Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47323 * 2 1 4 4 C 1.50693 * 109.89306 * 305.51838 * 3 2 1 5 5 C 1.38261 * 120.00179 * 269.20859 * 4 3 2 6 6 C 1.38214 * 119.99838 * 179.74841 * 5 4 3 7 7 C 1.38251 * 120.00157 * 0.54769 * 6 5 4 8 8 C 1.38212 * 120.00141 * 359.69943 * 7 6 5 9 9 C 1.50695 * 120.00370 * 180.02562 * 8 7 6 10 10 C 1.38219 * 120.00237 * 89.47842 * 4 3 2 11 11 C 1.54380 * 109.83172 * 184.58570 * 3 2 1 12 12 C 1.55305 * 102.25481 * 261.84256 * 11 3 2 13 13 C 1.54944 * 100.93982 * 325.86824 * 12 11 3 14 14 H 1.08998 * 110.39503 * 277.48879 * 13 12 11 15 15 C 1.50696 * 110.31188 * 155.36055 * 13 12 11 16 16 H 1.07998 * 119.99817 * 2.83049 * 15 13 12 17 17 C 1.37879 * 120.00359 * 182.83643 * 15 13 12 18 18 N 1.31510 * 119.99766 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00208 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46896 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46903 * 119.99389 * 19 17 15 22 22 H 1.48495 * 109.46965 * 239.99544 * 19 17 15 23 23 O 1.43236 * 109.82916 * 66.45255 * 3 2 1 24 24 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47239 * 300.00325 * 1 2 3 26 26 H 1.08998 * 109.46817 * 60.00530 * 1 2 3 27 27 H 1.08998 * 109.47239 * 239.99675 * 2 1 3 28 28 H 1.09004 * 109.47073 * 120.00139 * 2 1 3 29 29 H 1.08000 * 119.99483 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.99888 * 180.26969 * 6 5 4 31 31 H 1.08003 * 119.99830 * 179.73103 * 7 6 5 32 32 H 1.09003 * 109.47101 * 270.02908 * 9 8 7 33 33 H 1.09006 * 109.46873 * 30.02508 * 9 8 7 34 34 H 1.08992 * 109.47595 * 150.02284 * 9 8 7 35 35 H 1.07997 * 119.99145 * 0.02562 * 10 4 3 36 36 H 1.08995 * 110.84695 * 143.64818 * 11 3 2 37 37 H 1.09006 * 110.84467 * 20.02940 * 11 3 2 38 38 H 1.08995 * 111.12453 * 207.94796 * 12 11 3 39 39 H 1.09001 * 111.16140 * 83.80021 * 12 11 3 40 40 H 0.97006 * 120.00203 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4348 2.2004 -1.1533 5 6 2.0842 2.2368 -2.3734 6 6 1.5265 2.9276 -3.4327 7 6 0.3249 3.5916 -3.2691 8 6 -0.3217 3.5595 -2.0480 9 6 -1.6317 4.2828 -1.8697 10 6 0.2333 2.8638 -0.9900 11 6 3.5794 1.4538 -0.1161 12 6 4.0202 1.6314 1.3624 13 6 2.8829 2.5348 1.9019 14 1 3.0783 3.5787 1.6566 15 6 2.7433 2.3660 3.3928 16 1 3.4228 1.7201 3.9291 17 6 1.7481 3.0359 4.0724 18 7 0.9209 3.8226 3.4194 19 14 1.5746 2.8261 5.9205 20 1 2.6202 1.8936 6.4130 21 1 1.7334 4.1444 6.5853 22 1 0.2322 2.2730 6.2320 23 8 1.6945 2.0801 1.2352 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.0254 1.7224 -2.4997 30 1 2.0316 2.9524 -4.3871 31 1 -0.1087 4.1350 -4.0956 32 1 -1.4410 5.3031 -1.5368 33 1 -2.1668 4.3044 -2.8191 34 1 -2.2347 3.7641 -1.1246 35 1 -0.2714 2.8393 -0.0355 36 1 3.9164 2.2927 -0.7249 37 1 3.9449 0.5091 -0.5190 38 1 4.9853 2.1340 1.4270 39 1 4.0427 0.6745 1.8840 40 1 0.2209 4.2943 3.8975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379867195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = -53.401033 kcal Electronic energy + Delta-G solvation = -20285.467936 eV Core-core repulsion = 17449.642055 eV Total energy + Delta-G solvation = -2835.825881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18725 -39.22366 -35.45291 -34.06479 -33.45850 -32.55498 -31.37537 -29.56949 -27.70430 -26.52475 -23.81923 -23.41760 -22.82663 -21.77627 -20.05080 -18.60217 -17.61893 -16.74182 -16.66404 -16.32497 -15.90464 -15.61161 -15.03143 -14.63281 -14.39393 -14.27713 -14.06391 -13.87874 -13.63790 -13.36513 -12.98421 -12.85043 -12.75803 -12.62694 -12.44688 -12.35652 -12.28921 -12.01365 -11.85418 -11.73570 -11.30280 -11.21087 -10.92833 -10.69357 -9.79528 -9.53230 -9.38284 -8.12720 -6.33103 0.54258 0.62431 1.38119 1.39390 1.51479 2.40265 2.94628 3.05815 3.53785 3.77564 3.97892 4.02627 4.10112 4.18545 4.33735 4.36971 4.47831 4.54089 4.55717 4.62509 4.75754 4.79953 4.81640 4.91870 4.95038 4.98478 5.02075 5.04425 5.14594 5.23446 5.27469 5.35547 5.42918 5.45966 5.59556 5.67232 5.75749 5.82623 5.91272 6.20947 6.25977 6.64598 7.13344 7.42893 8.94619 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.007028 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.055013 B = 3982.929226 C = 4545.009088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.122 3.878 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.106 4.106 9 C -0.109 4.109 10 C -0.111 4.111 11 C -0.134 4.134 12 C -0.139 4.139 13 C 0.204 3.796 14 H -0.018 1.018 15 C -0.552 4.552 16 H 0.064 0.936 17 C 0.024 3.976 18 N -0.898 5.898 19 Si 0.957 3.043 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.282 1.282 23 O -0.369 6.369 24 H 0.065 0.935 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -4.041 -13.863 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.082 3.918 4 C -0.085 4.085 5 C -0.149 4.149 6 C -0.137 4.137 7 C -0.148 4.148 8 C -0.106 4.106 9 C -0.166 4.166 10 C -0.129 4.129 11 C -0.172 4.172 12 C -0.177 4.177 13 C 0.149 3.851 14 H 0.000 1.000 15 C -0.590 4.590 16 H 0.082 0.918 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.782 3.218 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.208 1.208 23 O -0.288 6.288 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.084 -3.899 -13.767 14.309 hybrid contribution -0.189 0.287 1.464 1.504 sum -0.272 -3.612 -12.303 12.825 Atomic orbital electron populations 1.21644 0.96046 1.01099 1.00736 1.21710 0.96534 0.94370 1.01982 1.21060 0.93704 0.92206 0.84871 1.20283 0.94991 0.97856 0.95383 1.21227 1.00528 1.01017 0.92161 1.21406 0.95837 0.97133 0.99331 1.21278 0.96143 1.00649 0.96753 1.20210 0.98105 0.98357 0.93933 1.20774 0.93209 0.99486 1.03112 1.20873 0.96396 0.97960 0.97705 1.23202 0.93858 1.03283 0.96813 1.23189 0.98981 1.00243 0.95250 1.20329 0.82163 0.91145 0.91502 1.00048 1.21540 1.16161 1.28739 0.92553 0.91823 1.25912 0.94992 0.93980 1.02883 1.70206 1.17564 1.28617 1.37131 0.85540 0.78066 0.78178 0.80014 1.18549 1.20257 1.20828 1.88768 1.32742 1.75868 1.31467 0.91584 0.95356 0.92895 0.89369 0.92521 0.84329 0.83018 0.83627 0.91517 0.89180 0.92660 0.89247 0.90737 0.88053 0.90748 0.91478 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.04 71.98 0.65 -4.24 16 2 C -0.11 -3.79 5.11 30.60 0.16 -3.64 16 3 C 0.12 4.87 0.78 -11.07 -0.01 4.86 16 4 C -0.08 -3.17 4.10 -19.87 -0.08 -3.25 16 5 C -0.13 -3.89 8.75 22.27 0.19 -3.70 16 6 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 7 C -0.13 -3.45 9.70 22.27 0.22 -3.23 16 8 C -0.11 -3.44 5.88 -19.87 -0.12 -3.55 16 9 C -0.11 -2.97 10.01 71.23 0.71 -2.25 16 10 C -0.11 -4.44 7.16 22.27 0.16 -4.28 16 11 C -0.13 -4.64 5.04 31.85 0.16 -4.48 16 12 C -0.14 -5.74 6.53 32.05 0.21 -5.53 16 13 C 0.20 10.99 3.27 30.51 0.10 11.09 16 14 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 15 C -0.55 -31.96 8.80 25.60 0.23 -31.73 16 16 H 0.06 3.54 7.77 -2.91 -0.02 3.52 16 17 C 0.02 1.42 5.42 84.66 0.46 1.88 16 18 N -0.90 -55.54 12.93 21.45 0.28 -55.26 16 19 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 O -0.37 -19.48 8.55 -148.98 -1.27 -20.76 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 1.19 7.88 -2.39 -0.02 1.17 16 26 H 0.05 1.83 6.16 -2.39 -0.01 1.82 16 27 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.14 3.41 6.82 -2.91 -0.02 3.39 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.84 8.09 -2.38 -0.02 1.83 16 34 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.09 4.28 7.50 -2.91 -0.02 4.26 16 36 H 0.07 2.47 6.86 -2.39 -0.02 2.45 16 37 H 0.10 2.76 7.79 -2.38 -0.02 2.74 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.73 8.05 -2.39 -0.02 2.71 16 40 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -69.25 320.22 5.29 -63.96 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.00 Total: 19.77 kcal Atomic # 6 Polarization: -58.11 SS G_CDS: 3.26 Total: -54.85 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.27 Total: -20.76 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.25 5.29 -63.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379867195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.563 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds