Wall clock time and date at job start Mon Mar 30 2020 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.53003 * 113.38232 * 313.08427 * 3 2 1 5 5 C 1.53510 * 114.17215 * 180.02562 * 3 2 1 6 6 N 1.47484 * 87.93074 * 220.33127 * 5 3 2 7 7 C 1.39850 * 110.99779 * 138.70491 * 6 5 3 8 8 C 1.39611 * 119.83689 * 217.23144 * 7 6 5 9 9 C 1.38051 * 120.54744 * 180.27654 * 8 7 6 10 10 C 1.38742 * 120.22396 * 359.44359 * 9 8 7 11 11 N 1.38865 * 120.16413 * 180.27154 * 10 9 8 12 12 C 1.41561 * 119.67029 * 0.57308 * 10 9 8 13 13 C 1.41020 * 120.26620 * 179.68149 * 12 10 9 14 14 H 1.07997 * 120.00381 * 25.96266 * 13 12 10 15 15 C 1.39893 * 119.99797 * 205.96080 * 13 12 10 16 16 N 1.30894 * 120.00186 * 14.76694 * 15 13 12 17 17 Si 1.86800 * 119.99634 * 194.76793 * 15 13 12 18 18 H 1.48506 * 109.47277 * 60.00197 * 17 15 13 19 19 H 1.48502 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47215 * 300.00115 * 17 15 13 21 21 C 1.38005 * 119.84385 * 37.25341 * 7 6 5 22 22 C 1.47471 * 87.83707 * 27.00777 * 6 5 3 23 23 H 1.09004 * 109.47514 * 59.99848 * 1 2 3 24 24 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46904 * 299.99809 * 1 2 3 26 26 H 1.09000 * 109.46904 * 240.00191 * 2 1 3 27 27 H 1.08995 * 109.46948 * 120.00096 * 2 1 3 28 28 H 1.09003 * 109.47011 * 286.91604 * 4 3 2 29 29 H 1.08998 * 109.47484 * 46.91195 * 4 3 2 30 30 H 1.08996 * 109.46891 * 166.92174 * 4 3 2 31 31 H 1.09000 * 113.47539 * 105.56338 * 5 3 2 32 32 H 1.09005 * 113.52533 * 335.10712 * 5 3 2 33 33 H 1.08001 * 119.71947 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.88718 * 179.69991 * 9 8 7 35 35 H 0.97004 * 119.99813 * 186.01057 * 11 10 9 36 36 H 0.96992 * 119.99932 * 6.01841 * 11 10 9 37 37 H 0.96998 * 120.00111 * 174.98074 * 16 15 13 38 38 H 1.07994 * 120.11337 * 359.97438 * 21 7 6 39 39 H 1.09006 * 113.47608 * 87.75660 * 22 6 5 40 40 H 1.09005 * 113.47705 * 218.22366 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3380 2.3348 -1.0257 5 6 3.5699 1.5684 -0.0006 6 7 3.4252 2.6836 0.9535 7 6 4.3968 2.6140 1.9570 8 6 4.0697 2.9708 3.2665 9 6 5.0188 2.9130 4.2673 10 6 6.3084 2.4873 3.9832 11 7 7.2606 2.4243 4.9920 12 6 6.6504 2.1237 2.6585 13 6 7.9592 1.6958 2.3543 14 1 8.5722 1.2460 3.1213 15 6 8.4634 1.8538 1.0590 16 7 7.8547 2.6441 0.2116 17 14 10.0056 0.9369 0.5389 18 1 9.7762 -0.5254 0.6587 19 1 10.3294 1.2728 -0.8709 20 1 11.1368 1.3339 1.4152 21 6 5.6743 2.1933 1.6479 22 6 2.1616 2.0662 1.3974 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6804 2.0755 -2.0275 29 1 0.2603 2.1853 -0.9601 30 1 1.5732 3.3790 -0.8202 31 1 3.9803 1.8714 -0.9639 32 1 4.0780 0.7004 0.4197 33 1 3.0671 3.2994 3.4974 34 1 4.7554 3.1961 5.2758 35 1 8.1820 2.2109 4.7766 36 1 7.0043 2.5936 5.9120 37 1 8.2433 2.8107 -0.6614 38 1 5.9236 1.9180 0.6339 39 1 2.2930 1.3308 2.1912 40 1 1.3784 2.7913 1.6190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382003994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:11 Heat of formation + Delta-G solvation = 30.468058 kcal Electronic energy + Delta-G solvation = -19736.408444 eV Core-core repulsion = 16936.512151 eV Total energy + Delta-G solvation = -2799.896293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93481 -39.22628 -35.85483 -35.40134 -33.69568 -31.44666 -30.49808 -28.61035 -27.71104 -26.37808 -25.99616 -23.59889 -22.77227 -21.06367 -19.34133 -18.91919 -17.75854 -17.28407 -16.92473 -16.43163 -16.28583 -15.67536 -15.22420 -14.78225 -14.51091 -14.13553 -14.04662 -13.82132 -13.68368 -13.25537 -13.15212 -12.91247 -12.75724 -12.66961 -12.48134 -12.32912 -12.12079 -12.02217 -11.57137 -11.34346 -11.31467 -11.02015 -11.00193 -10.87893 -9.81833 -9.24859 -8.51640 -7.78712 -6.07733 1.03976 1.28063 1.38367 1.48719 1.53433 2.23310 2.80522 3.28601 3.33751 3.64840 3.79371 3.91764 4.21038 4.27008 4.41570 4.47342 4.60454 4.63163 4.68548 4.74340 4.75843 4.83035 4.94705 5.05958 5.11876 5.14377 5.17066 5.22107 5.28675 5.35832 5.44000 5.48037 5.65054 5.69741 5.85606 5.98322 6.16940 6.38281 6.45284 6.83487 6.93656 7.02114 7.32208 7.55488 8.47210 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.006425 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.874029 B = 4356.597906 C = 5307.995895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.074 4.074 4 C -0.118 4.118 5 C 0.016 3.984 6 N -0.441 5.441 7 C 0.026 3.974 8 C -0.206 4.206 9 C -0.175 4.175 10 C 0.097 3.903 11 N -0.874 5.874 12 C 0.038 3.962 13 C -0.491 4.491 14 H 0.077 0.923 15 C 0.031 3.969 16 N -0.837 5.837 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.178 4.178 22 C 0.020 3.980 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.280 0.720 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -4.411 -0.691 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.074 4.074 4 C -0.175 4.175 5 C -0.112 4.112 6 N -0.156 5.156 7 C -0.071 4.071 8 C -0.228 4.228 9 C -0.200 4.200 10 C -0.005 4.005 11 N -0.417 5.417 12 C 0.032 3.968 13 C -0.522 4.522 14 H 0.095 0.905 15 C -0.182 4.182 16 N -0.464 5.464 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.200 4.200 22 C -0.107 4.107 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.221 0.779 36 H 0.221 0.779 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.720 -3.645 -1.235 10.454 hybrid contribution 1.510 -0.700 0.390 1.710 sum -8.210 -4.346 -0.845 9.327 Atomic orbital electron populations 1.21777 0.93793 1.02188 1.02478 1.21421 0.97572 0.93462 1.01874 1.22063 0.93056 0.96902 0.95428 1.21534 1.00750 0.98172 0.97050 1.23827 0.97479 0.92731 0.97213 1.66255 1.03197 1.35999 1.10197 1.19276 0.93151 1.03064 0.91602 1.20141 0.98966 1.12166 0.91537 1.20166 0.92567 1.08486 0.98738 1.18133 0.90369 1.02029 0.90013 1.41757 1.09730 1.83551 1.06650 1.17510 0.94091 0.94818 0.90359 1.19380 0.99096 1.37742 0.96016 0.90503 1.26627 1.01615 0.94170 0.95749 1.69931 1.39185 1.29388 1.07941 0.85324 0.77754 0.79232 0.77761 1.18869 1.19998 1.18296 1.20912 0.91400 1.08120 0.99610 1.23898 0.92714 0.97394 0.96718 0.91232 0.91900 0.92687 0.91236 0.92911 0.91917 0.89709 0.93240 0.91581 0.92978 0.87471 0.86573 0.77924 0.77886 0.90959 0.87648 0.92117 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.27 71.98 0.67 -1.93 16 2 C -0.11 -2.48 5.59 30.60 0.17 -2.31 16 3 C -0.07 -2.11 1.18 -51.84 -0.06 -2.17 16 4 C -0.12 -2.86 8.89 71.98 0.64 -2.22 16 5 C 0.02 0.60 5.62 83.57 0.47 1.07 16 6 N -0.44 -18.58 6.33 -725.12 -4.59 -23.16 16 7 C 0.03 1.28 5.33 38.14 0.20 1.48 16 8 C -0.21 -9.46 9.00 22.56 0.20 -9.26 16 9 C -0.18 -7.91 9.87 22.35 0.22 -7.69 16 10 C 0.10 4.71 6.79 38.97 0.26 4.98 16 11 N -0.87 -34.77 8.97 -50.31 -0.45 -35.22 16 12 C 0.04 2.05 5.58 -21.18 -0.12 1.94 16 13 C -0.49 -26.38 8.45 23.35 0.20 -26.18 16 14 H 0.08 3.87 6.77 -2.91 -0.02 3.85 16 15 C 0.03 1.60 5.19 85.23 0.44 2.04 16 16 N -0.84 -45.90 10.86 21.82 0.24 -45.67 16 17 Si 0.98 39.42 29.59 68.60 2.03 41.45 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.18 -9.72 7.38 22.81 0.17 -9.55 16 22 C 0.02 0.67 5.77 83.57 0.48 1.15 16 23 H 0.07 1.09 6.36 -2.38 -0.02 1.07 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.35 7.90 -2.39 -0.02 1.33 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.60 5.97 -2.39 -0.01 1.59 16 30 H 0.05 1.36 7.92 -2.39 -0.02 1.35 16 31 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 32 H 0.05 2.19 7.26 -2.38 -0.02 2.17 16 33 H 0.11 4.40 7.54 -2.91 -0.02 4.37 16 34 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.39 15.44 7.11 -92.71 -0.66 14.78 16 36 H 0.39 12.74 8.84 -92.71 -0.82 11.92 16 37 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 38 H 0.11 6.11 5.22 -2.91 -0.02 6.10 16 39 H 0.06 2.12 7.43 -2.38 -0.02 2.10 16 40 H 0.09 2.64 8.12 -2.38 -0.02 2.62 16 Total: -1.00 -62.45 314.43 0.75 -61.70 By element: Atomic # 1 Polarization: 49.97 SS G_CDS: -0.43 Total: 49.54 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 3.95 Total: -48.65 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.80 Total: -104.05 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -62.45 0.75 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382003994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.167 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds