Wall clock time and date at job start Mon Mar 30 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 C 1.50702 * 109.86666 * 306.00759 * 3 2 1 5 5 C 1.38257 * 119.99962 * 268.71823 * 4 3 2 6 6 C 1.38213 * 119.99852 * 179.79125 * 5 4 3 7 7 C 1.38254 * 120.00146 * 0.46231 * 6 5 4 8 8 C 1.38220 * 119.99846 * 359.76808 * 7 6 5 9 9 C 1.50694 * 119.99946 * 179.97438 * 8 7 6 10 10 C 1.38215 * 120.00011 * 88.99543 * 4 3 2 11 11 C 1.54098 * 109.87833 * 185.00260 * 3 2 1 12 12 C 1.54813 * 104.30472 * 242.53826 * 11 3 2 13 13 C 1.55353 * 101.93011 * 20.91817 * 12 11 3 14 14 H 1.09005 * 110.63681 * 81.46830 * 13 12 11 15 15 C 1.50694 * 110.58525 * 204.45419 * 13 12 11 16 16 H 1.08004 * 120.00254 * 355.52097 * 15 13 12 17 17 C 1.37881 * 120.00328 * 175.52123 * 15 13 12 18 18 N 1.31519 * 119.99399 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00288 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47484 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47084 * 119.99905 * 19 17 15 22 22 H 1.48506 * 109.47125 * 239.99712 * 19 17 15 23 23 O 1.43743 * 109.87686 * 67.16589 * 3 2 1 24 24 H 1.08999 * 109.47196 * 299.99602 * 1 2 3 25 25 H 1.08997 * 109.47405 * 60.00437 * 1 2 3 26 26 H 1.09009 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47279 * 239.99964 * 2 1 3 28 28 H 1.09002 * 109.47507 * 120.00032 * 2 1 3 29 29 H 1.08000 * 120.00216 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.00235 * 180.25296 * 6 5 4 31 31 H 1.07994 * 120.00428 * 179.79093 * 7 6 5 32 32 H 1.09001 * 109.47858 * 270.02534 * 9 8 7 33 33 H 1.09000 * 109.47363 * 30.02803 * 9 8 7 34 34 H 1.08998 * 109.46955 * 150.02395 * 9 8 7 35 35 H 1.07998 * 119.99723 * 359.97438 * 10 4 3 36 36 H 1.09002 * 110.48969 * 1.28162 * 11 3 2 37 37 H 1.09002 * 110.48612 * 123.79829 * 11 3 2 38 38 H 1.09001 * 110.90927 * 139.14314 * 12 11 3 39 39 H 1.08998 * 110.91012 * 262.75131 * 12 11 3 40 40 H 0.97000 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4250 2.2031 -1.1465 5 6 2.0694 2.2512 -2.3688 6 6 1.5033 2.9451 -3.4216 7 6 0.2975 3.5992 -3.2497 8 6 -0.3444 3.5551 -2.0263 9 6 -1.6584 4.2685 -1.8387 10 6 0.2198 2.8574 -0.9745 11 6 3.5757 1.4553 -0.1264 12 6 4.0622 2.1113 1.1888 13 6 2.8401 1.9000 2.1244 14 1 2.8464 0.8937 2.5432 15 6 2.8280 2.9328 3.2216 16 1 3.6443 3.6342 3.3122 17 6 1.7747 2.9826 4.1101 18 7 0.7809 2.1282 4.0001 19 14 1.7594 4.2633 5.4697 20 1 2.9838 5.0983 5.3772 21 1 0.5593 5.1258 5.3237 22 1 1.7229 3.5836 6.7896 23 8 1.7082 2.0782 1.2459 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0132 1.7434 -2.5021 30 1 2.0046 2.9793 -4.3776 31 1 -0.1432 4.1442 -4.0712 32 1 -1.4735 5.2879 -1.5001 33 1 -2.1973 4.2925 -2.7859 34 1 -2.2551 3.7410 -1.0945 35 1 -0.2815 2.8232 -0.0185 36 1 3.9601 0.4388 -0.2107 37 1 3.8827 2.0509 -0.9861 38 1 4.9436 1.5999 1.5758 39 1 4.2627 3.1727 1.0431 40 1 0.0398 2.1634 4.6249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379867196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:58 Heat of formation + Delta-G solvation = -51.417585 kcal Electronic energy + Delta-G solvation = -20269.395069 eV Core-core repulsion = 17433.655197 eV Total energy + Delta-G solvation = -2835.739872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21252 -39.24984 -35.40965 -34.07126 -33.50786 -32.49626 -31.41885 -29.56881 -27.71017 -26.56020 -24.04441 -23.38104 -22.87311 -21.52981 -20.01815 -18.73025 -17.54231 -17.00363 -16.63282 -16.17197 -15.84453 -15.51985 -15.03530 -14.91447 -14.46486 -14.33786 -13.98015 -13.88239 -13.72204 -13.32533 -13.01294 -12.87426 -12.75720 -12.62336 -12.51266 -12.31845 -12.17536 -11.96082 -11.84768 -11.71175 -11.30654 -11.23732 -10.95359 -10.71239 -9.89186 -9.54638 -9.38584 -8.15329 -6.34695 0.52939 0.60632 1.37390 1.38801 1.50902 2.39275 2.92829 3.05611 3.54570 3.76904 3.98419 4.05592 4.09825 4.20347 4.29931 4.35540 4.44125 4.51437 4.53372 4.61017 4.77806 4.80591 4.81079 4.86376 4.95792 4.98076 5.01246 5.08043 5.13162 5.20833 5.25113 5.34913 5.41636 5.43925 5.56144 5.66196 5.75310 5.80193 5.88198 6.18819 6.24077 6.61328 7.01872 7.39767 8.92429 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.007111 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.817581 B = 3936.498819 C = 4429.064182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.120 3.880 4 C -0.071 4.071 5 C -0.132 4.132 6 C -0.116 4.116 7 C -0.129 4.129 8 C -0.103 4.103 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.203 3.797 14 H -0.007 1.007 15 C -0.552 4.552 16 H 0.062 0.938 17 C 0.025 3.975 18 N -0.896 5.896 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.274 1.274 23 O -0.366 6.366 24 H 0.028 0.972 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -0.230 -15.168 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.079 3.921 4 C -0.071 4.071 5 C -0.150 4.150 6 C -0.134 4.134 7 C -0.147 4.147 8 C -0.103 4.103 9 C -0.167 4.167 10 C -0.133 4.133 11 C -0.178 4.178 12 C -0.179 4.179 13 C 0.148 3.852 14 H 0.010 0.990 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.177 4.177 18 N -0.533 5.533 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.200 1.200 23 O -0.286 6.286 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.158 -0.189 -15.041 15.043 hybrid contribution -0.121 0.333 1.442 1.484 sum -0.279 0.144 -13.599 13.603 Atomic orbital electron populations 1.21620 0.95842 1.00973 1.00850 1.21857 0.96831 0.95504 1.01439 1.21017 0.93699 0.91778 0.85583 1.19877 0.94915 0.97606 0.94708 1.21238 1.00574 1.01062 0.92113 1.21408 0.95749 0.96945 0.99296 1.21295 0.96056 1.00586 0.96728 1.20204 0.98012 0.98249 0.93862 1.20791 0.93063 0.99665 1.03186 1.20868 0.96264 0.98231 0.97925 1.23135 0.94034 1.02063 0.98528 1.23132 0.98958 1.00154 0.95630 1.20549 0.82163 0.94158 0.88348 0.98964 1.21426 1.06975 1.18529 1.12022 0.91995 1.25895 0.94883 0.97372 0.99545 1.70188 1.09335 1.36800 1.36981 0.85536 0.78212 0.79164 0.78885 1.18741 1.20823 1.19965 1.89205 1.41524 1.75993 1.21852 0.95256 0.92537 0.92013 0.89591 0.93536 0.84183 0.82903 0.83493 0.91189 0.89208 0.92647 0.89195 0.89583 0.89117 0.90702 0.92601 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.00 71.98 0.65 -4.42 16 2 C -0.12 -4.40 4.97 30.59 0.15 -4.25 16 3 C 0.12 4.84 0.70 -11.17 -0.01 4.84 16 4 C -0.07 -2.59 4.14 -19.86 -0.08 -2.68 16 5 C -0.13 -3.79 8.74 22.27 0.19 -3.60 16 6 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 7 C -0.13 -3.20 9.70 22.27 0.22 -2.99 16 8 C -0.10 -3.16 5.88 -19.87 -0.12 -3.28 16 9 C -0.11 -2.79 10.01 71.23 0.71 -2.07 16 10 C -0.11 -4.41 7.13 22.27 0.16 -4.25 16 11 C -0.14 -4.94 5.75 31.58 0.18 -4.76 16 12 C -0.14 -5.97 6.58 32.02 0.21 -5.76 16 13 C 0.20 10.91 3.08 30.65 0.09 11.01 16 14 H -0.01 -0.42 8.03 -2.38 -0.02 -0.44 16 15 C -0.55 -32.19 8.83 25.60 0.23 -31.96 16 16 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16 17 C 0.03 1.48 5.42 84.66 0.46 1.94 16 18 N -0.90 -54.93 12.95 21.45 0.28 -54.65 16 19 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 O -0.37 -19.45 8.84 -148.98 -1.32 -20.76 16 24 H 0.03 1.31 7.91 -2.39 -0.02 1.29 16 25 H 0.06 2.00 6.14 -2.39 -0.01 1.99 16 26 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.05 1.88 7.99 -2.39 -0.02 1.87 16 29 H 0.14 3.36 6.41 -2.91 -0.02 3.34 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.09 4.12 7.51 -2.91 -0.02 4.10 16 36 H 0.09 2.60 7.70 -2.39 -0.02 2.59 16 37 H 0.09 2.76 5.74 -2.39 -0.01 2.75 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.75 319.05 5.26 -63.49 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.00 Total: 19.50 kcal Atomic # 6 Polarization: -58.08 SS G_CDS: 3.27 Total: -54.81 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.28 Total: -54.65 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.32 Total: -20.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.75 5.26 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379867196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.076 kcal (2) G-P(sol) polarization free energy of solvation -68.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds