Wall clock time and date at job start Mon Mar 30 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46931 * 2 1 4 4 C 1.53000 * 109.47244 * 120.00068 * 2 1 3 5 5 H 1.09004 * 109.47100 * 300.00068 * 4 2 1 6 6 C 1.52996 * 109.46940 * 60.00023 * 4 2 1 7 7 C 1.50702 * 109.47096 * 180.02562 * 4 2 1 8 8 O 1.20755 * 119.99991 * 334.99835 * 7 4 2 9 9 C 1.50698 * 119.99935 * 154.99841 * 7 4 2 10 10 H 1.09003 * 109.47184 * 325.74999 * 9 7 4 11 11 C 1.50706 * 109.46813 * 85.74723 * 9 7 4 12 12 H 1.07992 * 120.00113 * 28.92115 * 11 9 7 13 13 C 1.37880 * 119.99816 * 208.91962 * 11 9 7 14 14 N 1.31518 * 120.00021 * 0.79199 * 13 11 9 15 15 Si 1.86800 * 119.99830 * 180.78798 * 13 11 9 16 16 H 1.48497 * 109.47102 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47162 * 300.00134 * 15 13 11 18 18 H 1.48499 * 109.47065 * 60.00119 * 15 13 11 19 19 C 1.50697 * 109.47352 * 205.74640 * 9 7 4 20 20 C 1.38236 * 119.99847 * 293.41747 * 19 9 7 21 21 C 1.38243 * 119.99542 * 179.80644 * 20 19 9 22 22 C 1.38230 * 120.00129 * 0.39976 * 21 20 19 23 23 C 1.38236 * 120.00093 * 359.85733 * 22 21 20 24 24 C 1.38234 * 120.00108 * 359.94983 * 23 22 21 25 25 H 1.09004 * 109.47128 * 299.99881 * 1 2 3 26 26 H 1.08997 * 109.47369 * 59.99620 * 1 2 3 27 27 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47427 * 240.00422 * 2 1 3 29 29 H 1.08996 * 109.46936 * 60.00436 * 3 2 1 30 30 H 1.09003 * 109.46761 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47158 * 299.99917 * 3 2 1 32 32 H 1.09004 * 109.47188 * 60.00098 * 6 4 2 33 33 H 1.09010 * 109.46943 * 179.97438 * 6 4 2 34 34 H 1.08997 * 109.47385 * 300.00274 * 6 4 2 35 35 H 0.96998 * 119.99590 * 354.67496 * 14 13 11 36 36 H 1.07998 * 120.00015 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99667 * 180.23245 * 21 20 19 38 38 H 1.07998 * 120.00016 * 179.83023 * 22 21 20 39 39 H 1.07994 * 120.00069 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00173 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 3.5470 -0.7207 1.2495 8 8 4.1510 -0.6292 0.2078 9 6 4.3003 -0.8343 2.5498 10 1 3.7460 -0.3229 3.3367 11 6 4.4607 -2.2884 2.9119 12 1 4.5056 -3.0367 2.1346 13 6 4.5501 -2.6633 4.2357 14 7 4.4798 -1.7537 5.1830 15 14 4.7709 -4.4633 4.6838 16 1 4.8381 -4.6010 6.1609 17 1 3.6209 -5.2470 4.1658 18 1 6.0288 -4.9727 4.0810 19 6 5.6596 -0.2011 2.3999 20 6 6.5962 -0.7667 1.5550 21 6 7.8417 -0.1836 1.4145 22 6 8.1533 0.9604 2.1252 23 6 7.2186 1.5230 2.9741 24 6 5.9717 0.9421 3.1116 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.8934 -2.6775 0.3591 33 1 1.8938 -2.6777 2.1390 34 1 0.4400 -2.1638 1.2491 35 1 4.4428 -0.8128 4.9500 36 1 6.3539 -1.6626 1.0027 37 1 8.5721 -0.6233 0.7516 38 1 9.1273 1.4144 2.0175 39 1 7.4622 2.4164 3.5296 40 1 5.2416 1.3814 3.7751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:34 Heat of formation + Delta-G solvation = -44.269864 kcal Electronic energy + Delta-G solvation = -20079.216305 eV Core-core repulsion = 17243.786382 eV Total energy + Delta-G solvation = -2835.429924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55556 -38.01222 -35.63158 -33.98922 -30.97923 -30.44214 -30.06978 -27.49413 -26.83957 -24.36763 -23.22992 -21.68642 -21.26567 -19.78158 -18.46386 -17.09946 -15.95531 -15.53718 -14.93279 -14.44717 -14.12353 -13.86908 -13.79118 -13.67771 -13.12263 -12.74199 -12.53517 -12.46294 -12.09047 -11.92569 -11.81577 -11.67822 -11.58923 -11.09391 -10.93036 -10.78478 -10.69355 -10.37869 -10.33921 -10.22215 -10.10690 -10.06960 -8.99394 -8.68089 -8.41276 -8.06879 -7.66018 -6.55297 -4.29979 2.22010 2.27817 2.97454 3.34804 3.38846 3.55196 4.38888 4.59872 4.91057 5.05325 5.18244 5.21167 5.50730 5.61036 5.66825 5.74610 5.79180 5.83555 5.86263 5.89077 6.04379 6.08230 6.09314 6.22354 6.26004 6.35377 6.38878 6.44271 6.53081 6.59235 6.61151 6.70278 6.84633 6.89551 6.95401 7.24169 7.32300 7.58662 7.81207 7.94820 8.19102 8.51920 8.64941 9.40486 10.82949 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.009734 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.807829 B = 2875.766266 C = 4374.591931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.150 4.150 4 C -0.129 4.129 5 H 0.086 0.914 6 C -0.137 4.137 7 C 0.385 3.615 8 O -0.478 6.478 9 C 0.016 3.984 10 H 0.064 0.936 11 C -0.580 4.580 12 H 0.056 0.944 13 C 0.032 3.968 14 N -0.895 5.895 15 Si 1.066 2.934 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.035 4.035 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.273 0.727 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 3.674 -5.858 7.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.208 4.208 4 C -0.148 4.148 5 H 0.104 0.896 6 C -0.194 4.194 7 C 0.263 3.737 8 O -0.353 6.353 9 C -0.003 4.003 10 H 0.082 0.918 11 C -0.617 4.617 12 H 0.074 0.926 13 C -0.175 4.175 14 N -0.530 5.530 15 Si 0.893 3.107 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.035 4.035 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.148 4.148 24 C -0.149 4.149 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.984 2.688 -5.108 6.498 hybrid contribution 0.005 1.082 -1.091 1.537 sum -2.979 3.770 -6.199 7.843 Atomic orbital electron populations 1.21884 0.95475 1.01708 1.01241 1.21009 0.95052 0.96093 0.98222 1.21887 1.02037 0.95896 1.00938 1.21691 0.95686 0.98442 0.98977 0.89588 1.21709 0.99987 0.94224 1.03480 1.24788 0.90405 0.67624 0.90925 1.90240 1.71741 1.37635 1.35697 1.18597 0.89652 0.98900 0.93188 0.91843 1.21434 1.56467 0.88862 0.94946 0.92568 1.25848 0.92845 1.06499 0.92308 1.70793 1.44196 1.02738 1.35228 0.83575 0.76864 0.73756 0.76481 1.20570 1.21104 1.21184 1.20393 0.97865 0.91959 0.93319 1.20896 0.92250 0.98960 0.97423 1.21033 0.97020 0.96754 1.00446 1.20839 0.98826 0.97495 0.99248 1.20899 0.94321 0.99980 0.99643 1.21020 0.96790 0.96474 1.00577 0.92838 0.93127 0.92368 0.90775 0.93102 0.92037 0.93126 0.93119 0.90076 0.92580 0.91574 0.86580 0.87378 0.87512 0.87400 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.84 37.16 0.33 -1.49 16 2 C -0.09 -1.31 2.14 -90.62 -0.19 -1.51 16 3 C -0.15 -2.27 8.91 37.16 0.33 -1.94 16 4 C -0.13 -2.27 2.24 -91.77 -0.21 -2.48 16 5 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 6 C -0.14 -2.30 8.77 37.16 0.33 -1.98 16 7 C 0.39 8.19 4.55 -29.03 -0.13 8.06 16 8 O -0.48 -10.89 13.77 6.00 0.08 -10.81 16 9 C 0.02 0.37 1.97 -94.07 -0.19 0.19 16 10 H 0.06 1.54 6.35 -51.93 -0.33 1.21 16 11 C -0.58 -14.77 6.77 -34.44 -0.23 -15.00 16 12 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 13 C 0.03 0.83 5.46 -17.82 -0.10 0.73 16 14 N -0.90 -24.87 13.60 55.43 0.75 -24.12 16 15 Si 1.07 23.73 29.90 -169.99 -5.08 18.65 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.03 -0.80 4.57 -104.62 -0.48 -1.28 16 20 C -0.08 -1.74 8.03 -39.58 -0.32 -2.06 16 21 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 22 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 23 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 24 C -0.13 -2.78 9.67 -39.58 -0.38 -3.16 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 28 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.08 6.46 -51.93 -0.34 0.74 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.53 7.30 -51.92 -0.38 1.16 16 34 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 35 H 0.27 7.48 6.66 -40.82 -0.27 7.21 16 36 H 0.12 2.71 7.64 -52.49 -0.40 2.31 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.11 2.19 7.96 -52.49 -0.42 1.78 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -28.25 324.59 -8.01 -36.26 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.22 Total: 6.03 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -2.43 Total: -30.91 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.75 Total: -24.12 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.08 Total: 18.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.25 -8.01 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.009 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds