Wall clock time and date at job start Mon Mar 30 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 C 1.50703 * 109.82403 * 59.30050 * 3 2 1 5 5 C 1.38251 * 120.00173 * 90.88568 * 4 3 2 6 6 C 1.38216 * 119.99937 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.00028 * 0.02562 * 6 5 4 8 8 C 1.38213 * 119.99921 * 359.95240 * 7 6 5 9 9 C 1.50706 * 119.99863 * 179.97438 * 8 7 6 10 10 C 1.38221 * 119.99615 * 271.09617 * 4 3 2 11 11 C 1.54383 * 109.83156 * 180.18551 * 3 2 1 12 12 C 1.55306 * 102.25071 * 98.24336 * 11 3 2 13 13 C 1.54941 * 100.94190 * 34.13630 * 12 11 3 14 14 H 1.09007 * 110.31316 * 82.46363 * 13 12 11 15 15 C 1.50699 * 110.31072 * 204.53541 * 13 12 11 16 16 H 1.08005 * 119.99860 * 359.97438 * 15 13 12 17 17 C 1.37885 * 120.00283 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99506 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00080 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47092 * 89.99778 * 19 17 15 21 21 H 1.48497 * 109.46930 * 209.99877 * 19 17 15 22 22 H 1.48500 * 109.47008 * 329.99980 * 19 17 15 23 23 O 1.43235 * 109.90432 * 298.36532 * 3 2 1 24 24 H 1.08995 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47033 * 299.99896 * 1 2 3 26 26 H 1.08999 * 109.47165 * 59.99718 * 1 2 3 27 27 H 1.08994 * 109.47254 * 239.99969 * 2 1 3 28 28 H 1.09006 * 109.47096 * 119.99884 * 2 1 3 29 29 H 1.08001 * 120.00215 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.99832 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.99925 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46953 * 89.99941 * 9 8 7 33 33 H 1.09000 * 109.47318 * 209.99539 * 9 8 7 34 34 H 1.09000 * 109.47161 * 330.00169 * 9 8 7 35 35 H 1.07997 * 120.00283 * 0.02562 * 10 4 3 36 36 H 1.08999 * 110.84631 * 216.43517 * 11 3 2 37 37 H 1.09003 * 110.84390 * 340.05508 * 11 3 2 38 38 H 1.09010 * 111.11857 * 152.05119 * 12 11 3 39 39 H 1.08989 * 111.12903 * 276.17088 * 12 11 3 40 40 H 0.97003 * 119.99377 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5280 2.1656 1.2190 5 6 2.2724 2.1696 2.3840 6 6 1.8025 2.8323 3.5022 7 6 0.5877 3.4909 3.4558 8 6 -0.1563 3.4873 2.2910 9 6 -1.4807 4.2047 2.2407 10 6 0.3120 2.8212 1.1736 11 6 3.5838 1.4522 -0.0047 12 6 3.9074 1.6735 -1.5075 13 6 2.7322 2.5910 -1.9293 14 1 2.9485 3.6270 -1.6684 15 6 2.4775 2.4675 -3.4095 16 1 3.0845 1.8047 -4.0085 17 6 1.4697 3.2008 -3.9992 18 7 0.7310 4.0083 -3.2700 19 14 1.1536 3.0472 -5.8339 20 1 0.1686 1.9629 -6.0774 21 1 0.6155 4.3304 -6.3525 22 1 2.4254 2.7262 -6.5301 23 8 1.5993 2.1155 -1.1851 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2211 1.6548 2.4204 30 1 2.3839 2.8350 4.4124 31 1 0.2204 4.0084 4.3296 32 1 -1.3238 5.2352 1.9218 33 1 -2.1397 3.7018 1.5330 34 1 -1.9364 4.1962 3.2308 35 1 -0.2713 2.8150 0.2648 36 1 3.9684 2.2735 0.6000 37 1 3.9787 0.4967 0.3406 38 1 4.8650 2.1791 -1.6327 39 1 3.8882 0.7321 -2.0563 40 1 0.0217 4.5238 -3.6848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379867193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:54 Heat of formation + Delta-G solvation = -38.529621 kcal Electronic energy + Delta-G solvation = -20269.986679 eV Core-core repulsion = 17434.805671 eV Total energy + Delta-G solvation = -2835.181008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73101 -37.75135 -33.73639 -32.32906 -31.98921 -30.91054 -30.08546 -27.80084 -26.42473 -24.77085 -22.18886 -22.01184 -21.48380 -20.08120 -18.61556 -16.53257 -16.27682 -15.11228 -15.00891 -14.70382 -14.46035 -14.13252 -13.57556 -13.36362 -12.86985 -12.73620 -12.57882 -12.34020 -11.99827 -11.77558 -11.70939 -11.54506 -11.21192 -10.96716 -10.89422 -10.76305 -10.55674 -10.50188 -10.25767 -10.08001 -9.84767 -9.59833 -9.06520 -8.56250 -8.24075 -8.14943 -7.89892 -5.99177 -4.11835 1.79055 1.89386 3.31537 3.38096 3.40537 4.21159 4.43344 4.87256 5.15423 5.22291 5.31192 5.42769 5.49347 5.50693 5.56500 5.71469 5.80874 5.86361 5.89992 5.98885 6.01247 6.10964 6.16644 6.28676 6.33218 6.43046 6.51528 6.53911 6.56583 6.64426 6.75264 6.78351 6.83238 6.93407 6.96908 7.10505 7.22424 7.51085 7.62931 7.90692 8.29255 8.67202 9.05177 9.58765 11.07885 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.007000 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.763553 B = 3998.791598 C = 4554.868752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.137 3.863 4 C -0.066 4.066 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.133 4.133 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.081 4.081 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.211 3.789 14 H 0.027 0.973 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.079 3.921 18 N -0.862 5.862 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.340 6.340 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -3.519 11.455 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.096 3.904 4 C -0.066 4.066 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.096 4.096 9 C -0.167 4.167 10 C -0.099 4.099 11 C -0.185 4.185 12 C -0.185 4.185 13 C 0.156 3.844 14 H 0.045 0.955 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.127 4.127 18 N -0.498 5.498 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.260 6.260 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.230 -3.350 11.388 11.873 hybrid contribution 0.061 -0.031 -0.845 0.848 sum -0.169 -3.381 10.543 11.073 Atomic orbital electron populations 1.21729 0.95770 1.00172 1.02722 1.21696 0.96792 0.95400 1.00956 1.20698 0.92034 0.91304 0.86403 1.20324 0.94425 0.97014 0.94870 1.20982 0.99798 1.00815 0.92976 1.20943 0.96434 0.99161 0.98032 1.20871 0.95557 1.01250 0.97456 1.19928 0.96934 0.98831 0.93924 1.20744 0.93970 1.00190 1.01801 1.21066 0.95900 0.95330 0.97643 1.23215 0.95545 1.01096 0.98600 1.23318 1.00505 1.01272 0.93356 1.20511 0.80684 0.92030 0.91143 0.95505 1.21098 1.18107 1.26322 0.91354 0.92057 1.25055 0.95483 0.94358 0.97783 1.70038 1.19251 1.25242 1.35250 0.86666 0.78581 0.77499 0.85630 1.20527 1.21180 1.19818 1.88831 1.32835 1.73172 1.31129 0.94097 0.93061 0.91274 0.91480 0.92765 0.86562 0.86871 0.87009 0.91383 0.91581 0.92270 0.84907 0.91381 0.91717 0.92076 0.91653 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.13 37.16 0.34 -2.23 16 2 C -0.11 -1.97 5.06 -26.73 -0.14 -2.10 16 3 C 0.14 2.71 0.77 -91.05 -0.07 2.64 16 4 C -0.07 -1.24 4.27 -104.62 -0.45 -1.68 16 5 C -0.13 -2.06 8.75 -39.58 -0.35 -2.41 16 6 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 7 C -0.13 -1.97 9.70 -39.58 -0.38 -2.35 16 8 C -0.10 -1.58 5.88 -104.62 -0.62 -2.19 16 9 C -0.11 -1.51 10.01 36.01 0.36 -1.14 16 10 C -0.08 -1.56 7.15 -39.58 -0.28 -1.84 16 11 C -0.15 -2.66 5.04 -24.78 -0.12 -2.79 16 12 C -0.15 -3.04 6.53 -24.48 -0.16 -3.20 16 13 C 0.21 5.43 3.22 -26.86 -0.09 5.35 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.53 -14.81 8.80 -34.44 -0.30 -15.11 16 16 H 0.06 1.67 7.76 -52.48 -0.41 1.26 16 17 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 18 N -0.86 -25.29 13.05 55.43 0.72 -24.56 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 O -0.34 -8.50 8.54 -35.23 -0.30 -8.80 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 26 H 0.07 1.39 7.75 -51.93 -0.40 0.98 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 1.67 6.82 -52.49 -0.36 1.31 16 30 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.13 2.84 7.48 -52.49 -0.39 2.45 16 36 H 0.07 1.19 6.85 -51.93 -0.36 0.84 16 37 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.06 1.34 8.04 -51.94 -0.42 0.92 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -29.79 320.34 -8.94 -38.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.42 Total: 2.70 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -2.75 Total: -29.20 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.72 Total: -24.56 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.30 Total: -8.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.79 -8.94 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379867193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.200 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds