Wall clock time and date at job start Mon Mar 30 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 C 1.50706 * 109.82445 * 59.29704 * 3 2 1 5 5 C 1.38234 * 120.00196 * 270.89020 * 4 3 2 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.54378 * 109.83080 * 180.18565 * 3 2 1 11 11 C 1.55305 * 102.25547 * 98.24852 * 10 3 2 12 12 C 1.54947 * 100.94050 * 34.13173 * 11 10 3 13 13 C 1.53005 * 110.30925 * 82.47208 * 12 11 10 14 14 C 1.50699 * 110.30944 * 204.54108 * 12 11 10 15 15 H 1.07990 * 120.00058 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99714 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00440 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99676 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47177 * 60.00678 * 18 16 14 20 20 H 1.48502 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47170 * 300.00304 * 18 16 14 22 22 O 1.43233 * 109.90774 * 298.36684 * 3 2 1 23 23 H 1.09004 * 109.46871 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47357 * 299.99620 * 1 2 3 25 25 H 1.08995 * 109.47083 * 60.00133 * 1 2 3 26 26 H 1.09001 * 109.47357 * 240.00380 * 2 1 3 27 27 H 1.09003 * 109.47387 * 119.99849 * 2 1 3 28 28 H 1.08000 * 119.99516 * 0.24808 * 5 4 3 29 29 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 33 33 H 1.09005 * 110.84500 * 216.43862 * 10 3 2 34 34 H 1.08996 * 110.85152 * 339.84979 * 10 3 2 35 35 H 1.09000 * 111.12933 * 152.04931 * 11 10 3 36 36 H 1.08997 * 111.12488 * 276.21846 * 11 10 3 37 37 H 1.08998 * 109.46709 * 60.00050 * 13 12 11 38 38 H 1.08997 * 109.47124 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.46924 * 300.00110 * 13 12 11 40 40 H 0.96995 * 120.00295 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5278 2.1657 1.2190 5 6 0.3137 2.8249 1.1724 6 6 -0.1563 3.4878 2.2907 7 6 0.5876 3.4909 3.4558 8 6 1.8012 2.8307 3.5028 9 6 2.2707 2.1670 2.3848 10 6 3.5837 1.4523 -0.0047 11 6 3.9074 1.6737 -1.5074 12 6 2.7321 2.5911 -1.9293 13 6 3.0356 4.0454 -1.5631 14 6 2.4775 2.4677 -3.4095 15 1 3.0839 1.8044 -4.0082 16 6 1.4696 3.2009 -3.9991 17 7 0.7307 4.0083 -3.2699 18 14 1.1535 3.0473 -5.8338 19 1 0.8116 1.6397 -6.1610 20 1 0.0251 3.9332 -6.2175 21 1 2.3727 3.4473 -6.5813 22 8 1.5992 2.1156 -1.1850 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 -0.2697 2.8184 0.2635 29 1 -1.1047 4.0032 2.2541 30 1 0.2206 4.0091 4.3294 31 1 2.3826 2.8335 4.4130 32 1 3.2191 1.6516 2.4214 33 1 3.9682 2.2736 0.6001 34 1 3.9787 0.4982 0.3439 35 1 4.8649 2.1793 -1.6327 36 1 3.8874 0.7323 -2.0564 37 1 3.9411 4.3680 -2.0770 38 1 2.2009 4.6779 -1.8651 39 1 3.1809 4.1260 -0.4858 40 1 0.0219 4.5244 -3.6847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383286220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:12 Heat of formation + Delta-G solvation = -28.687681 kcal Electronic energy + Delta-G solvation = -20703.000178 eV Core-core repulsion = 17868.245949 eV Total energy + Delta-G solvation = -2834.754230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75561 -37.71757 -34.03343 -32.07656 -31.36767 -30.33401 -30.04688 -28.51781 -25.43356 -24.78812 -22.39803 -22.10900 -21.56704 -19.45727 -18.86754 -16.60017 -16.38782 -15.06504 -14.79382 -14.58192 -14.24527 -14.08058 -13.63713 -13.10709 -12.94452 -12.78947 -12.16616 -12.11713 -11.93799 -11.81309 -11.24078 -11.12377 -10.99067 -10.87433 -10.75280 -10.59722 -10.51421 -10.30679 -10.19952 -10.00558 -9.78538 -9.38747 -8.99251 -8.46877 -8.43459 -8.17597 -7.92239 -5.94391 -4.10814 1.82064 1.89255 3.32395 3.37292 3.39777 4.26552 4.42903 4.85618 5.22313 5.32552 5.35666 5.45587 5.48639 5.54029 5.61265 5.81506 5.92908 6.00591 6.01200 6.11768 6.24394 6.33502 6.41654 6.45459 6.51739 6.55429 6.59190 6.73916 6.77237 6.83899 6.92845 6.94565 6.98029 7.05710 7.15365 7.24435 7.42651 7.49976 7.79310 8.18876 8.39913 8.68684 9.06756 9.59775 11.06846 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.007180 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.436585 B = 3898.579420 C = 4065.837420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.137 3.863 4 C -0.067 4.067 5 C -0.082 4.082 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.132 4.132 9 C -0.123 4.123 10 C -0.146 4.146 11 C -0.142 4.142 12 C 0.234 3.766 13 C -0.147 4.147 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.082 3.918 17 N -0.859 5.859 18 Si 0.888 3.112 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.333 6.333 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.092 0.908 39 H 0.011 0.989 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -3.608 10.272 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.096 3.904 4 C -0.067 4.067 5 C -0.100 4.100 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.184 4.184 11 C -0.180 4.180 12 C 0.197 3.803 13 C -0.205 4.205 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.124 4.124 17 N -0.495 5.495 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.253 6.253 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.030 0.970 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.906 -3.439 10.200 10.802 hybrid contribution 0.060 -0.012 -0.820 0.822 sum 0.966 -3.451 9.380 10.041 Atomic orbital electron populations 1.21728 0.95758 1.00178 1.02716 1.21701 0.96787 0.95447 1.00961 1.20678 0.92050 0.91207 0.86432 1.20339 0.94523 0.97010 0.94836 1.21183 0.95743 0.94970 0.98090 1.21147 0.99934 1.00182 0.93444 1.21001 0.95567 1.00707 0.97886 1.20967 0.96611 0.99340 0.98066 1.21009 0.99703 1.00417 0.92961 1.23200 0.95544 1.00945 0.98662 1.23306 1.00444 1.00909 0.93327 1.19859 0.80595 0.89088 0.90736 1.22111 1.01662 1.00625 0.96084 1.20956 1.17953 1.26111 0.90945 0.92209 1.24994 0.95374 0.94402 0.97587 1.69930 1.19283 1.25366 1.34970 0.86750 0.77779 0.78110 0.85826 1.20198 1.21258 1.20261 1.88827 1.32590 1.72862 1.31006 0.94112 0.93077 0.91246 0.91478 0.92790 0.84912 0.86699 0.87024 0.86932 0.86582 0.91383 0.91898 0.92080 0.91822 0.95010 0.88956 0.97043 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.14 37.16 0.34 -2.19 16 2 C -0.11 -1.96 5.06 -26.73 -0.14 -2.10 16 3 C 0.14 2.69 0.77 -91.05 -0.07 2.62 16 4 C -0.07 -1.23 4.26 -104.62 -0.45 -1.68 16 5 C -0.08 -1.54 7.51 -39.58 -0.30 -1.84 16 6 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 7 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 8 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 9 C -0.12 -1.98 8.75 -39.58 -0.35 -2.32 16 10 C -0.15 -2.65 4.66 -24.79 -0.12 -2.76 16 11 C -0.14 -2.95 6.01 -24.48 -0.15 -3.09 16 12 C 0.23 5.76 0.73 -90.74 -0.07 5.69 16 13 C -0.15 -3.62 8.62 37.16 0.32 -3.30 16 14 C -0.52 -14.16 8.30 -34.44 -0.29 -14.45 16 15 H 0.06 1.60 7.76 -52.49 -0.41 1.19 16 16 C 0.08 2.23 5.28 -17.82 -0.09 2.14 16 17 N -0.86 -24.13 10.97 55.43 0.61 -23.52 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 O -0.33 -8.09 8.22 -35.23 -0.29 -8.38 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 25 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.13 2.78 7.48 -52.49 -0.39 2.38 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.12 1.67 6.82 -52.48 -0.36 1.31 16 33 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 34 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 35 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 36 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.52 5.93 -51.93 -0.31 2.21 16 39 H 0.01 0.25 7.53 -51.93 -0.39 -0.14 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -28.44 314.17 -8.76 -37.19 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.25 Total: 4.39 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -2.54 Total: -30.40 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.61 Total: -23.52 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.29 Total: -8.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.44 -8.76 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383286220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.506 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds