.50699 * 119.99587 * 210.00410 * 7 4 2 10 10 H 1.08992 * 109.47424 * 329.99649 * 9 7 4 11 11 C 1.50700 * 109.47556 * 90.00145 * 9 7 4 12 12 H 1.08001 * 120.00315 * 35.03527 * 11 9 7 13 13 C 1.37877 * 120.00093 * 215.04564 * 11 9 7 14 14 N 1.31516 * 119.99895 * 5.07824 * 13 11 9 15 15 Si 1.86801 * 120.00118 * 185.07882 * 13 11 9 16 16 H 1.48503 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46833 * 119.99688 * 15 13 11 18 18 H 1.48499 * 109.46993 * 240.00090 * 15 13 11 19 19 C 1.50707 * 109.47023 * 209.99691 * 9 7 4 20 20 C 1.38237 * 119.99694 * 293.08294 * 19 9 7 21 21 C 1.38234 * 119.99610 * 180.02562 * 20 19 9 22 22 C 1.38239 * 120.00232 * 0.06695 * 21 20 19 23 23 C 1.38227 * 119.99714 * 359.97438 * 22 21 20 24 24 C 1.38226 * 119.99808 * 113.20629 * 19 9 7 25 25 H 1.08992 * 109.47405 * 60.00209 * 1 2 3 26 26 H 1.09002 * 109.46540 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46860 * 299.98972 * 1 2 3 28 28 H 1.09003 * 109.47470 * 240.00974 * 2 1 3 29 29 H 1.08996 * 109.46984 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47447 * 300.00461 * 3 2 1 31 31 H 1.08996 * 109.46691 * 60.00319 * 3 2 1 32 32 H 1.08996 * 109.47541 * 300.00332 * 6 4 2 33 33 H 1.09002 * 109.46787 * 60.00148 * 6 4 2 34 34 H 1.09000 * 109.47130 * 179.97438 * 6 4 2 35 35 H 0.97001 * 119.99902 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.00065 * 0.10199 * 20 19 9 37 37 H 1.08008 * 119.99958 * 180.33983 * 21 20 19 38 38 H 1.08000 * 119.99796 * 179.97438 * 22 21 20 39 39 H 1.08010 * 120.00096 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00481 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 3.5701 -0.7217 1.2487 7 6 1.5379 -2.1421 1.2490 8 8 1.3366 -2.7113 0.2032 9 6 1.2868 -2.8526 2.5541 10 1 1.9676 -2.4685 3.3137 11 6 -0.1364 -2.6160 2.9893 12 1 -0.9219 -2.5442 2.2515 13 6 -0.4359 -2.4910 4.3293 14 7 0.5309 -2.4781 5.2208 15 14 -2.2150 -2.3400 4.8786 16 1 -3.1051 -2.3818 3.6907 17 1 -2.5497 -3.4659 5.7872 18 1 -2.4043 -1.0528 5.5946 19 6 1.5178 -4.3309 2.3739 20 6 0.6738 -5.0686 1.5649 21 6 0.8853 -6.4247 1.4000 22 6 1.9399 -7.0433 2.0451 23 6 2.7833 -6.3057 2.8547 24 6 2.5719 -4.9495 3.0195 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9331 -1.2357 0.3587 33 1 3.9337 0.3058 1.2485 34 1 3.9335 -1.2352 2.1389 35 1 0.3202 -2.3898 6.1635 36 1 -0.1500 -4.5853 1.0608 37 1 0.2293 -7.0001 0.7636 38 1 2.1049 -8.1029 1.9166 39 1 3.6070 -6.7890 3.3591 40 1 3.2303 -4.3734 3.6527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:30 Heat of formation + Delta-G solvation = -54.983919 kcal Electronic energy + Delta-G solvation = -20014.518061 eV Core-core repulsion = 17178.623541 eV Total energy + Delta-G solvation = -2835.894520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05361 -39.47279 -36.96238 -35.50418 -32.97283 -31.75634 -31.54992 -29.32231 -28.04615 -26.13144 -24.90767 -23.23009 -22.64526 -21.06443 -19.83031 -18.57170 -17.50555 -17.20112 -16.51901 -16.14330 -15.65128 -15.57098 -15.28865 -14.98304 -14.57060 -14.15808 -14.04611 -13.73182 -13.58154 -13.23475 -13.18114 -13.05081 -12.90967 -12.86159 -12.77378 -12.34609 -12.11970 -11.99938 -11.86608 -11.59626 -11.53817 -11.37288 -11.26949 -10.72718 -10.04848 -9.59021 -9.22933 -8.24677 -6.33487 0.70844 0.76304 1.32132 1.36906 1.44186 1.52360 2.37677 3.03142 3.17481 3.50362 3.81580 4.04709 4.20894 4.27017 4.27777 4.40778 4.50700 4.53532 4.63984 4.66889 4.81122 4.83655 4.86541 4.95868 4.98229 5.01080 5.04966 5.11882 5.13481 5.23961 5.30254 5.38288 5.44006 5.52309 5.55424 5.61839 5.75455 5.81409 5.95947 6.23638 6.38588 6.71907 6.99002 7.31718 8.84039 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.009459 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.654846 B = 2959.425932 C = 4212.842616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.132 4.132 5 H 0.086 0.914 6 C -0.133 4.133 7 C 0.381 3.619 8 O -0.502 6.502 9 C 0.021 3.979 10 H 0.068 0.932 11 C -0.510 4.510 12 H 0.045 0.955 13 C 0.034 3.966 14 N -0.904 5.904 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.271 1.271 19 C -0.057 4.057 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 1.829 -5.703 7.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.196 4.196 4 C -0.152 4.152 5 H 0.105 0.895 6 C -0.190 4.190 7 C 0.260 3.740 8 O -0.379 6.379 9 C 0.002 3.998 10 H 0.086 0.914 11 C -0.548 4.548 12 H 0.063 0.937 13 C -0.168 4.168 14 N -0.541 5.541 15 Si 0.773 3.227 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.196 1.196 19 C -0.057 4.057 20 C -0.129 4.129 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.553 1.561 -6.049 7.730 hybrid contribution -1.204 0.017 0.777 1.433 sum 3.349 1.578 -5.272 6.442 Atomic orbital electron populations 1.21833 0.95967 1.00642 1.01933 1.20961 0.95365 0.97222 0.96195 1.21845 1.01764 0.93660 1.02371 1.21740 0.98521 0.94185 1.00706 0.89531 1.21697 0.91561 1.03923 1.01782 1.25172 0.69133 0.89608 0.90042 1.90204 1.42287 1.69328 1.36071 1.18493 0.98797 0.89139 0.93414 0.91380 1.20689 0.91114 1.50925 0.92036 0.93676 1.25560 1.00863 0.93720 0.96647 1.69978 1.33008 1.49204 1.01946 0.85648 0.80567 0.78081 0.78358 1.19566 1.20643 1.19592 1.20417 0.93353 0.97603 0.94339 1.20924 0.98873 0.94443 0.98622 1.21359 0.99119 0.94162 1.00852 1.21295 0.95587 1.00654 0.98395 1.21332 1.00451 0.93425 0.99441 1.21201 0.98295 0.96008 1.00670 0.91143 0.95377 0.92871 0.91764 0.91093 0.91436 0.92445 0.92719 0.88782 0.92804 0.92323 0.88743 0.84791 0.83454 0.84021 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.92 71.98 0.64 -4.27 16 2 C -0.08 -2.47 2.16 -10.79 -0.02 -2.50 16 3 C -0.14 -3.25 8.84 71.98 0.64 -2.61 16 4 C -0.13 -4.77 2.24 -11.54 -0.03 -4.80 16 5 H 0.09 3.31 8.12 -2.39 -0.02 3.29 16 6 C -0.13 -3.94 8.82 71.98 0.63 -3.30 16 7 C 0.38 17.02 4.33 29.10 0.13 17.15 16 8 O -0.50 -23.99 14.15 -1.45 -0.02 -24.01 16 9 C 0.02 1.04 2.38 -13.03 -0.03 1.00 16 10 H 0.07 3.59 6.97 -2.39 -0.02 3.57 16 11 C -0.51 -27.36 7.62 25.60 0.20 -27.17 16 12 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 13 C 0.03 1.80 5.45 84.65 0.46 2.26 16 14 N -0.90 -49.60 12.77 21.45 0.27 -49.32 16 15 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.06 -2.71 4.61 -19.87 -0.09 -2.81 16 20 C -0.11 -5.09 8.06 22.27 0.18 -4.91 16 21 C -0.14 -5.21 10.05 22.27 0.22 -4.98 16 22 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16 23 C -0.13 -4.61 10.05 22.27 0.22 -4.38 16 24 C -0.14 -6.20 9.67 22.27 0.22 -5.99 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.11 6.65 -2.39 -0.02 1.09 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 29 H 0.07 1.44 6.43 -2.39 -0.02 1.42 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 2.19 6.43 -2.39 -0.02 2.17 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.09 4.63 7.57 -2.91 -0.02 4.61 16 37 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.11 4.67 7.96 -2.91 -0.02 4.64 16 Total: -1.00 -61.58 328.16 6.86 -54.71 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.99 Total: 25.78 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 3.59 Total: -51.85 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.27 Total: -49.32 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.02 Total: -24.01 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -61.58 6.86 -54.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.271 kcal (2) G-P(sol) polarization free energy of solvation -61.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds