Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46931 * 2 1 4 4 C 1.53000 * 109.47244 * 120.00068 * 2 1 3 5 5 H 1.09004 * 109.47100 * 300.00068 * 4 2 1 6 6 C 1.52996 * 109.46940 * 60.00023 * 4 2 1 7 7 C 1.50702 * 109.47096 * 180.02562 * 4 2 1 8 8 O 1.20755 * 119.99991 * 334.99835 * 7 4 2 9 9 C 1.50698 * 119.99935 * 154.99841 * 7 4 2 10 10 H 1.09003 * 109.47184 * 325.74999 * 9 7 4 11 11 C 1.50706 * 109.46813 * 85.74723 * 9 7 4 12 12 H 1.07992 * 120.00113 * 28.92115 * 11 9 7 13 13 C 1.37880 * 119.99816 * 208.91962 * 11 9 7 14 14 N 1.31518 * 120.00021 * 0.79199 * 13 11 9 15 15 Si 1.86800 * 119.99830 * 180.78798 * 13 11 9 16 16 H 1.48497 * 109.47102 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47162 * 300.00134 * 15 13 11 18 18 H 1.48499 * 109.47065 * 60.00119 * 15 13 11 19 19 C 1.50697 * 109.47352 * 205.74640 * 9 7 4 20 20 C 1.38236 * 119.99847 * 293.41747 * 19 9 7 21 21 C 1.38243 * 119.99542 * 179.80644 * 20 19 9 22 22 C 1.38230 * 120.00129 * 0.39976 * 21 20 19 23 23 C 1.38236 * 120.00093 * 359.85733 * 22 21 20 24 24 C 1.38234 * 120.00108 * 359.94983 * 23 22 21 25 25 H 1.09004 * 109.47128 * 299.99881 * 1 2 3 26 26 H 1.08997 * 109.47369 * 59.99620 * 1 2 3 27 27 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47427 * 240.00422 * 2 1 3 29 29 H 1.08996 * 109.46936 * 60.00436 * 3 2 1 30 30 H 1.09003 * 109.46761 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47158 * 299.99917 * 3 2 1 32 32 H 1.09004 * 109.47188 * 60.00098 * 6 4 2 33 33 H 1.09010 * 109.46943 * 179.97438 * 6 4 2 34 34 H 1.08997 * 109.47385 * 300.00274 * 6 4 2 35 35 H 0.96998 * 119.99590 * 354.67496 * 14 13 11 36 36 H 1.07998 * 120.00015 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99667 * 180.23245 * 21 20 19 38 38 H 1.07998 * 120.00016 * 179.83023 * 22 21 20 39 39 H 1.07994 * 120.00069 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00173 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 3.5470 -0.7207 1.2495 8 8 4.1510 -0.6292 0.2078 9 6 4.3003 -0.8343 2.5498 10 1 3.7460 -0.3229 3.3367 11 6 4.4607 -2.2884 2.9119 12 1 4.5056 -3.0367 2.1346 13 6 4.5501 -2.6633 4.2357 14 7 4.4798 -1.7537 5.1830 15 14 4.7709 -4.4633 4.6838 16 1 4.8381 -4.6010 6.1609 17 1 3.6209 -5.2470 4.1658 18 1 6.0288 -4.9727 4.0810 19 6 5.6596 -0.2011 2.3999 20 6 6.5962 -0.7667 1.5550 21 6 7.8417 -0.1836 1.4145 22 6 8.1533 0.9604 2.1252 23 6 7.2186 1.5230 2.9741 24 6 5.9717 0.9421 3.1116 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.8934 -2.6775 0.3591 33 1 1.8938 -2.6777 2.1390 34 1 0.4400 -2.1638 1.2491 35 1 4.4428 -0.8128 4.9500 36 1 6.3539 -1.6626 1.0027 37 1 8.5721 -0.6233 0.7516 38 1 9.1273 1.4144 2.0175 39 1 7.4622 2.4164 3.5296 40 1 5.2416 1.3814 3.7751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = -56.986864 kcal Electronic energy + Delta-G solvation = -20079.767756 eV Core-core repulsion = 17243.786382 eV Total energy + Delta-G solvation = -2835.981374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21312 -39.58569 -37.03942 -35.88229 -32.76672 -31.81971 -31.66901 -29.08462 -28.10390 -26.12430 -24.84411 -23.30416 -22.75862 -21.30673 -20.03959 -18.97736 -17.53429 -17.14675 -16.49377 -16.08949 -15.67741 -15.46749 -15.38498 -15.15593 -14.73858 -14.33229 -14.11289 -13.98868 -13.49615 -13.35986 -13.30600 -13.08996 -12.91511 -12.71362 -12.59076 -12.33280 -12.00392 -11.97343 -11.94623 -11.75399 -11.60808 -11.42951 -10.89289 -10.63035 -10.15200 -9.68595 -9.32582 -8.63188 -6.37144 0.60579 0.67180 1.26111 1.53832 1.60030 1.78243 2.53834 2.98831 3.18568 3.38941 3.74890 3.98297 4.09292 4.18834 4.20152 4.32648 4.40369 4.42644 4.55838 4.60304 4.67599 4.71534 4.78367 4.82721 4.88712 4.91179 4.95911 5.01057 5.11187 5.17967 5.26148 5.29438 5.31115 5.45702 5.51594 5.65980 5.70167 5.75318 6.04847 6.12583 6.27871 6.55560 6.83809 7.38695 8.75516 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.009734 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.807829 B = 2875.766266 C = 4374.591931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.127 4.127 5 H 0.089 0.911 6 C -0.131 4.131 7 C 0.384 3.616 8 O -0.496 6.496 9 C 0.012 3.988 10 H 0.047 0.953 11 C -0.576 4.576 12 H 0.042 0.958 13 C -0.010 4.010 14 N -0.922 5.922 15 Si 1.103 2.897 16 H -0.283 1.283 17 H -0.264 1.264 18 H -0.280 1.280 19 C -0.062 4.062 20 C -0.106 4.106 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 4.338 -6.452 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.146 4.146 5 H 0.107 0.893 6 C -0.188 4.188 7 C 0.263 3.737 8 O -0.373 6.373 9 C -0.008 4.008 10 H 0.065 0.935 11 C -0.614 4.614 12 H 0.060 0.940 13 C -0.211 4.211 14 N -0.557 5.557 15 Si 0.925 3.075 16 H -0.208 1.208 17 H -0.189 1.189 18 H -0.206 1.206 19 C -0.062 4.062 20 C -0.124 4.124 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.169 4.169 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.064 3.357 -5.718 7.304 hybrid contribution 0.103 0.958 -0.963 1.363 sum -2.961 4.315 -6.682 8.487 Atomic orbital electron populations 1.21843 0.92538 1.02711 1.02595 1.20991 0.97373 0.95570 0.96040 1.21866 0.99954 0.96216 1.02494 1.21715 0.92750 0.99530 1.00590 0.89301 1.21667 1.02083 0.93100 1.01948 1.24990 0.92249 0.66769 0.89703 1.90217 1.72641 1.38531 1.35911 1.18577 0.90575 0.97710 0.93895 0.93485 1.21512 1.55536 0.89803 0.94526 0.93971 1.26973 0.92351 1.09230 0.92554 1.70882 1.46653 1.02564 1.35636 0.83103 0.77750 0.70492 0.76123 1.20809 1.18919 1.20580 1.20424 0.97663 0.93382 0.94778 1.20880 0.93985 0.99159 0.98405 1.21384 0.96218 0.97079 1.00656 1.21324 1.00331 0.96466 0.97581 1.21334 0.93136 1.00654 0.99337 1.21207 0.98357 0.96547 1.00799 0.92027 0.91261 0.91557 0.92124 0.92206 0.95219 0.90903 0.93490 0.92681 0.89108 0.92551 0.88793 0.84599 0.83240 0.83885 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.84 71.98 0.64 -2.46 16 2 C -0.08 -2.42 2.14 -10.79 -0.02 -2.44 16 3 C -0.15 -4.37 8.91 71.98 0.64 -3.72 16 4 C -0.13 -4.50 2.24 -11.54 -0.03 -4.53 16 5 H 0.09 3.09 8.13 -2.39 -0.02 3.07 16 6 C -0.13 -4.37 8.77 71.98 0.63 -3.73 16 7 C 0.38 16.98 4.55 29.10 0.13 17.11 16 8 O -0.50 -23.55 13.77 -1.43 -0.02 -23.57 16 9 C 0.01 0.58 1.97 -13.03 -0.03 0.56 16 10 H 0.05 2.42 6.35 -2.39 -0.02 2.40 16 11 C -0.58 -30.52 6.77 25.60 0.17 -30.35 16 12 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 13 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 14 N -0.92 -52.65 13.60 21.45 0.29 -52.36 16 15 Si 1.10 48.36 29.90 68.60 2.05 50.41 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.06 -2.96 4.57 -19.87 -0.09 -3.05 16 20 C -0.11 -4.91 8.03 22.27 0.18 -4.73 16 21 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 22 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 23 C -0.13 -4.56 10.05 22.27 0.22 -4.33 16 24 C -0.15 -6.50 9.67 22.27 0.22 -6.28 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.36 6.43 -2.39 -0.02 1.35 16 28 H 0.06 1.97 7.87 -2.39 -0.02 1.96 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.04 6.46 -2.39 -0.02 1.03 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 2.12 7.30 -2.38 -0.02 2.10 16 34 H 0.09 2.37 6.43 -2.39 -0.02 2.36 16 35 H 0.26 15.08 6.66 -92.71 -0.62 14.47 16 36 H 0.09 4.63 7.64 -2.91 -0.02 4.61 16 37 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.11 4.56 7.96 -2.91 -0.02 4.54 16 Total: -1.00 -63.17 324.59 7.05 -56.12 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.15 Total: 26.90 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 3.58 Total: -57.49 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.29 Total: -52.36 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.02 Total: -23.57 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.05 Total: 50.41 kcal Total: -63.17 7.05 -56.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.868 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds