Wall clock time and date at job start Mon Mar 30 2020 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.53003 * 113.38232 * 313.08427 * 3 2 1 5 5 C 1.53510 * 114.17215 * 180.02562 * 3 2 1 6 6 N 1.47484 * 87.93074 * 220.33127 * 5 3 2 7 7 C 1.39850 * 110.99779 * 138.70491 * 6 5 3 8 8 C 1.39611 * 119.83689 * 217.23144 * 7 6 5 9 9 C 1.38051 * 120.54744 * 180.27654 * 8 7 6 10 10 C 1.38742 * 120.22396 * 359.44359 * 9 8 7 11 11 N 1.38865 * 120.16413 * 180.27154 * 10 9 8 12 12 C 1.41561 * 119.67029 * 0.57308 * 10 9 8 13 13 C 1.41020 * 120.26620 * 179.68149 * 12 10 9 14 14 H 1.07997 * 120.00381 * 25.96266 * 13 12 10 15 15 C 1.39893 * 119.99797 * 205.96080 * 13 12 10 16 16 N 1.30894 * 120.00186 * 14.76694 * 15 13 12 17 17 Si 1.86800 * 119.99634 * 194.76793 * 15 13 12 18 18 H 1.48506 * 109.47277 * 60.00197 * 17 15 13 19 19 H 1.48502 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47215 * 300.00115 * 17 15 13 21 21 C 1.38005 * 119.84385 * 37.25341 * 7 6 5 22 22 C 1.47471 * 87.83707 * 27.00777 * 6 5 3 23 23 H 1.09004 * 109.47514 * 59.99848 * 1 2 3 24 24 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46904 * 299.99809 * 1 2 3 26 26 H 1.09000 * 109.46904 * 240.00191 * 2 1 3 27 27 H 1.08995 * 109.46948 * 120.00096 * 2 1 3 28 28 H 1.09003 * 109.47011 * 286.91604 * 4 3 2 29 29 H 1.08998 * 109.47484 * 46.91195 * 4 3 2 30 30 H 1.08996 * 109.46891 * 166.92174 * 4 3 2 31 31 H 1.09000 * 113.47539 * 105.56338 * 5 3 2 32 32 H 1.09005 * 113.52533 * 335.10712 * 5 3 2 33 33 H 1.08001 * 119.71947 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.88718 * 179.69991 * 9 8 7 35 35 H 0.97004 * 119.99813 * 186.01057 * 11 10 9 36 36 H 0.96992 * 119.99932 * 6.01841 * 11 10 9 37 37 H 0.96998 * 120.00111 * 174.98074 * 16 15 13 38 38 H 1.07994 * 120.11337 * 359.97438 * 21 7 6 39 39 H 1.09006 * 113.47608 * 87.75660 * 22 6 5 40 40 H 1.09005 * 113.47705 * 218.22366 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3380 2.3348 -1.0257 5 6 3.5699 1.5684 -0.0006 6 7 3.4252 2.6836 0.9535 7 6 4.3968 2.6140 1.9570 8 6 4.0697 2.9708 3.2665 9 6 5.0188 2.9130 4.2673 10 6 6.3084 2.4873 3.9832 11 7 7.2606 2.4243 4.9920 12 6 6.6504 2.1237 2.6585 13 6 7.9592 1.6958 2.3543 14 1 8.5722 1.2460 3.1213 15 6 8.4634 1.8538 1.0590 16 7 7.8547 2.6441 0.2116 17 14 10.0056 0.9369 0.5389 18 1 9.7762 -0.5254 0.6587 19 1 10.3294 1.2728 -0.8709 20 1 11.1368 1.3339 1.4152 21 6 5.6743 2.1933 1.6479 22 6 2.1616 2.0662 1.3974 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6804 2.0755 -2.0275 29 1 0.2603 2.1853 -0.9601 30 1 1.5732 3.3790 -0.8202 31 1 3.9803 1.8714 -0.9639 32 1 4.0780 0.7004 0.4197 33 1 3.0671 3.2994 3.4974 34 1 4.7554 3.1961 5.2758 35 1 8.1820 2.2109 4.7766 36 1 7.0043 2.5936 5.9120 37 1 8.2433 2.8107 -0.6614 38 1 5.9236 1.9180 0.6339 39 1 2.2930 1.3308 2.1912 40 1 1.3784 2.7913 1.6190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382003994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:11 Heat of formation + Delta-G solvation = 48.028635 kcal Electronic energy + Delta-G solvation = -19735.646960 eV Core-core repulsion = 16936.512151 eV Total energy + Delta-G solvation = -2799.134810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44160 -37.46254 -34.41485 -33.53314 -32.19852 -29.54157 -29.22211 -27.11537 -26.12450 -24.75901 -24.51472 -22.27185 -20.92625 -19.32613 -17.98910 -17.15423 -16.00524 -15.54281 -15.32895 -14.90062 -14.68432 -14.39456 -13.96446 -13.25595 -12.94852 -12.65950 -12.43145 -12.34501 -12.12408 -11.70601 -11.68704 -11.45063 -11.32177 -11.12190 -11.06500 -10.98719 -10.63249 -10.41851 -10.24841 -9.91142 -9.75294 -9.43860 -9.25439 -9.10421 -8.16596 -7.31601 -6.62236 -5.99061 -4.12337 2.85288 3.10166 3.12226 3.15871 3.25598 3.99363 4.61011 4.64631 4.81293 5.05200 5.26800 5.31787 5.43427 5.56818 5.70155 5.76059 5.82488 5.92897 6.01217 6.04481 6.12924 6.19057 6.22973 6.27734 6.31551 6.40072 6.50534 6.54579 6.55490 6.75024 7.06278 7.24690 7.27451 7.53070 7.68674 7.78172 8.01391 8.24948 8.34318 8.63834 8.83911 8.89700 9.14290 9.21547 10.34597 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.006425 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.874029 B = 4356.597906 C = 5307.995895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.098 4.098 4 C -0.121 4.121 5 C 0.021 3.979 6 N -0.422 5.422 7 C 0.032 3.968 8 C -0.204 4.204 9 C -0.170 4.170 10 C 0.108 3.892 11 N -0.886 5.886 12 C 0.074 3.926 13 C -0.465 4.465 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.800 5.800 17 Si 0.905 3.095 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.154 4.154 22 C 0.018 3.982 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.390 0.610 36 H 0.376 0.624 37 H 0.277 0.723 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -3.880 -0.927 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.098 4.098 4 C -0.178 4.178 5 C -0.107 4.107 6 N -0.138 5.138 7 C -0.064 4.064 8 C -0.226 4.226 9 C -0.194 4.194 10 C 0.006 3.994 11 N -0.428 5.428 12 C 0.068 3.932 13 C -0.496 4.496 14 H 0.089 0.911 15 C -0.141 4.141 16 N -0.427 5.427 17 Si 0.730 3.270 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.177 4.177 22 C -0.110 4.110 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.219 0.781 36 H 0.201 0.799 37 H 0.088 0.912 38 H 0.145 0.855 39 H 0.087 0.913 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.500 -3.117 -1.507 9.178 hybrid contribution 1.216 -0.907 0.420 1.575 sum -7.283 -4.024 -1.086 8.392 Atomic orbital electron populations 1.21804 0.96072 1.00972 1.01872 1.21427 0.95687 0.95422 1.01949 1.22100 0.96136 0.95081 0.96524 1.21522 0.99246 0.99694 0.97346 1.23843 0.94318 0.94135 0.98450 1.66312 1.02390 1.34798 1.10284 1.19059 0.93117 1.03885 0.90383 1.19825 0.97940 1.12967 0.91829 1.19821 0.93087 1.09146 0.97324 1.17963 0.89152 1.02287 0.89969 1.41882 1.10252 1.84211 1.06415 1.17109 0.93501 0.93611 0.88954 1.19104 0.98745 1.36746 0.95014 0.91070 1.25780 0.98326 0.93916 0.96128 1.69821 1.37421 1.27937 1.07518 0.86435 0.81670 0.80860 0.78037 1.19124 1.20499 1.19348 1.20961 0.90063 1.06317 1.00354 1.23866 0.94317 0.97308 0.95529 0.92433 0.93295 0.92769 0.91946 0.91887 0.92805 0.92491 0.91660 0.90495 0.90931 0.89475 0.89483 0.78122 0.79923 0.91165 0.85546 0.91348 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.27 37.16 0.34 -1.23 16 2 C -0.11 -1.35 5.59 -26.73 -0.15 -1.50 16 3 C -0.10 -1.45 1.18 -153.98 -0.18 -1.63 16 4 C -0.12 -1.59 8.89 37.16 0.33 -1.26 16 5 C 0.02 0.38 5.62 -7.55 -0.04 0.34 16 6 N -0.42 -8.77 6.33 -180.55 -1.14 -9.91 16 7 C 0.03 0.77 5.33 -83.77 -0.45 0.32 16 8 C -0.20 -4.72 9.00 -39.14 -0.35 -5.07 16 9 C -0.17 -3.90 9.87 -39.46 -0.39 -4.29 16 10 C 0.11 2.60 6.79 -83.22 -0.56 2.04 16 11 N -0.89 -17.95 8.97 32.75 0.29 -17.66 16 12 C 0.07 1.96 5.58 -106.66 -0.60 1.36 16 13 C -0.47 -12.16 8.45 -37.91 -0.32 -12.49 16 14 H 0.07 1.76 6.77 -52.49 -0.36 1.41 16 15 C 0.07 1.89 5.19 -17.33 -0.09 1.80 16 16 N -0.80 -21.13 10.86 55.55 0.60 -20.53 16 17 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.15 -4.05 7.38 -38.75 -0.29 -4.33 16 22 C 0.02 0.30 5.77 -7.55 -0.04 0.26 16 23 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 30 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 31 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 32 H 0.07 1.44 7.26 -51.93 -0.38 1.06 16 33 H 0.09 1.86 7.54 -52.49 -0.40 1.46 16 34 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.39 7.76 7.11 -40.82 -0.29 7.47 16 36 H 0.38 6.40 8.84 -40.82 -0.36 6.04 16 37 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 38 H 0.13 3.44 5.22 -52.49 -0.27 3.17 16 39 H 0.07 1.21 7.43 -51.93 -0.39 0.83 16 40 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -28.20 314.43 -9.31 -37.51 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -5.99 Total: 17.64 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -2.79 Total: -25.68 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.24 Total: -48.10 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.20 -9.31 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382003994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.538 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds