Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 C 1.50702 * 109.86666 * 306.00759 * 3 2 1 5 5 C 1.38257 * 119.99962 * 268.71823 * 4 3 2 6 6 C 1.38213 * 119.99852 * 179.79125 * 5 4 3 7 7 C 1.38254 * 120.00146 * 0.46231 * 6 5 4 8 8 C 1.38220 * 119.99846 * 359.76808 * 7 6 5 9 9 C 1.50694 * 119.99946 * 179.97438 * 8 7 6 10 10 C 1.38215 * 120.00011 * 88.99543 * 4 3 2 11 11 C 1.54098 * 109.87833 * 185.00260 * 3 2 1 12 12 C 1.54813 * 104.30472 * 242.53826 * 11 3 2 13 13 C 1.55353 * 101.93011 * 20.91817 * 12 11 3 14 14 H 1.09005 * 110.63681 * 81.46830 * 13 12 11 15 15 C 1.50694 * 110.58525 * 204.45419 * 13 12 11 16 16 H 1.08004 * 120.00254 * 355.52097 * 15 13 12 17 17 C 1.37881 * 120.00328 * 175.52123 * 15 13 12 18 18 N 1.31519 * 119.99399 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00288 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47484 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47084 * 119.99905 * 19 17 15 22 22 H 1.48506 * 109.47125 * 239.99712 * 19 17 15 23 23 O 1.43743 * 109.87686 * 67.16589 * 3 2 1 24 24 H 1.08999 * 109.47196 * 299.99602 * 1 2 3 25 25 H 1.08997 * 109.47405 * 60.00437 * 1 2 3 26 26 H 1.09009 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47279 * 239.99964 * 2 1 3 28 28 H 1.09002 * 109.47507 * 120.00032 * 2 1 3 29 29 H 1.08000 * 120.00216 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.00235 * 180.25296 * 6 5 4 31 31 H 1.07994 * 120.00428 * 179.79093 * 7 6 5 32 32 H 1.09001 * 109.47858 * 270.02534 * 9 8 7 33 33 H 1.09000 * 109.47363 * 30.02803 * 9 8 7 34 34 H 1.08998 * 109.46955 * 150.02395 * 9 8 7 35 35 H 1.07998 * 119.99723 * 359.97438 * 10 4 3 36 36 H 1.09002 * 110.48969 * 1.28162 * 11 3 2 37 37 H 1.09002 * 110.48612 * 123.79829 * 11 3 2 38 38 H 1.09001 * 110.90927 * 139.14314 * 12 11 3 39 39 H 1.08998 * 110.91012 * 262.75131 * 12 11 3 40 40 H 0.97000 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4250 2.2031 -1.1465 5 6 2.0694 2.2512 -2.3688 6 6 1.5033 2.9451 -3.4216 7 6 0.2975 3.5992 -3.2497 8 6 -0.3444 3.5551 -2.0263 9 6 -1.6584 4.2685 -1.8387 10 6 0.2198 2.8574 -0.9745 11 6 3.5757 1.4553 -0.1264 12 6 4.0622 2.1113 1.1888 13 6 2.8401 1.9000 2.1244 14 1 2.8464 0.8937 2.5432 15 6 2.8280 2.9328 3.2216 16 1 3.6443 3.6342 3.3122 17 6 1.7747 2.9826 4.1101 18 7 0.7809 2.1282 4.0001 19 14 1.7594 4.2633 5.4697 20 1 2.9838 5.0983 5.3772 21 1 0.5593 5.1258 5.3237 22 1 1.7229 3.5836 6.7896 23 8 1.7082 2.0782 1.2459 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0132 1.7434 -2.5021 30 1 2.0046 2.9793 -4.3776 31 1 -0.1432 4.1442 -4.0712 32 1 -1.4735 5.2879 -1.5001 33 1 -2.1973 4.2925 -2.7859 34 1 -2.2551 3.7410 -1.0945 35 1 -0.2815 2.8232 -0.0185 36 1 3.9601 0.4388 -0.2107 37 1 3.8827 2.0509 -0.9861 38 1 4.9436 1.5999 1.5758 39 1 4.2627 3.1727 1.0431 40 1 0.0398 2.1634 4.6249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379867196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = -35.928912 kcal Electronic energy + Delta-G solvation = -20268.723430 eV Core-core repulsion = 17433.655197 eV Total energy + Delta-G solvation = -2835.068233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77291 -37.78341 -33.69336 -32.37930 -31.99256 -30.85157 -30.10437 -27.81262 -26.45879 -24.80414 -22.33555 -22.00390 -21.58012 -19.82140 -18.58204 -16.79952 -16.06330 -15.41389 -14.91165 -14.58112 -14.40741 -14.03221 -13.60344 -13.35141 -13.28751 -12.78529 -12.57630 -12.26668 -11.99353 -11.90691 -11.59812 -11.56440 -11.21328 -11.06291 -10.89552 -10.61939 -10.50506 -10.45285 -10.15774 -10.11958 -9.83160 -9.58557 -9.04405 -8.60269 -8.28518 -8.20744 -7.96537 -6.00859 -4.12418 1.74489 1.84392 3.30024 3.38133 3.41921 4.16397 4.42834 4.88534 5.11747 5.17424 5.31315 5.39766 5.47783 5.54424 5.63076 5.69779 5.78861 5.83002 5.84406 5.98645 6.01208 6.09695 6.11330 6.32479 6.37194 6.44193 6.50225 6.52070 6.56673 6.67315 6.74721 6.80057 6.82882 6.91707 6.99704 7.08749 7.18672 7.45629 7.54749 7.89951 8.25480 8.60453 8.99693 9.57534 11.06655 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.007111 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.817581 B = 3936.498819 C = 4429.064182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.132 3.868 4 C -0.050 4.050 5 C -0.128 4.128 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.096 4.096 9 C -0.111 4.111 10 C -0.085 4.085 11 C -0.150 4.150 12 C -0.148 4.148 13 C 0.211 3.789 14 H 0.025 0.975 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.334 6.334 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -0.887 -12.293 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.090 3.910 4 C -0.050 4.050 5 C -0.146 4.146 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.096 4.096 9 C -0.168 4.168 10 C -0.103 4.103 11 C -0.188 4.188 12 C -0.185 4.185 13 C 0.156 3.844 14 H 0.043 0.957 15 C -0.566 4.566 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.497 5.497 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.253 6.253 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.028 -0.843 -12.161 12.234 hybrid contribution 0.179 0.549 0.629 0.854 sum -0.849 -0.294 -11.532 11.567 Atomic orbital electron populations 1.21748 0.95698 1.00279 1.02640 1.21863 0.96937 0.96056 1.00986 1.20720 0.92178 0.91128 0.86925 1.19922 0.94498 0.96550 0.94074 1.21012 0.99932 1.00738 0.92947 1.20947 0.96125 0.98909 0.98400 1.20878 0.96174 1.01217 0.96843 1.19922 0.97055 0.98787 0.93854 1.20748 0.94017 1.00121 1.01885 1.21057 0.95273 0.95503 0.98480 1.23140 0.95570 1.00586 0.99502 1.23259 1.00251 1.00065 0.94972 1.20712 0.79694 0.96569 0.87444 0.95694 1.21024 1.06864 1.18100 1.10591 0.91831 1.25050 0.95282 0.95341 0.97082 1.70047 1.08711 1.35039 1.35939 0.86592 0.78140 0.81794 0.81777 1.19671 1.20885 1.20936 1.89279 1.41276 1.75088 1.19685 0.91004 0.93236 0.94126 0.92946 0.91455 0.86272 0.86765 0.86941 0.91443 0.92165 0.91539 0.85020 0.91918 0.91421 0.92360 0.91808 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.00 37.16 0.33 -2.31 16 2 C -0.12 -2.22 4.97 -26.73 -0.13 -2.35 16 3 C 0.13 2.64 0.70 -91.20 -0.06 2.57 16 4 C -0.05 -0.93 4.14 -104.62 -0.43 -1.37 16 5 C -0.13 -2.04 8.74 -39.58 -0.35 -2.39 16 6 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 7 C -0.13 -1.90 9.70 -39.58 -0.38 -2.29 16 8 C -0.10 -1.53 5.88 -104.63 -0.62 -2.14 16 9 C -0.11 -1.45 10.01 36.00 0.36 -1.09 16 10 C -0.09 -1.59 7.13 -39.58 -0.28 -1.88 16 11 C -0.15 -2.76 5.75 -25.20 -0.14 -2.90 16 12 C -0.15 -3.12 6.58 -24.53 -0.16 -3.28 16 13 C 0.21 5.41 3.08 -26.64 -0.08 5.32 16 14 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 15 C -0.53 -14.81 8.83 -34.44 -0.30 -15.11 16 16 H 0.06 1.75 7.78 -52.48 -0.41 1.34 16 17 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 18 N -0.86 -25.09 12.95 55.43 0.72 -24.37 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 O -0.33 -8.41 8.84 -35.23 -0.31 -8.72 16 24 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 25 H 0.05 0.85 6.14 -51.93 -0.32 0.53 16 26 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.32 7.99 -51.93 -0.41 0.90 16 29 H 0.12 1.69 6.41 -52.49 -0.34 1.36 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.13 2.75 7.51 -52.49 -0.39 2.35 16 36 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 37 H 0.07 1.13 5.74 -51.93 -0.30 0.83 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -29.76 319.05 -8.88 -38.64 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.33 Total: 2.56 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.75 Total: -29.30 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.72 Total: -24.37 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.31 Total: -8.72 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.76 -8.88 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379867196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds