Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46916 * 2 1 4 4 C 1.52997 * 109.46943 * 119.99626 * 2 1 3 5 5 H 1.08998 * 109.47608 * 300.00637 * 4 2 1 6 6 C 1.53004 * 109.47009 * 60.00430 * 4 2 1 7 7 C 1.50708 * 109.46909 * 180.02562 * 4 2 1 8 8 O 1.20752 * 119.99998 * 335.00128 * 7 4 2 9 9 C 1.50697 * 119.99808 * 155.00105 * 7 4 2 10 10 H 1.09006 * 109.47302 * 35.00369 * 9 7 4 11 11 C 1.50704 * 109.47405 * 275.00516 * 9 7 4 12 12 H 1.07992 * 120.00112 * 119.54216 * 11 9 7 13 13 C 1.37880 * 119.99330 * 299.53958 * 11 9 7 14 14 N 1.31513 * 120.00103 * 1.27855 * 13 11 9 15 15 Si 1.86798 * 119.99693 * 181.27409 * 13 11 9 16 16 H 1.48501 * 109.47356 * 90.00252 * 15 13 11 17 17 H 1.48502 * 109.47272 * 210.00294 * 15 13 11 18 18 H 1.48501 * 109.47301 * 329.99994 * 15 13 11 19 19 C 1.50698 * 109.47382 * 155.00101 * 9 7 4 20 20 C 1.38235 * 120.00319 * 142.58081 * 19 9 7 21 21 C 1.38232 * 120.00014 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00248 * 359.97438 * 21 20 19 23 23 C 1.38241 * 119.99623 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99958 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47458 * 60.00554 * 1 2 3 26 26 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47489 * 299.99663 * 1 2 3 28 28 H 1.08995 * 109.47385 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.46788 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46604 * 299.99969 * 3 2 1 31 31 H 1.08995 * 109.47243 * 59.99730 * 3 2 1 32 32 H 1.09010 * 109.46881 * 179.97438 * 6 4 2 33 33 H 1.08995 * 109.47364 * 299.99514 * 6 4 2 34 34 H 1.08995 * 109.47243 * 59.99856 * 6 4 2 35 35 H 0.97003 * 119.99925 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99935 * 0.25939 * 20 19 9 37 37 H 1.08005 * 119.99800 * 179.97438 * 21 20 19 38 38 H 1.07993 * 119.99797 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.99429 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99541 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 3.5470 -0.7206 1.2496 8 8 4.1510 -0.6291 0.2079 9 6 4.3002 -0.8342 2.5499 10 1 3.7530 -1.4859 3.2311 11 6 4.4435 0.5325 3.1686 12 1 4.0217 0.7311 4.1427 13 6 5.1130 1.5292 2.4908 14 7 5.6047 1.2946 1.2939 15 14 5.3215 3.2128 3.2728 16 1 6.5821 3.2417 4.0571 17 1 5.3757 4.2488 2.2103 18 1 4.1723 3.4864 4.1727 19 6 5.6669 -1.4136 2.2898 20 6 6.7589 -0.9559 3.0032 21 6 8.0123 -1.4878 2.7650 22 6 8.1738 -2.4778 1.8138 23 6 7.0815 -2.9363 1.1012 24 6 5.8279 -2.4051 1.3402 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.8937 -2.6776 2.1392 33 1 0.4400 -2.1638 1.2493 34 1 1.8933 -2.6775 0.3594 35 1 6.0754 1.9960 0.8169 36 1 6.6320 -0.1859 3.7499 37 1 8.8656 -1.1299 3.3221 38 1 9.1531 -2.8930 1.6275 39 1 7.2077 -3.7095 0.3578 40 1 4.9747 -2.7631 0.7831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = -42.735165 kcal Electronic energy + Delta-G solvation = -20507.835944 eV Core-core repulsion = 17672.472570 eV Total energy + Delta-G solvation = -2835.363374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84871 -39.24386 -36.73802 -35.35618 -32.76836 -31.58940 -31.38022 -29.16537 -27.98780 -25.93961 -24.83330 -23.03281 -22.41510 -21.00880 -19.71357 -18.23061 -17.30239 -17.04620 -16.44261 -16.04870 -15.45338 -15.27017 -15.08407 -15.00653 -14.30189 -14.18582 -13.93885 -13.84336 -13.23566 -13.12798 -13.03733 -12.99086 -12.78628 -12.73683 -12.52187 -12.38645 -12.03269 -11.78767 -11.74966 -11.47852 -11.37522 -11.27296 -11.08467 -10.61372 -9.64033 -9.40064 -9.04337 -7.99363 -6.20267 0.86941 0.94069 1.37929 1.42896 1.48742 1.95617 2.43848 3.22733 3.25967 3.74809 3.92249 4.13672 4.30714 4.34674 4.39502 4.50185 4.59616 4.65621 4.70614 4.78349 4.84933 4.92904 4.99103 5.02357 5.04579 5.12414 5.14072 5.16927 5.21558 5.39212 5.45519 5.49746 5.57178 5.60048 5.65562 5.77344 5.88185 5.96096 6.04525 6.43604 6.53078 6.82342 7.45430 7.55388 8.94649 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.010130 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.986967 B = 2763.358167 C = 3991.423025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.135 4.135 5 H 0.086 0.914 6 C -0.131 4.131 7 C 0.377 3.623 8 O -0.469 6.469 9 C 0.019 3.981 10 H 0.062 0.938 11 C -0.535 4.535 12 H 0.063 0.937 13 C 0.043 3.957 14 N -0.853 5.853 15 Si 0.926 3.074 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.265 1.265 19 C -0.023 4.023 20 C -0.098 4.098 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.252 0.748 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -5.587 0.485 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.154 4.154 5 H 0.105 0.895 6 C -0.189 4.189 7 C 0.253 3.747 8 O -0.342 6.342 9 C 0.000 4.000 10 H 0.080 0.920 11 C -0.572 4.572 12 H 0.081 0.919 13 C -0.163 4.163 14 N -0.486 5.486 15 Si 0.753 3.247 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.189 1.189 19 C -0.024 4.024 20 C -0.116 4.116 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.150 4.150 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.070 -5.455 -0.243 7.452 hybrid contribution 0.445 1.502 0.299 1.595 sum -4.625 -3.953 0.056 6.085 Atomic orbital electron populations 1.21842 0.92913 1.02675 1.02051 1.20861 0.96772 0.94977 0.96698 1.21831 1.01255 0.96863 1.00539 1.21766 0.94797 0.98971 0.99870 0.89535 1.21695 1.02480 0.92832 1.01851 1.24702 0.90596 0.69389 0.90053 1.90246 1.72030 1.36142 1.35805 1.18496 0.90726 0.96497 0.94272 0.92042 1.20795 1.37749 0.94842 1.03839 0.91903 1.25502 0.95087 1.00703 0.94981 1.70313 1.33952 1.32781 1.11585 0.86042 0.78861 0.81467 0.78371 1.20284 1.21999 1.18901 1.20068 0.96923 0.91981 0.93434 1.21034 0.92471 0.98113 1.00024 1.21297 0.97041 0.98225 0.99768 1.21144 0.98926 0.98725 0.97684 1.21182 0.92818 1.01160 1.00514 1.20981 0.97458 0.98194 0.98378 0.92225 0.90916 0.92298 0.92779 0.94177 0.92724 0.93530 0.92030 0.89226 0.93289 0.93839 0.87556 0.85719 0.84531 0.85230 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.84 71.98 0.64 -2.81 16 2 C -0.07 -2.54 2.14 -10.79 -0.02 -2.57 16 3 C -0.15 -5.73 8.91 71.98 0.64 -5.09 16 4 C -0.13 -4.85 2.24 -11.54 -0.03 -4.87 16 5 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 6 C -0.13 -3.70 8.82 71.98 0.64 -3.07 16 7 C 0.38 17.06 3.21 29.10 0.09 17.16 16 8 O -0.47 -24.26 11.94 -1.43 -0.02 -24.28 16 9 C 0.02 0.90 2.74 -13.03 -0.04 0.87 16 10 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 11 C -0.53 -26.93 7.31 25.60 0.19 -26.74 16 12 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 13 C 0.04 2.23 4.25 84.66 0.36 2.59 16 14 N -0.85 -47.41 10.09 21.45 0.22 -47.20 16 15 Si 0.93 41.87 29.54 68.60 2.03 43.90 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 19 C -0.02 -1.12 4.23 -19.87 -0.08 -1.20 16 20 C -0.10 -4.59 8.30 22.27 0.18 -4.41 16 21 C -0.15 -5.87 10.05 22.27 0.22 -5.64 16 22 C -0.15 -5.44 10.05 22.27 0.22 -5.21 16 23 C -0.14 -5.41 10.05 22.27 0.22 -5.18 16 24 C -0.13 -5.87 8.36 22.27 0.19 -5.68 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.54 6.43 -2.38 -0.02 1.52 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 29 H 0.04 1.91 6.46 -2.39 -0.02 1.90 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.09 1.97 6.43 -2.39 -0.02 1.95 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.11 5.20 6.53 -2.91 -0.02 5.18 16 37 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.10 4.31 6.93 -2.91 -0.02 4.29 16 Total: -1.00 -60.66 318.45 6.65 -54.01 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.00 Total: 25.43 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 3.43 Total: -51.86 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.22 Total: -47.20 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.02 Total: -24.28 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -60.66 6.65 -54.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.270 kcal (2) G-P(sol) polarization free energy of solvation -60.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds