Wall clock time and date at job start Mon Mar 30 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46916 * 2 1 4 4 C 1.52997 * 109.46943 * 119.99626 * 2 1 3 5 5 H 1.08998 * 109.47608 * 300.00637 * 4 2 1 6 6 C 1.53004 * 109.47009 * 60.00430 * 4 2 1 7 7 C 1.50708 * 109.46909 * 180.02562 * 4 2 1 8 8 O 1.20752 * 119.99998 * 335.00128 * 7 4 2 9 9 C 1.50697 * 119.99808 * 155.00105 * 7 4 2 10 10 H 1.09006 * 109.47302 * 35.00369 * 9 7 4 11 11 C 1.50704 * 109.47405 * 275.00516 * 9 7 4 12 12 H 1.07992 * 120.00112 * 119.54216 * 11 9 7 13 13 C 1.37880 * 119.99330 * 299.53958 * 11 9 7 14 14 N 1.31513 * 120.00103 * 1.27855 * 13 11 9 15 15 Si 1.86798 * 119.99693 * 181.27409 * 13 11 9 16 16 H 1.48501 * 109.47356 * 90.00252 * 15 13 11 17 17 H 1.48502 * 109.47272 * 210.00294 * 15 13 11 18 18 H 1.48501 * 109.47301 * 329.99994 * 15 13 11 19 19 C 1.50698 * 109.47382 * 155.00101 * 9 7 4 20 20 C 1.38235 * 120.00319 * 142.58081 * 19 9 7 21 21 C 1.38232 * 120.00014 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00248 * 359.97438 * 21 20 19 23 23 C 1.38241 * 119.99623 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99958 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47458 * 60.00554 * 1 2 3 26 26 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47489 * 299.99663 * 1 2 3 28 28 H 1.08995 * 109.47385 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.46788 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46604 * 299.99969 * 3 2 1 31 31 H 1.08995 * 109.47243 * 59.99730 * 3 2 1 32 32 H 1.09010 * 109.46881 * 179.97438 * 6 4 2 33 33 H 1.08995 * 109.47364 * 299.99514 * 6 4 2 34 34 H 1.08995 * 109.47243 * 59.99856 * 6 4 2 35 35 H 0.97003 * 119.99925 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99935 * 0.25939 * 20 19 9 37 37 H 1.08005 * 119.99800 * 179.97438 * 21 20 19 38 38 H 1.07993 * 119.99797 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.99429 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99541 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 3.5470 -0.7206 1.2496 8 8 4.1510 -0.6291 0.2079 9 6 4.3002 -0.8342 2.5499 10 1 3.7530 -1.4859 3.2311 11 6 4.4435 0.5325 3.1686 12 1 4.0217 0.7311 4.1427 13 6 5.1130 1.5292 2.4908 14 7 5.6047 1.2946 1.2939 15 14 5.3215 3.2128 3.2728 16 1 6.5821 3.2417 4.0571 17 1 5.3757 4.2488 2.2103 18 1 4.1723 3.4864 4.1727 19 6 5.6669 -1.4136 2.2898 20 6 6.7589 -0.9559 3.0032 21 6 8.0123 -1.4878 2.7650 22 6 8.1738 -2.4778 1.8138 23 6 7.0815 -2.9363 1.1012 24 6 5.8279 -2.4051 1.3402 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.8937 -2.6776 2.1392 33 1 0.4400 -2.1638 1.2493 34 1 1.8933 -2.6775 0.3594 35 1 6.0754 1.9960 0.8169 36 1 6.6320 -0.1859 3.7499 37 1 8.8656 -1.1299 3.3221 38 1 9.1531 -2.8930 1.6275 39 1 7.2077 -3.7095 0.3578 40 1 4.9747 -2.7631 0.7831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:37 Heat of formation + Delta-G solvation = -30.738241 kcal Electronic energy + Delta-G solvation = -20507.315718 eV Core-core repulsion = 17672.472570 eV Total energy + Delta-G solvation = -2834.843149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.16179 -37.62804 -35.21597 -33.49115 -31.00079 -30.15064 -29.71522 -27.46615 -26.63445 -24.17378 -23.31235 -21.36506 -20.82962 -19.43139 -18.06185 -16.43024 -15.64758 -15.30596 -14.66813 -14.43510 -13.88707 -13.76818 -13.50657 -13.41362 -12.75846 -12.49948 -12.29320 -12.19753 -11.78570 -11.74219 -11.59713 -11.42412 -11.23761 -10.96733 -10.86574 -10.72419 -10.41545 -10.28116 -10.07360 -10.03544 -9.86497 -9.60304 -9.28377 -8.66366 -7.91929 -7.71821 -7.34527 -6.03732 -4.21594 2.54083 2.59527 3.22804 3.32533 3.32870 3.67955 4.34332 4.91868 5.12239 5.28431 5.32410 5.47404 5.76085 5.84032 5.87400 5.92696 5.95397 6.01340 6.08720 6.15095 6.28712 6.35142 6.36296 6.43166 6.51448 6.58918 6.63261 6.65484 6.79506 6.85739 6.99557 7.09962 7.16907 7.19675 7.29962 7.52566 7.63319 7.75027 7.85461 8.16195 8.29771 8.76607 9.26279 9.43551 10.92934 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.010130 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.986967 B = 2763.358167 C = 3991.423025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.137 4.137 5 H 0.088 0.912 6 C -0.137 4.137 7 C 0.376 3.624 8 O -0.435 6.435 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.533 4.533 12 H 0.065 0.935 13 C 0.074 3.926 14 N -0.830 5.830 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.003 4.003 20 C -0.074 4.074 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.115 4.115 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -4.686 0.408 6.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.208 4.208 4 C -0.156 4.156 5 H 0.106 0.894 6 C -0.195 4.195 7 C 0.249 3.751 8 O -0.306 6.306 9 C 0.013 3.987 10 H 0.070 0.930 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.134 4.134 14 N -0.462 5.462 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.004 4.004 20 C -0.092 4.092 21 C -0.159 4.159 22 C -0.168 4.168 23 C -0.155 4.155 24 C -0.134 4.134 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.293 -4.548 -0.350 6.264 hybrid contribution 0.166 1.262 0.298 1.307 sum -4.127 -3.286 -0.053 5.276 Atomic orbital electron populations 1.21916 0.96323 1.01015 1.01080 1.20883 0.94055 0.96796 0.97857 1.21894 1.04157 0.94994 0.99782 1.21780 0.97820 0.96521 0.99480 0.89408 1.21701 1.00594 0.95439 1.01737 1.24430 0.88687 0.70879 0.91112 1.90268 1.70842 1.34576 1.34939 1.18341 0.89957 0.97046 0.93350 0.92959 1.20611 1.38414 0.94020 1.04022 0.91726 1.25054 0.95159 0.98391 0.94819 1.70156 1.32828 1.32714 1.10490 0.86775 0.78766 0.84504 0.79260 1.20435 1.21165 1.19744 1.19973 0.96771 0.91106 0.92516 1.21042 0.91175 0.97484 0.99517 1.20984 0.97259 0.98250 0.99431 1.20738 0.97443 0.99655 0.98929 1.20796 0.93481 1.00969 1.00238 1.20885 0.96380 0.97806 0.98292 0.93428 0.92923 0.92984 0.91346 0.89795 0.94356 0.93475 0.92473 0.92362 0.92989 0.92709 0.85842 0.88075 0.88219 0.88150 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 37.16 0.33 -1.72 16 2 C -0.08 -1.36 2.14 -90.62 -0.19 -1.55 16 3 C -0.15 -2.93 8.91 37.16 0.33 -2.60 16 4 C -0.14 -2.51 2.24 -91.77 -0.21 -2.71 16 5 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 6 C -0.14 -2.08 8.82 37.16 0.33 -1.75 16 7 C 0.38 8.37 3.21 -29.03 -0.09 8.28 16 8 O -0.44 -10.95 11.94 6.01 0.07 -10.88 16 9 C 0.03 0.75 2.74 -94.08 -0.26 0.49 16 10 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 11 C -0.53 -13.18 7.31 -34.44 -0.25 -13.43 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.89 4.25 -17.82 -0.08 1.81 16 14 N -0.83 -22.37 10.09 55.43 0.56 -21.81 16 15 Si 0.88 20.09 29.54 -169.99 -5.02 15.07 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.00 -0.07 4.23 -104.63 -0.44 -0.51 16 20 C -0.07 -1.71 8.30 -39.58 -0.33 -2.04 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.15 -2.94 10.05 -39.58 -0.40 -3.33 16 23 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 24 C -0.12 -2.56 8.36 -39.58 -0.33 -2.89 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 29 H 0.08 1.96 6.46 -51.93 -0.34 1.63 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.12 2.93 6.53 -52.49 -0.34 2.58 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.10 2.19 6.93 -52.49 -0.36 1.82 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -27.57 318.45 -8.29 -35.86 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.31 Total: 5.41 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.39 Total: -28.45 kcal Atomic # 7 Polarization: -22.37 SS G_CDS: 0.56 Total: -21.81 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.57 -8.29 -35.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.126 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds